Wall clock time and date at job start Mon Mar 30 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08994 * 109.47018 * 2 1 4 4 C 1.50706 * 109.46816 * 240.00374 * 2 1 3 5 5 H 1.07994 * 119.99550 * 245.46264 * 4 2 1 6 6 C 1.37874 * 119.99944 * 65.46269 * 4 2 1 7 7 N 1.31510 * 120.00421 * 9.53957 * 6 4 2 8 8 Si 1.86803 * 119.99826 * 189.54525 * 6 4 2 9 9 H 1.48502 * 109.47172 * 84.99240 * 8 6 4 10 10 H 1.48499 * 109.47114 * 204.99320 * 8 6 4 11 11 H 1.48496 * 109.47061 * 324.99193 * 8 6 4 12 12 N 1.46895 * 109.47021 * 120.00586 * 2 1 3 13 13 C 1.46898 * 110.99627 * 274.99719 * 12 2 1 14 14 H 1.08998 * 109.62075 * 34.77601 * 13 12 2 15 15 C 1.53319 * 109.63108 * 274.51769 * 13 12 2 16 16 C 1.53093 * 109.22648 * 183.17230 * 15 13 12 17 17 O 1.42923 * 109.39654 * 57.63605 * 16 15 13 18 18 C 1.42824 * 114.09006 * 298.92821 * 17 16 15 19 19 C 1.53096 * 109.55303 * 181.24289 * 18 17 16 20 20 C 1.53109 * 109.15108 * 63.02581 * 19 18 17 21 21 O 1.42899 * 109.41399 * 57.50727 * 20 19 18 22 22 C 1.42906 * 114.13347 * 298.83824 * 21 20 19 23 23 C 1.53104 * 109.52393 * 300.94908 * 18 17 16 24 24 C 1.53008 * 109.56183 * 61.06122 * 18 17 16 25 25 H 1.08996 * 109.47183 * 183.74012 * 1 2 3 26 26 H 1.09001 * 109.46544 * 303.74105 * 1 2 3 27 27 H 1.08998 * 109.46667 * 63.73966 * 1 2 3 28 28 H 0.97002 * 120.00556 * 180.02562 * 7 6 4 29 29 H 1.00902 * 110.99820 * 151.04917 * 12 2 1 30 30 H 1.08999 * 109.50044 * 63.24301 * 15 13 12 31 31 H 1.09005 * 109.54625 * 303.12418 * 15 13 12 32 32 H 1.08995 * 109.48457 * 297.66149 * 16 15 13 33 33 H 1.08993 * 109.49639 * 177.62137 * 16 15 13 34 34 H 1.08997 * 109.52512 * 182.92731 * 19 18 17 35 35 H 1.09000 * 109.52318 * 303.12175 * 19 18 17 36 36 H 1.08999 * 109.48255 * 297.52418 * 20 19 18 37 37 H 1.09007 * 109.48085 * 177.48662 * 20 19 18 38 38 H 1.08995 * 109.48274 * 301.19723 * 22 21 20 39 39 H 1.08994 * 109.48505 * 181.14978 * 22 21 20 40 40 H 1.08999 * 109.53088 * 56.87846 * 23 18 17 41 41 H 1.09000 * 109.52610 * 177.00840 * 23 18 17 42 42 H 1.09005 * 109.52516 * 62.40139 * 24 18 17 43 43 H 1.09002 * 109.52768 * 182.53048 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.5785 -1.6370 -1.1339 6 6 1.7946 -0.1772 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1763 -1.1777 -4.0103 9 1 1.0244 -2.0609 -4.3244 10 1 2.4229 -0.2609 -5.1522 11 1 3.3849 -2.0067 -3.7711 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3468 14 1 1.2609 0.9365 2.2909 15 6 3.4179 0.9756 2.3325 16 6 3.5072 1.8671 3.5739 17 8 3.3708 1.0622 4.7471 18 6 2.1243 0.3711 4.8382 19 6 2.0767 -0.4302 6.1419 20 6 2.1435 0.5358 7.3279 21 8 1.0647 1.4689 7.2418 22 6 1.0857 2.2796 6.0652 23 6 0.9759 1.3836 4.8284 24 6 1.9772 -0.5792 3.6480 25 1 -0.3633 -1.0254 0.0670 26 1 -0.3632 0.5708 0.8546 27 1 -0.3632 0.4547 -0.9216 28 1 1.1314 1.4106 -3.4723 29 1 2.9174 -1.1205 1.0286 30 1 3.4782 1.5925 1.4360 31 1 4.2402 0.2601 2.3381 32 1 2.7090 2.6087 3.5471 33 1 4.4727 2.3725 3.5901 34 1 1.1476 -0.9982 6.1866 35 1 2.9249 -1.1137 6.1805 36 1 3.0916 1.0733 7.3060 37 1 2.0651 -0.0257 8.2589 38 1 2.0198 2.8399 6.0264 39 1 0.2458 2.9738 6.0869 40 1 1.0374 1.9957 3.9286 41 1 0.0232 0.8542 4.8444 42 1 2.7687 -1.3280 3.6797 43 1 1.0065 -1.0731 3.6939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:02 Heat of formation + Delta-G solvation = -123.859829 kcal Electronic energy + Delta-G solvation = -22217.901237 eV Core-core repulsion = 19068.515114 eV Total energy + Delta-G solvation = -3149.386123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69581 -39.04990 -37.56083 -35.03531 -34.22115 -32.74741 -32.05053 -30.00613 -28.99359 -27.25976 -24.85584 -24.72360 -24.18199 -22.15175 -21.35205 -20.32044 -18.53708 -17.60975 -17.07645 -17.02196 -16.85494 -16.37368 -15.96139 -15.63228 -15.55707 -15.21326 -14.97204 -14.48472 -14.11473 -13.75700 -13.57792 -13.41952 -13.28073 -12.92760 -12.84754 -12.76091 -12.48243 -12.41204 -12.33264 -12.22177 -12.06637 -12.00544 -11.67877 -11.38374 -11.03985 -10.92499 -10.64711 -10.55477 -10.20000 -9.01642 -8.19178 -6.28162 1.40040 1.42218 1.50651 2.39868 2.73790 2.98396 3.12898 3.40671 3.68777 3.79546 3.83304 3.95048 4.03263 4.15924 4.21883 4.32740 4.37570 4.41894 4.50107 4.65904 4.73908 4.78016 4.79436 4.81098 4.84240 4.91922 4.94751 5.02111 5.05853 5.10587 5.15225 5.23675 5.27242 5.29739 5.44459 5.65683 5.80601 6.13551 6.25844 6.28040 6.44931 6.77931 6.99156 7.41554 8.89662 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039981 B = 0.004235 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.170936 B = 6610.047458 C = 6666.327581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.218 3.782 3 H -0.023 1.023 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.681 5.681 13 C 0.089 3.911 14 H 0.059 0.941 15 C -0.176 4.176 16 C 0.068 3.932 17 O -0.377 6.377 18 C 0.119 3.881 19 C -0.136 4.136 20 C 0.063 3.937 21 O -0.399 6.399 22 C 0.068 3.932 23 C -0.182 4.182 24 C -0.116 4.116 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.332 0.668 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 0.912 17.543 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 H -0.005 1.005 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.021 4.021 14 H 0.077 0.923 15 C -0.216 4.216 16 C -0.009 4.009 17 O -0.296 6.296 18 C 0.079 3.921 19 C -0.174 4.174 20 C -0.014 4.014 21 O -0.318 6.318 22 C -0.009 4.009 23 C -0.219 4.219 24 C -0.154 4.154 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.628 0.784 17.844 17.935 hybrid contribution 0.837 0.259 -2.162 2.333 sum 2.465 1.043 15.682 15.908 Atomic orbital electron populations 1.21498 0.98113 0.98724 0.98284 1.18863 0.92115 0.91319 0.86781 1.00522 1.21540 1.36118 1.08225 0.91874 0.92475 1.25675 0.95088 0.95450 1.01942 1.70075 1.45787 1.15292 1.24513 0.85605 0.78756 0.78630 0.78854 1.20079 1.21017 1.19243 1.60722 1.32163 1.32813 1.05356 1.21626 0.95497 0.93407 0.91611 0.92314 1.22853 0.99267 1.00475 0.98995 1.22536 1.02716 0.92183 0.83455 1.87881 1.36520 1.63169 1.42021 1.21472 0.83777 0.91472 0.95340 1.22183 1.04288 0.98366 0.92520 1.22648 0.89778 0.90380 0.98558 1.87872 1.49849 1.52079 1.42010 1.22531 1.02462 0.92358 0.83532 1.22790 0.99739 0.99624 0.99778 1.22053 1.02809 0.98018 0.92568 0.94646 0.95711 0.94376 0.92844 0.85078 0.92927 0.91417 0.92647 0.87437 0.89150 0.89274 0.92749 0.86968 0.92807 0.87804 0.90877 0.90092 0.91399 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.27 9.26 71.99 0.67 -4.61 16 2 C 0.22 10.94 2.28 44.18 0.10 11.04 16 3 H -0.02 -1.28 7.14 -2.39 -0.02 -1.30 16 4 C -0.54 -29.48 8.48 25.60 0.22 -29.26 16 5 H 0.06 3.08 7.69 -2.91 -0.02 3.06 16 6 C 0.02 1.00 5.17 84.65 0.44 1.44 16 7 N -0.92 -52.92 12.16 21.45 0.26 -52.66 16 8 Si 0.96 43.35 29.55 68.60 2.03 45.38 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.68 -28.40 6.06 -472.42 -2.86 -31.27 16 13 C 0.09 3.06 2.06 45.09 0.09 3.16 16 14 H 0.06 2.18 5.72 -2.39 -0.01 2.16 16 15 C -0.18 -5.60 5.39 30.73 0.17 -5.44 16 16 C 0.07 1.75 6.52 72.01 0.47 2.22 16 17 O -0.38 -9.70 9.20 -148.98 -1.37 -11.07 16 18 C 0.12 2.90 0.69 -10.72 -0.01 2.89 16 19 C -0.14 -2.73 5.15 30.66 0.16 -2.57 16 20 C 0.06 1.19 6.70 72.02 0.48 1.68 16 21 O -0.40 -9.14 10.76 -148.98 -1.60 -10.74 16 22 C 0.07 1.44 6.70 72.02 0.48 1.92 16 23 C -0.18 -4.28 4.24 30.67 0.13 -4.15 16 24 C -0.12 -3.30 4.53 30.66 0.14 -3.17 16 25 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.02 1.07 7.48 -2.39 -0.02 1.06 16 27 H 0.04 2.03 6.83 -2.39 -0.02 2.01 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.33 13.81 7.97 -89.69 -0.71 13.10 16 30 H 0.05 1.91 7.52 -2.39 -0.02 1.89 16 31 H 0.07 2.14 8.09 -2.38 -0.02 2.12 16 32 H 0.06 1.37 6.29 -2.39 -0.02 1.36 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 37 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.05 1.14 7.82 -2.39 -0.02 1.12 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.85 5.01 -2.39 -0.01 1.84 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -60.20 323.18 0.26 -59.94 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.27 Total: 25.26 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.53 Total: -24.85 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.60 Total: -83.93 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -2.97 Total: -21.80 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -60.20 0.26 -59.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.917 kcal (2) G-P(sol) polarization free energy of solvation -60.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds