Wall clock time and date at job start Mon Mar 30 2020 00:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46897 * 111.00355 * 84.99974 * 12 2 1 14 14 H 1.09002 * 109.53800 * 325.18086 * 13 12 2 15 15 C 1.53177 * 109.54091 * 85.44315 * 13 12 2 16 16 C 1.53092 * 109.15606 * 176.91461 * 15 13 12 17 17 O 1.42916 * 109.40231 * 302.32341 * 16 15 13 18 18 C 1.42811 * 114.14692 * 61.03445 * 17 16 15 19 19 C 1.53100 * 109.56229 * 59.27253 * 18 17 16 20 20 C 1.53100 * 109.16666 * 63.04160 * 19 18 17 21 21 O 1.42903 * 109.41839 * 57.50270 * 20 19 18 22 22 C 1.42907 * 114.12025 * 298.83375 * 21 20 19 23 23 C 1.53106 * 109.39393 * 61.18652 * 22 21 20 24 24 C 1.53008 * 109.58618 * 299.08750 * 18 17 16 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99869 * 321.04664 * 12 2 1 30 30 H 1.09010 * 109.52356 * 296.81177 * 15 13 12 31 31 H 1.08994 * 109.52379 * 57.00974 * 15 13 12 32 32 H 1.09001 * 109.48679 * 182.34071 * 16 15 13 33 33 H 1.09004 * 109.48485 * 62.29678 * 16 15 13 34 34 H 1.08997 * 109.52421 * 182.94725 * 19 18 17 35 35 H 1.08999 * 109.52318 * 303.13693 * 19 18 17 36 36 H 1.09007 * 109.48333 * 297.51936 * 20 19 18 37 37 H 1.09002 * 109.49398 * 177.49506 * 20 19 18 38 38 H 1.08999 * 109.48747 * 301.21428 * 22 21 20 39 39 H 1.09003 * 109.49739 * 181.16993 * 22 21 20 40 40 H 1.09001 * 109.52637 * 182.54465 * 23 22 21 41 41 H 1.09005 * 109.57421 * 62.38262 * 23 22 21 42 42 H 1.08997 * 109.51238 * 297.44710 * 24 18 17 43 43 H 1.08994 * 109.56333 * 177.30983 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 2.0826 0.2225 -2.3469 14 1 1.2600 0.9354 -2.2901 15 6 3.4169 0.9745 -2.3300 16 6 3.5059 1.8678 -3.5702 17 8 3.3707 1.0645 -4.7445 18 6 2.1256 0.3712 -4.8379 19 6 0.9749 1.3810 -4.8328 20 6 1.0853 2.2752 -6.0706 21 8 1.0698 1.4631 -7.2463 22 6 2.1518 0.5331 -7.3280 23 6 2.0837 -0.4316 -6.1411 24 6 1.9772 -0.5791 -3.6479 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7086 1.1614 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 3.4767 1.5904 -1.4326 31 1 4.2387 0.2586 -2.3371 32 1 4.4710 2.3741 -3.5852 33 1 2.7068 2.6087 -3.5427 34 1 0.0236 0.8493 -4.8513 35 1 1.0328 1.9947 -3.9338 36 1 2.0177 2.8385 -6.0301 37 1 0.2435 2.9672 -6.0957 38 1 3.0982 1.0733 -7.3035 39 1 2.0784 -0.0296 -8.2586 40 1 2.9335 -1.1133 -6.1765 41 1 1.1564 -1.0027 -6.1874 42 1 2.7684 -1.3281 -3.6792 43 1 1.0065 -1.0727 -3.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:01 Heat of formation + Delta-G solvation = -101.759723 kcal Electronic energy + Delta-G solvation = -22219.573709 eV Core-core repulsion = 19071.145918 eV Total energy + Delta-G solvation = -3148.427791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63380 -37.94647 -36.05744 -33.39438 -33.02293 -31.33815 -30.87669 -28.81867 -27.16654 -25.16169 -23.90946 -23.52561 -23.17285 -20.68803 -19.85982 -19.06660 -16.70064 -16.38119 -16.09429 -15.84667 -15.39878 -14.88354 -14.77527 -14.58385 -14.54587 -13.73300 -13.27685 -12.93230 -12.75248 -12.45048 -12.39478 -12.09742 -11.86713 -11.65362 -11.44618 -11.31005 -11.07135 -10.98336 -10.75170 -10.59062 -10.43779 -10.26817 -10.20177 -10.10917 -9.81090 -9.55730 -9.16535 -8.94970 -8.38112 -7.26761 -6.00370 -4.03412 3.30156 3.38042 3.43476 3.75795 3.83744 4.41324 4.56277 4.72260 4.77265 4.91778 5.03749 5.16595 5.26537 5.31269 5.33884 5.37762 5.44419 5.53336 5.57743 5.59358 5.65029 5.76823 5.87654 5.94121 6.00947 6.05223 6.06914 6.21776 6.33893 6.51801 6.65435 6.73641 6.80053 7.08173 7.11823 7.35104 7.35696 7.71461 7.88040 8.26148 8.51928 8.60559 9.04474 9.62241 11.06731 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039804 B = 0.004243 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.273293 B = 6597.421693 C = 6691.851313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.679 5.679 13 C 0.089 3.911 14 H 0.037 0.963 15 C -0.140 4.140 16 C 0.059 3.941 17 O -0.374 6.374 18 C 0.123 3.877 19 C -0.184 4.184 20 C 0.066 3.934 21 O -0.387 6.387 22 C 0.064 3.936 23 C -0.139 4.139 24 C -0.140 4.140 25 H 0.089 0.911 26 H 0.003 0.997 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.325 0.675 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 1.478 -16.894 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.309 5.309 13 C -0.022 4.022 14 H 0.055 0.945 15 C -0.178 4.178 16 C -0.018 4.018 17 O -0.294 6.294 18 C 0.083 3.917 19 C -0.222 4.222 20 C -0.010 4.010 21 O -0.305 6.305 22 C -0.013 4.013 23 C -0.177 4.177 24 C -0.178 4.178 25 H 0.107 0.893 26 H 0.022 0.978 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.910 1.667 -16.852 17.041 hybrid contribution -0.755 -0.314 1.358 1.585 sum 1.154 1.353 -15.494 15.596 Atomic orbital electron populations 1.22438 1.00846 0.99146 1.00373 1.19197 0.89426 0.94384 0.86586 0.94914 1.21200 1.30045 1.12385 0.89601 0.91933 1.24952 0.95349 0.95206 0.99050 1.69891 1.37452 1.23252 1.23218 0.86467 0.78519 0.79682 0.82887 1.19740 1.21142 1.21221 1.60832 1.58067 1.08796 1.03202 1.21428 0.95961 0.94594 0.90190 0.94536 1.22180 0.98893 0.99304 0.97470 1.22658 1.01375 0.92835 0.84937 1.87864 1.35926 1.63114 1.42457 1.21317 0.84061 0.91433 0.94881 1.22823 0.99842 0.99768 0.99721 1.22492 1.01869 0.92462 0.84212 1.87883 1.49042 1.51811 1.41805 1.22522 0.90305 0.90691 0.97763 1.22180 1.03510 0.98382 0.93610 1.22337 1.02525 0.98649 0.94326 0.89275 0.97802 0.95380 0.93151 0.85749 0.90678 0.90724 0.89076 0.93407 0.90215 0.89879 0.92746 0.89150 0.92379 0.89162 0.90030 0.89914 0.90403 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.92 37.16 0.33 -3.69 16 2 C 0.21 5.23 2.39 -68.86 -0.16 5.06 16 3 H 0.03 0.89 7.18 -51.93 -0.37 0.52 16 4 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.68 -14.10 6.04 -100.76 -0.61 -14.71 16 13 C 0.09 1.53 2.08 -67.53 -0.14 1.39 16 14 H 0.04 0.67 5.70 -51.93 -0.30 0.38 16 15 C -0.14 -2.31 5.62 -26.59 -0.15 -2.46 16 16 C 0.06 0.80 6.52 37.21 0.24 1.04 16 17 O -0.37 -5.18 9.20 -35.23 -0.32 -5.50 16 18 C 0.12 1.58 0.68 -90.50 -0.06 1.52 16 19 C -0.18 -2.27 4.25 -26.63 -0.11 -2.38 16 20 C 0.07 0.76 6.70 37.21 0.25 1.01 16 21 O -0.39 -4.81 10.76 -35.23 -0.38 -5.19 16 22 C 0.06 0.68 6.70 37.21 0.25 0.93 16 23 C -0.14 -1.53 5.14 -26.61 -0.14 -1.67 16 24 C -0.14 -2.02 4.18 -26.64 -0.11 -2.13 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 27 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.33 6.48 8.10 -39.29 -0.32 6.16 16 30 H 0.07 1.37 7.51 -51.92 -0.39 0.98 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.62 6.30 -51.93 -0.33 0.29 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.08 5.03 -51.93 -0.26 0.82 16 36 H 0.05 0.62 7.83 -51.92 -0.41 0.22 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -28.86 322.02 -8.31 -37.17 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.25 Total: 5.71 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.20 Total: -13.83 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.02 Total: -39.63 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.70 Total: -10.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.86 -8.31 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.593 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds