Wall clock time and date at job start Mon Mar 30 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08994 * 109.47018 * 2 1 4 4 C 1.50706 * 109.46816 * 240.00374 * 2 1 3 5 5 H 1.07994 * 119.99550 * 245.46264 * 4 2 1 6 6 C 1.37874 * 119.99944 * 65.46269 * 4 2 1 7 7 N 1.31510 * 120.00421 * 9.53957 * 6 4 2 8 8 Si 1.86803 * 119.99826 * 189.54525 * 6 4 2 9 9 H 1.48502 * 109.47172 * 84.99240 * 8 6 4 10 10 H 1.48499 * 109.47114 * 204.99320 * 8 6 4 11 11 H 1.48496 * 109.47061 * 324.99193 * 8 6 4 12 12 N 1.46895 * 109.47021 * 120.00586 * 2 1 3 13 13 C 1.46898 * 110.99627 * 274.99719 * 12 2 1 14 14 H 1.08998 * 109.62075 * 34.77601 * 13 12 2 15 15 C 1.53319 * 109.63108 * 274.51769 * 13 12 2 16 16 C 1.53093 * 109.22648 * 183.17230 * 15 13 12 17 17 O 1.42923 * 109.39654 * 57.63605 * 16 15 13 18 18 C 1.42824 * 114.09006 * 298.92821 * 17 16 15 19 19 C 1.53096 * 109.55303 * 181.24289 * 18 17 16 20 20 C 1.53109 * 109.15108 * 63.02581 * 19 18 17 21 21 O 1.42899 * 109.41399 * 57.50727 * 20 19 18 22 22 C 1.42906 * 114.13347 * 298.83824 * 21 20 19 23 23 C 1.53104 * 109.52393 * 300.94908 * 18 17 16 24 24 C 1.53008 * 109.56183 * 61.06122 * 18 17 16 25 25 H 1.08996 * 109.47183 * 183.74012 * 1 2 3 26 26 H 1.09001 * 109.46544 * 303.74105 * 1 2 3 27 27 H 1.08998 * 109.46667 * 63.73966 * 1 2 3 28 28 H 0.97002 * 120.00556 * 180.02562 * 7 6 4 29 29 H 1.00902 * 110.99820 * 151.04917 * 12 2 1 30 30 H 1.08999 * 109.50044 * 63.24301 * 15 13 12 31 31 H 1.09005 * 109.54625 * 303.12418 * 15 13 12 32 32 H 1.08995 * 109.48457 * 297.66149 * 16 15 13 33 33 H 1.08993 * 109.49639 * 177.62137 * 16 15 13 34 34 H 1.08997 * 109.52512 * 182.92731 * 19 18 17 35 35 H 1.09000 * 109.52318 * 303.12175 * 19 18 17 36 36 H 1.08999 * 109.48255 * 297.52418 * 20 19 18 37 37 H 1.09007 * 109.48085 * 177.48662 * 20 19 18 38 38 H 1.08995 * 109.48274 * 301.19723 * 22 21 20 39 39 H 1.08994 * 109.48505 * 181.14978 * 22 21 20 40 40 H 1.08999 * 109.53088 * 56.87846 * 23 18 17 41 41 H 1.09000 * 109.52610 * 177.00840 * 23 18 17 42 42 H 1.09005 * 109.52516 * 62.40139 * 24 18 17 43 43 H 1.09002 * 109.52768 * 182.53048 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.5785 -1.6370 -1.1339 6 6 1.7946 -0.1772 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1763 -1.1777 -4.0103 9 1 1.0244 -2.0609 -4.3244 10 1 2.4229 -0.2609 -5.1522 11 1 3.3849 -2.0067 -3.7711 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3468 14 1 1.2609 0.9365 2.2909 15 6 3.4179 0.9756 2.3325 16 6 3.5072 1.8671 3.5739 17 8 3.3708 1.0622 4.7471 18 6 2.1243 0.3711 4.8382 19 6 2.0767 -0.4302 6.1419 20 6 2.1435 0.5358 7.3279 21 8 1.0647 1.4689 7.2418 22 6 1.0857 2.2796 6.0652 23 6 0.9759 1.3836 4.8284 24 6 1.9772 -0.5792 3.6480 25 1 -0.3633 -1.0254 0.0670 26 1 -0.3632 0.5708 0.8546 27 1 -0.3632 0.4547 -0.9216 28 1 1.1314 1.4106 -3.4723 29 1 2.9174 -1.1205 1.0286 30 1 3.4782 1.5925 1.4360 31 1 4.2402 0.2601 2.3381 32 1 2.7090 2.6087 3.5471 33 1 4.4727 2.3725 3.5901 34 1 1.1476 -0.9982 6.1866 35 1 2.9249 -1.1137 6.1805 36 1 3.0916 1.0733 7.3060 37 1 2.0651 -0.0257 8.2589 38 1 2.0198 2.8399 6.0264 39 1 0.2458 2.9738 6.0869 40 1 1.0374 1.9957 3.9286 41 1 0.0232 0.8542 4.8444 42 1 2.7687 -1.3280 3.6797 43 1 1.0065 -1.0731 3.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:02 Heat of formation + Delta-G solvation = -104.998358 kcal Electronic energy + Delta-G solvation = -22217.083342 eV Core-core repulsion = 19068.515114 eV Total energy + Delta-G solvation = -3148.568229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61167 -37.94516 -35.99252 -33.34893 -33.05115 -31.30440 -30.82093 -28.74418 -27.42898 -25.20098 -23.88932 -23.46987 -23.06820 -20.70345 -19.69984 -19.17499 -16.71256 -16.50088 -16.06217 -15.83709 -15.39969 -15.01178 -14.71233 -14.54742 -14.06243 -13.78711 -13.47798 -13.00371 -12.67807 -12.57947 -12.35835 -12.15010 -11.83232 -11.62922 -11.39025 -11.13324 -11.01971 -10.95654 -10.73323 -10.62117 -10.45376 -10.39102 -10.23494 -10.18724 -9.79689 -9.56549 -9.13332 -8.89421 -8.47782 -7.28708 -6.09658 -4.11708 3.28100 3.34455 3.37027 3.77688 3.86033 4.37351 4.59391 4.76121 4.83305 4.95375 5.08066 5.19497 5.20917 5.25237 5.34827 5.42067 5.45870 5.53058 5.58610 5.60991 5.67355 5.80033 5.90587 5.94794 6.06169 6.07305 6.10465 6.17378 6.36460 6.50971 6.59903 6.78040 7.05274 7.13555 7.14619 7.35303 7.39339 7.75278 7.80988 8.12979 8.32955 8.64514 8.99418 9.53573 10.99492 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039981 B = 0.004235 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.170936 B = 6610.047458 C = 6666.327581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.210 3.790 3 H 0.009 0.991 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.090 3.910 14 H 0.072 0.928 15 C -0.183 4.183 16 C 0.063 3.937 17 O -0.375 6.375 18 C 0.119 3.881 19 C -0.138 4.138 20 C 0.064 3.936 21 O -0.387 6.387 22 C 0.066 3.934 23 C -0.183 4.183 24 C -0.125 4.125 25 H 0.034 0.966 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 1.508 16.326 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.027 0.973 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.022 4.022 14 H 0.090 0.910 15 C -0.222 4.222 16 C -0.014 4.014 17 O -0.295 6.295 18 C 0.079 3.921 19 C -0.176 4.176 20 C -0.013 4.013 21 O -0.305 6.305 22 C -0.011 4.011 23 C -0.221 4.221 24 C -0.164 4.164 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.243 1.386 16.603 16.707 hybrid contribution 0.951 0.064 -1.815 2.050 sum 2.194 1.450 14.788 15.020 Atomic orbital electron populations 1.21664 0.98418 0.98792 0.98856 1.19099 0.91947 0.92976 0.85680 0.97347 1.21215 1.35982 1.08183 0.90635 0.92252 1.24908 0.95190 0.94599 0.99031 1.69962 1.44904 1.13971 1.23851 0.86606 0.78771 0.80078 0.82508 1.20491 1.21376 1.19975 1.60776 1.32169 1.32367 1.05933 1.21579 0.95161 0.93629 0.91796 0.91032 1.22969 1.00223 1.00526 0.98530 1.22540 1.01342 0.92701 0.84814 1.87869 1.36114 1.63164 1.42338 1.21409 0.83808 0.91597 0.95244 1.22166 1.03537 0.98350 0.93554 1.22522 0.90321 0.90642 0.97803 1.87880 1.49150 1.51692 1.41814 1.22499 1.01786 0.92507 0.84278 1.22816 1.00040 0.99671 0.99545 1.22142 1.02928 0.98001 0.93304 0.94703 0.97434 0.91890 0.92897 0.84991 0.90585 0.91378 0.93210 0.89369 0.89784 0.90137 0.92488 0.89200 0.92853 0.89157 0.89978 0.89987 0.91391 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.26 37.16 0.34 -2.53 16 2 C 0.21 5.19 2.28 -68.86 -0.16 5.03 16 3 H 0.01 0.24 7.14 -51.93 -0.37 -0.13 16 4 C -0.52 -14.11 8.48 -34.44 -0.29 -14.40 16 5 H 0.06 1.60 7.69 -52.49 -0.40 1.19 16 6 C 0.07 1.78 5.17 -17.82 -0.09 1.69 16 7 N -0.89 -25.24 12.16 55.43 0.67 -24.56 16 8 Si 0.89 21.12 29.55 -169.99 -5.02 16.10 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.14 6.06 -100.67 -0.61 -14.75 16 13 C 0.09 1.54 2.06 -67.45 -0.14 1.40 16 14 H 0.07 1.32 5.72 -51.93 -0.30 1.02 16 15 C -0.18 -2.91 5.39 -26.52 -0.14 -3.05 16 16 C 0.06 0.85 6.52 37.21 0.24 1.09 16 17 O -0.38 -5.19 9.20 -35.23 -0.32 -5.51 16 18 C 0.12 1.55 0.69 -90.51 -0.06 1.49 16 19 C -0.14 -1.55 5.15 -26.63 -0.14 -1.69 16 20 C 0.06 0.69 6.70 37.21 0.25 0.94 16 21 O -0.39 -4.87 10.76 -35.23 -0.38 -5.25 16 22 C 0.07 0.76 6.70 37.22 0.25 1.01 16 23 C -0.18 -2.28 4.24 -26.62 -0.11 -2.40 16 24 C -0.13 -1.85 4.53 -26.63 -0.12 -1.97 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 27 H 0.06 1.65 6.83 -51.93 -0.35 1.30 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.87 7.97 -39.29 -0.31 6.56 16 30 H 0.08 1.34 7.52 -51.93 -0.39 0.95 16 31 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.05 0.64 6.29 -51.93 -0.33 0.32 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 37 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.05 0.62 7.82 -51.93 -0.41 0.21 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.07 5.01 -51.93 -0.26 0.81 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -28.49 323.18 -8.24 -36.73 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.28 Total: 5.76 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.17 Total: -13.39 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.06 Total: -39.31 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.70 Total: -10.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.49 -8.24 -36.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.266 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds