Wall clock time and date at job start Mon Mar 30 2020 00:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 C 1.50710 * 109.47114 * 119.99226 * 2 1 3 5 5 H 1.07999 * 119.99591 * 119.99797 * 4 2 1 6 6 C 1.37870 * 120.00287 * 300.00165 * 4 2 1 7 7 N 1.31522 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00188 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46908 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46957 * 119.99878 * 8 6 4 11 11 H 1.48505 * 109.46798 * 239.99967 * 8 6 4 12 12 N 1.46901 * 109.47314 * 239.99198 * 2 1 3 13 13 C 1.46900 * 110.99788 * 86.45970 * 12 2 1 14 14 H 1.08998 * 109.54206 * 325.78553 * 13 12 2 15 15 C 1.53174 * 109.54234 * 205.60665 * 13 12 2 16 16 C 1.53100 * 109.15207 * 183.08966 * 15 13 12 17 17 O 1.42908 * 109.40193 * 57.68322 * 16 15 13 18 18 C 1.42813 * 114.14096 * 298.94907 * 17 16 15 19 19 C 1.53097 * 109.56325 * 300.76029 * 18 17 16 20 20 C 1.53103 * 109.16698 * 296.91997 * 19 18 17 21 21 O 1.42902 * 109.41682 * 302.48933 * 20 19 18 22 22 C 1.42913 * 114.10775 * 61.18316 * 21 20 19 23 23 C 1.53100 * 109.39739 * 298.80380 * 22 21 20 24 24 C 1.53022 * 109.64876 * 60.88422 * 18 17 16 25 25 H 1.08992 * 109.47219 * 65.81084 * 1 2 3 26 26 H 1.09002 * 109.47112 * 185.81315 * 1 2 3 27 27 H 1.09002 * 109.47095 * 305.81133 * 1 2 3 28 28 H 0.96992 * 119.99861 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99994 * 322.50486 * 12 2 1 30 30 H 1.08998 * 109.52714 * 302.98999 * 15 13 12 31 31 H 1.09002 * 109.52583 * 63.12380 * 15 13 12 32 32 H 1.09003 * 109.47685 * 177.66331 * 16 15 13 33 33 H 1.08994 * 109.48340 * 297.68756 * 16 15 13 34 34 H 1.09003 * 109.51946 * 56.82276 * 19 18 17 35 35 H 1.08996 * 109.52168 * 177.01309 * 19 18 17 36 36 H 1.09006 * 109.48148 * 182.50958 * 20 19 18 37 37 H 1.09000 * 109.48145 * 62.47669 * 20 19 18 38 38 H 1.08998 * 109.47902 * 178.82627 * 22 21 20 39 39 H 1.09001 * 109.48483 * 58.78468 * 22 21 20 40 40 H 1.09002 * 109.52399 * 297.63549 * 23 22 21 41 41 H 1.09003 * 109.57555 * 177.47528 * 23 22 21 42 42 H 1.09005 * 109.59536 * 182.79770 * 24 18 17 43 43 H 1.09005 * 109.45146 * 62.62758 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1454 -2.2874 3.6041 10 1 3.1466 -0.1869 4.8165 11 1 1.1660 -1.5862 4.8163 12 7 2.0197 -0.6927 -1.1993 13 6 2.1153 0.2304 -2.3381 14 1 1.3135 0.9663 -2.2793 15 6 1.9939 -0.5562 -3.6468 16 6 2.1718 0.4023 -4.8273 17 8 3.4391 1.0545 -4.7225 18 6 3.5953 1.8407 -3.5405 19 6 2.5124 2.9220 -3.4973 20 6 2.6949 3.8642 -4.6902 21 8 4.0069 4.4293 -4.6529 22 6 5.0597 3.4668 -4.7400 23 6 4.9728 2.5091 -3.5487 24 6 3.4699 0.9449 -2.3063 25 1 -0.3633 0.4211 -0.9374 26 1 -0.3633 -1.0224 0.1041 27 1 -0.3633 0.6013 0.8334 28 1 0.7087 1.1615 3.4843 29 1 1.4356 -1.4843 -1.4235 30 1 2.7655 -1.3253 -3.6826 31 1 1.0108 -1.0238 -3.7010 32 1 2.1278 -0.1588 -5.7609 33 1 1.3768 1.1477 -4.8134 34 1 1.5289 2.4549 -3.5493 35 1 2.5994 3.4878 -2.5697 36 1 1.9539 4.6621 -4.6400 37 1 2.5658 3.3059 -5.6175 38 1 6.0220 3.9785 -4.7257 39 1 4.9612 2.9031 -5.6677 40 1 5.1129 3.0662 -2.6223 41 1 5.7470 1.7467 -3.6358 42 1 3.5397 1.5531 -1.4045 43 1 4.2714 0.2061 -2.3111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:58 Heat of formation + Delta-G solvation = -121.253137 kcal Electronic energy + Delta-G solvation = -22337.130098 eV Core-core repulsion = 19187.857010 eV Total energy + Delta-G solvation = -3149.273089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70037 -39.04551 -37.63044 -35.02932 -34.22899 -32.83194 -32.08843 -29.86935 -28.90549 -27.25747 -24.92042 -24.75429 -24.21555 -22.16631 -21.43129 -20.26067 -18.40949 -17.66588 -17.10779 -16.93663 -16.77111 -16.53358 -15.96740 -15.83062 -15.57170 -15.31440 -14.76404 -14.35806 -14.10617 -13.70338 -13.57363 -13.45707 -13.28285 -13.04003 -12.91263 -12.87404 -12.59099 -12.38490 -12.29095 -12.17007 -12.06267 -12.03657 -11.47723 -11.30205 -11.16500 -10.93463 -10.64517 -10.51446 -10.22399 -8.98441 -8.11833 -6.22261 1.39644 1.41635 1.53810 2.42206 2.74149 2.96886 3.16989 3.40318 3.65965 3.74098 3.80657 3.98202 4.00780 4.16556 4.27526 4.30792 4.40668 4.43176 4.50948 4.61484 4.71022 4.74557 4.76913 4.78485 4.80481 4.86386 4.93181 4.95468 5.02295 5.05364 5.09184 5.21244 5.28333 5.32961 5.44666 5.67672 5.80984 6.25015 6.26020 6.28114 6.64547 6.83490 6.93940 7.47994 8.94262 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.004907 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.440548 B = 5704.917682 C = 6041.748466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.220 3.780 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.684 5.684 13 C 0.088 3.912 14 H 0.027 0.973 15 C -0.149 4.149 16 C 0.061 3.939 17 O -0.376 6.376 18 C 0.126 3.874 19 C -0.181 4.181 20 C 0.069 3.931 21 O -0.401 6.401 22 C 0.066 3.934 23 C -0.140 4.140 24 C -0.118 4.118 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 2.814 -16.917 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.111 3.889 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.315 5.315 13 C -0.022 4.022 14 H 0.045 0.955 15 C -0.187 4.187 16 C -0.015 4.015 17 O -0.295 6.295 18 C 0.086 3.914 19 C -0.219 4.219 20 C -0.007 4.007 21 O -0.320 6.320 22 C -0.010 4.010 23 C -0.178 4.178 24 C -0.157 4.157 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.066 3.161 -16.726 17.501 hybrid contribution -1.163 -0.544 1.509 1.981 sum 2.903 2.617 -15.217 15.711 Atomic orbital electron populations 1.22212 1.00012 0.99765 0.99158 1.18911 0.89840 0.92512 0.87638 0.98275 1.21481 1.30270 1.12317 0.91120 0.92917 1.25710 0.95490 0.95874 1.01874 1.70028 1.38158 1.24311 1.23883 0.85490 0.78087 0.78608 0.79330 1.19363 1.20821 1.20523 1.60674 1.56965 1.10148 1.03665 1.21505 0.95651 0.94185 0.90905 0.95537 1.22351 1.03212 0.99231 0.93900 1.22711 0.85725 0.94489 0.98623 1.87869 1.36154 1.64635 1.40836 1.21320 0.95828 0.89464 0.84780 1.22781 1.00230 0.98216 1.00678 1.22551 0.84621 0.97015 0.96519 1.87876 1.15130 1.34352 1.94657 1.22625 0.91109 0.90468 0.96798 1.22194 0.95427 0.99489 1.00697 1.22048 0.98164 0.98471 0.96990 0.95602 0.94928 0.92422 0.93064 0.84992 0.90836 0.89961 0.86238 0.92401 0.90184 0.91659 0.87799 0.91900 0.87136 0.91961 0.90464 0.89352 0.93841 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.30 8.85 71.98 0.64 -6.66 16 2 C 0.22 11.12 2.38 44.17 0.11 11.22 16 3 H 0.00 -0.04 7.22 -2.39 -0.02 -0.06 16 4 C -0.51 -28.78 8.84 25.60 0.23 -28.55 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -53.68 11.38 21.45 0.24 -53.44 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.68 -28.65 6.05 -472.69 -2.86 -31.51 16 13 C 0.09 3.02 2.05 45.03 0.09 3.11 16 14 H 0.03 0.98 5.80 -2.39 -0.01 0.96 16 15 C -0.15 -3.89 5.40 30.69 0.17 -3.72 16 16 C 0.06 1.33 6.52 72.02 0.47 1.80 16 17 O -0.38 -9.57 9.21 -148.98 -1.37 -10.95 16 18 C 0.13 3.46 0.68 -10.72 -0.01 3.45 16 19 C -0.18 -4.79 4.25 30.66 0.13 -4.66 16 20 C 0.07 1.56 6.70 72.02 0.48 2.05 16 21 O -0.40 -10.11 10.76 -148.98 -1.60 -11.71 16 22 C 0.07 1.43 6.70 72.02 0.48 1.91 16 23 C -0.14 -3.45 5.14 30.67 0.16 -3.30 16 24 C -0.12 -4.06 4.41 30.66 0.14 -3.93 16 25 H 0.03 1.07 7.50 -2.39 -0.02 1.06 16 26 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 3.10 6.25 -2.39 -0.01 3.08 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.33 12.98 8.08 -89.70 -0.72 12.26 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.18 6.30 -2.39 -0.02 1.16 16 34 H 0.08 2.08 5.03 -2.39 -0.01 2.07 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.06 1.29 7.83 -2.39 -0.02 1.28 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.74 7.57 -2.38 -0.02 1.72 16 43 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -62.53 322.42 0.22 -62.31 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.26 Total: 25.19 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.53 Total: -26.35 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.62 Total: -84.95 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -2.98 Total: -22.66 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.53 0.22 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.946 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds