Wall clock time and date at job start Mon Mar 30 2020 01:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00202 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47525 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47599 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47505 * 179.97438 * 13 12 11 15 15 C 1.46850 * 110.99700 * 66.04332 * 14 13 12 16 16 C 1.53035 * 109.52200 * 185.84062 * 15 14 13 17 17 C 1.53119 * 109.27853 * 300.82363 * 16 15 14 18 18 C 1.53116 * 109.16332 * 57.65450 * 17 16 15 19 19 H 1.09002 * 109.50384 * 62.28685 * 18 17 16 20 20 C 1.50700 * 109.50715 * 182.36735 * 18 17 16 21 21 N 1.34777 * 119.99570 * 299.99795 * 20 18 17 22 22 O 1.21279 * 120.00435 * 120.00012 * 20 18 17 23 23 C 1.46842 * 111.00317 * 190.25566 * 14 13 12 24 24 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 26 26 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 27 27 H 1.00899 * 110.99908 * 56.04377 * 10 9 7 28 28 H 1.08999 * 109.46951 * 300.00194 * 11 10 9 29 29 H 1.09004 * 109.47188 * 59.99629 * 11 10 9 30 30 H 1.09007 * 109.46865 * 299.99689 * 12 11 10 31 31 H 1.09004 * 109.47341 * 59.99538 * 12 11 10 32 32 H 1.08999 * 109.46976 * 300.00071 * 13 12 11 33 33 H 1.09004 * 109.47088 * 59.99460 * 13 12 11 34 34 H 1.08998 * 109.46719 * 305.85919 * 15 14 13 35 35 H 1.08999 * 109.46200 * 65.83966 * 15 14 13 36 36 H 1.08999 * 109.50444 * 60.76605 * 16 15 14 37 37 H 1.08998 * 109.50586 * 180.84697 * 16 15 14 38 38 H 1.09004 * 109.52650 * 177.56457 * 17 16 15 39 39 H 1.09000 * 109.52367 * 297.74467 * 17 16 15 40 40 H 0.97000 * 120.00682 * 0.02562 * 21 20 18 41 41 H 0.96999 * 119.99913 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.45942 * 294.17992 * 23 14 13 43 43 H 1.09004 * 109.46463 * 54.14503 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 1.5053 -4.9071 0.0090 12 6 2.5301 -6.0431 0.0082 13 6 1.8008 -7.3880 0.0140 14 7 2.7848 -8.4788 0.0127 15 6 3.5554 -8.4938 1.2626 16 6 4.6636 -9.5448 1.1676 17 6 4.0368 -10.9190 0.9159 18 6 3.2006 -10.8630 -0.3655 19 1 3.8473 -10.6330 -1.2123 20 6 2.5331 -12.1954 -0.5895 21 7 3.2805 -13.3071 -0.7374 22 8 1.3234 -12.2673 -0.6367 23 6 2.1348 -9.7737 -0.2260 24 1 -0.4850 0.8401 0.0004 25 1 0.6281 -2.5552 0.8979 26 1 0.6206 -2.5586 -0.8820 27 1 2.8435 -3.5470 0.7828 28 1 0.8835 -4.9798 0.9013 29 1 0.8773 -4.9832 -0.8787 30 1 3.1523 -5.9706 -0.8839 31 1 3.1579 -5.9668 0.8961 32 1 1.1790 -7.4603 0.9063 33 1 1.1728 -7.4646 -0.8736 34 1 3.9992 -7.5120 1.4276 35 1 2.8941 -8.7378 2.0940 36 1 5.3334 -9.2942 0.3450 37 1 5.2259 -9.5663 2.1011 38 1 4.8248 -11.6640 0.8044 39 1 3.3973 -11.1872 1.7568 40 1 4.2481 -13.2497 -0.6994 41 1 2.8509 -14.1648 -0.8812 42 1 1.4801 -10.0114 0.6124 43 1 1.5468 -9.7215 -1.1424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569960708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:09 Heat of formation + Delta-G solvation = -85.159365 kcal Electronic energy + Delta-G solvation = -20269.733837 eV Core-core repulsion = 17154.318643 eV Total energy + Delta-G solvation = -3115.415194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17403 -39.37927 -37.52606 -35.56341 -34.75086 -34.11142 -32.04933 -31.65117 -28.60441 -26.15560 -25.28497 -23.98610 -23.10395 -22.41305 -21.33113 -20.56596 -18.57830 -18.40001 -17.71358 -16.99531 -16.73991 -16.55761 -16.10079 -15.78182 -15.55680 -15.16303 -14.96191 -14.82960 -14.39567 -14.34647 -14.02041 -13.57547 -13.49385 -13.12929 -12.79700 -12.69570 -12.51940 -12.36678 -12.28517 -12.00353 -11.91244 -11.62925 -11.45821 -11.38515 -11.20745 -10.83577 -10.67674 -10.64814 -9.34390 -9.14249 -8.23412 -6.35111 1.41546 1.42776 1.56973 1.61353 2.39335 2.43590 3.00300 3.09793 3.58718 3.64799 3.80510 3.91342 4.02764 4.18290 4.27794 4.32368 4.36279 4.43145 4.52825 4.58726 4.71536 4.73319 4.74762 4.79292 4.94932 4.98377 5.05417 5.10842 5.18543 5.23386 5.25565 5.35048 5.43829 5.61759 5.90163 6.00342 6.04273 6.12592 6.43366 6.45978 6.71961 6.88698 7.34844 7.36090 8.88711 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.002517 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.922653 B =11121.722181 C =11501.504283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.206 3.794 10 N -0.689 5.689 11 C 0.061 3.939 12 C -0.091 4.091 13 C 0.063 3.937 14 N -0.537 5.537 15 C 0.041 3.959 16 C -0.110 4.110 17 C -0.105 4.105 18 C -0.098 4.098 19 H 0.123 0.877 20 C 0.521 3.479 21 N -0.833 5.833 22 O -0.597 6.597 23 C 0.076 3.924 24 H 0.265 0.735 25 H -0.041 1.041 26 H -0.002 1.002 27 H 0.336 0.664 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.419 0.581 41 H 0.407 0.593 42 H 0.022 0.978 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.805 -27.405 2.026 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.319 5.319 11 C -0.070 4.070 12 C -0.129 4.129 13 C -0.065 4.065 14 N -0.261 5.261 15 C -0.087 4.087 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.120 4.120 19 H 0.141 0.859 20 C 0.306 3.694 21 N -0.397 5.397 22 O -0.478 6.478 23 C -0.052 4.052 24 H 0.074 0.926 25 H -0.023 1.023 26 H 0.016 0.984 27 H 0.153 0.847 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.251 0.749 41 H 0.238 0.762 42 H 0.040 0.960 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.315 -27.079 0.955 29.763 hybrid contribution -1.152 0.511 1.429 1.905 sum 11.163 -26.568 2.384 28.917 Atomic orbital electron populations 1.70111 1.07929 1.28014 1.51580 1.26037 0.95852 1.03658 0.94535 0.85209 0.78946 0.77921 0.77756 1.18430 1.20378 1.20229 1.21586 0.93903 0.91311 1.50536 0.91509 1.19224 0.90724 0.89146 0.93065 1.60519 1.20342 1.01586 1.49502 1.21897 0.96205 0.89747 0.99105 1.21358 0.97343 0.91176 1.03053 1.21957 0.93430 0.90449 1.00687 1.61895 1.25619 1.02699 1.35875 1.22333 0.95986 1.01157 0.89210 1.21573 0.96855 0.92666 1.03633 1.21595 0.99084 0.99035 0.94614 1.21291 0.97944 0.90236 1.02529 0.85886 1.20845 0.86735 0.87464 0.74318 1.43691 1.11889 1.09524 1.74564 1.90746 1.16696 1.87602 1.52748 1.21739 0.94743 0.88233 1.00534 0.92586 1.02310 0.98378 0.84687 0.96871 0.92676 0.90882 0.91364 0.95294 0.90945 0.90146 0.95633 0.90090 0.89295 0.87939 0.92590 0.74919 0.76159 0.95967 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.98 44.84 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.07 3.77 7.81 -2.92 -0.02 3.75 16 9 C 0.21 11.51 5.44 85.56 0.47 11.97 16 10 N -0.69 -30.82 6.49 -517.94 -3.36 -34.18 16 11 C 0.06 2.23 5.69 86.30 0.49 2.72 16 12 C -0.09 -2.58 5.41 30.59 0.17 -2.42 16 13 C 0.06 1.60 4.96 86.30 0.43 2.03 16 14 N -0.54 -11.66 4.65 -896.38 -4.17 -15.83 16 15 C 0.04 0.74 5.29 86.32 0.46 1.20 16 16 C -0.11 -1.26 6.09 30.65 0.19 -1.08 16 17 C -0.11 -1.05 5.16 30.67 0.16 -0.89 16 18 C -0.10 -1.41 2.69 -11.49 -0.03 -1.45 16 19 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 20 C 0.52 8.76 7.43 87.66 0.65 9.41 16 21 N -0.83 -6.02 8.78 -173.53 -1.52 -7.55 16 22 O -0.60 -16.48 16.82 -3.03 -0.05 -16.53 16 23 C 0.08 1.64 4.04 86.33 0.35 1.99 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.34 14.01 8.72 -89.69 -0.78 13.22 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 1.80 6.44 -2.38 -0.02 1.78 16 32 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.07 1.89 7.98 -2.38 -0.02 1.87 16 34 H 0.08 1.52 6.22 -2.39 -0.01 1.50 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.35 7.64 -2.38 -0.02 0.33 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.42 0.12 8.30 -92.71 -0.77 -0.65 16 41 H 0.41 2.45 8.93 -92.71 -0.83 1.62 16 42 H 0.02 0.55 8.08 -2.39 -0.02 0.53 16 43 H 0.07 1.62 7.99 -2.39 -0.02 1.60 16 Total: -1.00 -74.70 343.83 -4.15 -78.85 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -1.37 Total: 13.16 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.02 Total: -7.27 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -8.77 Total: -115.07 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.70 -4.15 -78.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569960708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.313 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds