Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46897 * 111.00355 * 84.99974 * 12 2 1 14 14 H 1.09002 * 109.53800 * 325.18086 * 13 12 2 15 15 C 1.53177 * 109.54091 * 85.44315 * 13 12 2 16 16 C 1.53092 * 109.15606 * 176.91461 * 15 13 12 17 17 O 1.42916 * 109.40231 * 302.32341 * 16 15 13 18 18 C 1.42811 * 114.14692 * 61.03445 * 17 16 15 19 19 C 1.53100 * 109.56229 * 59.27253 * 18 17 16 20 20 C 1.53100 * 109.16666 * 63.04160 * 19 18 17 21 21 O 1.42903 * 109.41839 * 57.50270 * 20 19 18 22 22 C 1.42907 * 114.12025 * 298.83375 * 21 20 19 23 23 C 1.53106 * 109.39393 * 61.18652 * 22 21 20 24 24 C 1.53008 * 109.58618 * 299.08750 * 18 17 16 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99869 * 321.04664 * 12 2 1 30 30 H 1.09010 * 109.52356 * 296.81177 * 15 13 12 31 31 H 1.08994 * 109.52379 * 57.00974 * 15 13 12 32 32 H 1.09001 * 109.48679 * 182.34071 * 16 15 13 33 33 H 1.09004 * 109.48485 * 62.29678 * 16 15 13 34 34 H 1.08997 * 109.52421 * 182.94725 * 19 18 17 35 35 H 1.08999 * 109.52318 * 303.13693 * 19 18 17 36 36 H 1.09007 * 109.48333 * 297.51936 * 20 19 18 37 37 H 1.09002 * 109.49398 * 177.49506 * 20 19 18 38 38 H 1.08999 * 109.48747 * 301.21428 * 22 21 20 39 39 H 1.09003 * 109.49739 * 181.16993 * 22 21 20 40 40 H 1.09001 * 109.52637 * 182.54465 * 23 22 21 41 41 H 1.09005 * 109.57421 * 62.38262 * 23 22 21 42 42 H 1.08997 * 109.51238 * 297.44710 * 24 18 17 43 43 H 1.08994 * 109.56333 * 177.30983 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0198 -0.6925 -1.1994 13 6 2.0826 0.2225 -2.3469 14 1 1.2600 0.9354 -2.2901 15 6 3.4169 0.9745 -2.3300 16 6 3.5059 1.8678 -3.5702 17 8 3.3707 1.0645 -4.7445 18 6 2.1256 0.3712 -4.8379 19 6 0.9749 1.3810 -4.8328 20 6 1.0853 2.2752 -6.0706 21 8 1.0698 1.4631 -7.2463 22 6 2.1518 0.5331 -7.3280 23 6 2.0837 -0.4316 -6.1411 24 6 1.9772 -0.5791 -3.6479 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7086 1.1614 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 3.4767 1.5904 -1.4326 31 1 4.2387 0.2586 -2.3371 32 1 4.4710 2.3741 -3.5852 33 1 2.7068 2.6087 -3.5427 34 1 0.0236 0.8493 -4.8513 35 1 1.0328 1.9947 -3.9338 36 1 2.0177 2.8385 -6.0301 37 1 0.2435 2.9672 -6.0957 38 1 3.0982 1.0733 -7.3035 39 1 2.0784 -0.0296 -8.2586 40 1 2.9335 -1.1133 -6.1765 41 1 1.1564 -1.0027 -6.1874 42 1 2.7684 -1.3281 -3.6792 43 1 1.0065 -1.0727 -3.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = -120.998647 kcal Electronic energy + Delta-G solvation = -22220.407971 eV Core-core repulsion = 19071.145918 eV Total energy + Delta-G solvation = -3149.262053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70267 -39.04188 -37.63092 -35.04698 -34.21332 -32.79390 -32.05889 -30.08521 -28.71380 -27.25183 -24.87571 -24.75443 -24.27644 -22.25403 -21.33869 -20.23474 -18.41239 -17.64831 -17.08955 -16.90537 -16.85276 -16.39274 -16.15332 -15.82944 -15.56761 -15.23812 -14.77810 -14.43888 -14.05595 -13.67520 -13.53291 -13.42807 -13.32416 -13.03839 -12.93463 -12.85737 -12.56227 -12.38048 -12.26754 -12.21367 -12.06066 -11.92446 -11.53990 -11.37833 -11.11556 -10.93752 -10.62545 -10.50207 -10.22048 -8.98928 -8.11262 -6.22101 1.40271 1.42403 1.54470 2.42674 2.73554 2.97365 3.17250 3.40520 3.62009 3.75295 3.81405 4.01641 4.03607 4.15104 4.27739 4.31413 4.38270 4.41701 4.52314 4.64067 4.68537 4.71588 4.77832 4.79157 4.83820 4.85347 4.92006 4.99034 5.03082 5.07265 5.08720 5.20112 5.28730 5.34064 5.45190 5.67860 5.82435 6.25170 6.26866 6.27587 6.64325 6.82775 6.93846 7.48220 8.94404 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039804 B = 0.004243 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.273293 B = 6597.421693 C = 6691.851313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.219 3.781 3 H 0.002 0.998 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.684 5.684 13 C 0.089 3.911 14 H 0.027 0.973 15 C -0.137 4.137 16 C 0.066 3.934 17 O -0.377 6.377 18 C 0.121 3.879 19 C -0.182 4.182 20 C 0.068 3.932 21 O -0.399 6.399 22 C 0.062 3.938 23 C -0.136 4.136 24 C -0.131 4.131 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 0.949 -18.183 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.111 3.889 3 H 0.020 0.980 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.314 5.314 13 C -0.021 4.021 14 H 0.045 0.955 15 C -0.175 4.175 16 C -0.011 4.011 17 O -0.296 6.296 18 C 0.081 3.919 19 C -0.220 4.220 20 C -0.009 4.009 21 O -0.318 6.318 22 C -0.014 4.014 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.019 1.132 -18.161 18.308 hybrid contribution -0.780 -0.143 1.736 1.909 sum 1.239 0.989 -16.425 16.501 Atomic orbital electron populations 1.22241 1.00175 0.99171 0.99917 1.18914 0.89767 0.92670 0.87564 0.98022 1.21482 1.30262 1.12371 0.91131 0.92905 1.25697 0.95473 0.95863 1.01832 1.70011 1.38126 1.24267 1.23893 0.85492 0.78080 0.78611 0.79335 1.19401 1.20768 1.20576 1.60713 1.57813 1.09391 1.03434 1.21487 0.95970 0.94274 0.90382 0.95486 1.22128 0.98085 0.99171 0.98150 1.22622 1.02794 0.92230 0.83433 1.87874 1.36515 1.63154 1.42045 1.21422 0.83941 0.91368 0.95124 1.22793 0.99623 0.99693 0.99848 1.22526 1.02503 0.92335 0.83521 1.87875 1.49721 1.52193 1.42002 1.22649 0.89721 0.90451 0.98569 1.22197 1.04346 0.98356 0.92488 1.22265 1.02918 0.98515 0.93244 0.92029 0.95840 0.94962 0.93034 0.85155 0.93135 0.91733 0.87185 0.92679 0.90083 0.90881 0.92785 0.87806 0.92743 0.86935 0.89253 0.89042 0.90710 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 8.92 71.98 0.64 -6.82 16 2 C 0.22 11.05 2.39 44.17 0.11 11.16 16 3 H 0.00 0.10 7.18 -2.39 -0.02 0.09 16 4 C -0.51 -28.64 8.84 25.60 0.23 -28.41 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 8 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.68 -28.57 6.04 -472.70 -2.86 -31.43 16 13 C 0.09 3.06 2.08 45.03 0.09 3.15 16 14 H 0.03 1.00 5.70 -2.39 -0.01 0.98 16 15 C -0.14 -4.55 5.62 30.68 0.17 -4.38 16 16 C 0.07 1.72 6.52 72.01 0.47 2.19 16 17 O -0.38 -9.75 9.20 -148.98 -1.37 -11.12 16 18 C 0.12 2.89 0.68 -10.72 -0.01 2.89 16 19 C -0.18 -4.18 4.25 30.66 0.13 -4.05 16 20 C 0.07 1.41 6.70 72.02 0.48 1.90 16 21 O -0.40 -8.96 10.76 -148.98 -1.60 -10.56 16 22 C 0.06 1.17 6.70 72.02 0.48 1.65 16 23 C -0.14 -2.65 5.14 30.67 0.16 -2.49 16 24 C -0.13 -3.60 4.18 30.66 0.13 -3.47 16 25 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 26 H 0.02 0.99 7.43 -2.39 -0.02 0.97 16 27 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 29 H 0.33 13.05 8.10 -89.69 -0.73 12.33 16 30 H 0.05 1.91 7.51 -2.38 -0.02 1.89 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 1.37 6.30 -2.38 -0.02 1.36 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.82 5.03 -2.39 -0.01 1.81 16 36 H 0.05 1.13 7.83 -2.38 -0.02 1.11 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.29 322.02 0.23 -61.06 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.26 Total: 24.57 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 3.53 Total: -25.73 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.61 Total: -84.35 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -2.97 Total: -21.69 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.29 0.23 -61.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.939 kcal (2) G-P(sol) polarization free energy of solvation -61.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds