Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41362 * 2 1 4 4 C 1.55126 * 110.34401 * 122.44425 * 2 1 3 5 5 C 1.55159 * 101.48571 * 156.05840 * 4 2 1 6 6 H 1.09001 * 110.87204 * 82.76913 * 5 4 2 7 7 N 1.46900 * 110.72114 * 205.97136 * 5 4 2 8 8 C 1.54325 * 102.94034 * 324.33477 * 5 4 2 9 9 N 1.47019 * 107.27097 * 22.19267 * 8 5 4 10 10 C 1.34778 * 125.64309 * 181.02451 * 9 8 5 11 11 O 1.21590 * 119.99970 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00313 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99733 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46770 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47235 * 59.99787 * 14 13 12 16 16 C 1.53001 * 109.46948 * 300.00012 * 14 13 12 17 17 C 1.50698 * 109.47197 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99868 * 354.24304 * 17 14 13 19 19 C 1.37875 * 120.00094 * 174.23568 * 17 14 13 20 20 N 1.31518 * 120.00074 * 209.34478 * 19 17 14 21 21 Si 1.86792 * 119.99951 * 29.35119 * 19 17 14 22 22 H 1.48501 * 109.47464 * 179.97438 * 21 19 17 23 23 H 1.48508 * 109.47045 * 299.99598 * 21 19 17 24 24 H 1.48504 * 109.47262 * 59.99647 * 21 19 17 25 25 H 1.09000 * 109.47103 * 180.84313 * 1 2 3 26 26 H 1.09009 * 109.46744 * 300.83964 * 1 2 3 27 27 H 1.09002 * 109.47444 * 60.83881 * 1 2 3 28 28 H 1.09005 * 111.19078 * 37.95289 * 4 2 1 29 29 H 1.09004 * 110.90766 * 274.03952 * 4 2 1 30 30 H 1.00892 * 111.00117 * 174.97317 * 7 5 4 31 31 H 1.00897 * 110.99749 * 298.92831 * 7 5 4 32 32 H 1.09001 * 109.88137 * 262.77464 * 8 5 4 33 33 H 1.09001 * 109.88239 * 141.61292 * 8 5 4 34 34 H 0.96999 * 120.00186 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.47212 * 60.00225 * 13 12 10 36 36 H 1.08997 * 109.47046 * 299.99495 * 13 12 10 37 37 H 1.08999 * 109.47349 * 175.40317 * 15 14 13 38 38 H 1.08993 * 109.47408 * 295.41207 * 15 14 13 39 39 H 1.09012 * 109.46623 * 55.40732 * 15 14 13 40 40 H 1.09001 * 109.47011 * 305.30843 * 16 14 13 41 41 H 1.08995 * 109.47309 * 65.31639 * 16 14 13 42 42 H 1.09005 * 109.46322 * 185.31635 * 16 14 13 43 43 H 0.97006 * 119.99913 * 354.99693 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4798 -1.1973 0.7332 6 1 4.1954 -0.3870 0.8728 7 7 3.9333 -2.4131 1.4216 8 6 3.2524 -1.4724 -0.7682 9 7 2.0431 -0.7383 -1.1683 10 6 1.4972 -0.7362 -2.4006 11 8 0.4912 -0.0891 -2.6188 12 7 2.0664 -1.4514 -3.3910 13 6 1.4733 -1.4485 -4.7306 14 6 2.3078 -2.3325 -5.6597 15 6 2.3333 -3.7625 -5.1162 16 6 3.7363 -1.7893 -5.7332 17 6 1.6974 -2.3302 -7.0375 18 1 0.7543 -1.8326 -7.2095 19 6 2.3429 -2.9630 -8.0786 20 7 2.1893 -2.5270 -9.3098 21 14 3.4354 -4.4398 -7.7403 22 1 4.0086 -4.9346 -9.0178 23 1 4.5352 -4.0426 -6.8248 24 1 2.6307 -5.5168 -7.1094 25 1 -0.3633 -1.0275 0.0151 26 1 -0.3633 0.5269 0.8824 27 1 -0.3634 0.5007 -0.8974 28 1 1.4549 -1.6555 1.4390 29 1 2.1373 -0.1322 2.1012 30 1 4.8129 -2.7345 1.0460 31 1 3.9988 -2.2620 2.4170 32 1 3.1089 -2.5404 -0.9318 33 1 4.1081 -1.1188 -1.3436 34 1 2.8692 -1.9673 -3.2171 35 1 1.4556 -0.4299 -5.1180 36 1 0.4555 -1.8351 -4.6781 37 1 2.8584 -4.4091 -5.8191 38 1 2.8476 -3.7769 -4.1553 39 1 1.3117 -4.1202 -4.9868 40 1 3.7114 -0.7409 -6.0302 41 1 4.2098 -1.8790 -4.7556 42 1 4.3050 -2.3613 -6.4664 43 1 1.5662 -1.8069 -9.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891953607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -19.399350 kcal Electronic energy + Delta-G solvation = -21830.008316 eV Core-core repulsion = 18717.444690 eV Total energy + Delta-G solvation = -3112.563626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29035 -38.08251 -36.51502 -33.94873 -33.47710 -31.87836 -30.82607 -28.81588 -26.33129 -26.03704 -25.57040 -24.29676 -22.12646 -20.92211 -19.52206 -19.07473 -17.68978 -16.96623 -16.63437 -15.63512 -15.45953 -15.06986 -14.69855 -14.38814 -13.99193 -13.74499 -13.48085 -13.24477 -12.66690 -12.63598 -12.53043 -12.22220 -12.02895 -11.93652 -11.77958 -11.40385 -11.26805 -11.19533 -11.06764 -10.57287 -10.15414 -10.04965 -9.90458 -9.50922 -9.15131 -9.05353 -8.86921 -8.69582 -8.21922 -8.02137 -6.54320 -4.05817 2.83193 3.33169 3.39619 3.55380 3.62046 3.99260 4.21718 4.30936 4.44682 4.59809 4.82015 5.00620 5.16591 5.19148 5.32153 5.46418 5.51781 5.56083 5.69356 5.79588 5.84135 6.11428 6.13087 6.14161 6.23490 6.41857 6.50286 6.59325 6.62414 6.69720 6.73032 6.76477 6.89143 6.99918 7.08179 7.30270 7.35035 7.51233 8.15779 8.35840 8.36720 8.89721 8.99498 9.58517 10.86103 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.004758 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.738504 B = 5883.539670 C = 6556.971735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.069 0.931 4 C -0.124 4.124 5 C 0.078 3.922 6 H 0.053 0.947 7 N -0.840 5.840 8 C 0.105 3.895 9 N -0.637 5.637 10 C 0.719 3.281 11 O -0.590 6.590 12 N -0.736 5.736 13 C 0.161 3.839 14 C 0.035 3.965 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.608 4.608 18 H 0.059 0.941 19 C 0.040 3.960 20 N -0.889 5.889 21 Si 1.058 2.942 22 H -0.300 1.300 23 H -0.277 1.277 24 H -0.287 1.287 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.345 0.655 31 H 0.345 0.655 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.391 0.609 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.025 0.975 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 1.653 22.100 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.087 0.913 4 C -0.162 4.162 5 C -0.034 4.034 6 H 0.070 0.930 7 N -0.371 5.371 8 C -0.019 4.019 9 N -0.378 5.378 10 C 0.421 3.579 11 O -0.468 6.468 12 N -0.390 5.390 13 C 0.038 3.962 14 C 0.034 3.966 15 C -0.204 4.204 16 C -0.197 4.197 17 C -0.645 4.645 18 H 0.077 0.923 19 C -0.168 4.168 20 N -0.522 5.522 21 Si 0.892 3.108 22 H -0.228 1.228 23 H -0.205 1.205 24 H -0.215 1.215 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.785 0.743 20.769 21.326 hybrid contribution 0.276 1.312 1.158 1.771 sum 5.061 2.055 21.927 22.597 Atomic orbital electron populations 1.22173 0.93742 1.02737 1.03493 1.21680 0.95469 0.94640 0.83078 0.91278 1.23006 0.95412 1.00777 0.97037 1.22294 0.96511 0.91262 0.93327 0.92953 1.58633 1.37186 1.32853 1.08410 1.21913 0.87967 0.97677 0.94329 1.47571 1.29135 1.52216 1.08858 1.15549 0.82795 0.80578 0.78979 1.90829 1.26290 1.48227 1.81500 1.45567 1.31466 1.51255 1.10713 1.21393 0.96554 1.00288 0.77931 1.18653 0.92509 0.90334 0.95144 1.22337 1.00552 0.99785 0.97692 1.22207 0.98080 1.01121 0.98247 1.21604 1.10299 1.40320 0.92314 0.92261 1.25698 0.98403 0.99747 0.92905 1.70875 1.31365 1.27622 1.22299 0.84054 0.76238 0.76578 0.73963 1.22780 1.20486 1.21519 0.92703 0.92587 0.88987 0.89416 0.90313 0.84233 0.84153 0.90598 0.91991 0.77416 0.92467 0.92576 0.94024 0.95606 0.93098 0.93603 0.96245 0.92583 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.71 37.16 0.32 -1.76 16 2 C 0.16 1.83 3.78 -66.30 -0.25 1.58 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.07 6.19 -24.46 -0.15 -1.23 16 5 C 0.08 0.64 4.08 -65.88 -0.27 0.37 16 6 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 7 N -0.84 -5.74 9.27 -3.11 -0.03 -5.77 16 8 C 0.11 1.15 5.89 -3.07 -0.02 1.13 16 9 N -0.64 -8.99 3.24 -168.59 -0.55 -9.53 16 10 C 0.72 13.14 8.27 -86.92 -0.72 12.42 16 11 O -0.59 -12.71 13.99 5.29 0.07 -12.64 16 12 N -0.74 -13.34 4.98 -65.22 -0.32 -13.66 16 13 C 0.16 3.47 4.51 -4.04 -0.02 3.45 16 14 C 0.04 0.80 0.50 -155.66 -0.08 0.72 16 15 C -0.15 -3.08 7.74 37.16 0.29 -2.79 16 16 C -0.14 -2.97 7.90 37.16 0.29 -2.68 16 17 C -0.61 -16.65 8.42 -34.44 -0.29 -16.94 16 18 H 0.06 1.77 7.99 -52.49 -0.42 1.35 16 19 C 0.04 1.12 5.06 -17.82 -0.09 1.03 16 20 N -0.89 -26.77 13.70 55.43 0.76 -26.02 16 21 Si 1.06 25.20 23.53 -169.99 -4.00 21.20 16 22 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.02 5.73 56.52 0.32 -5.70 16 24 H -0.29 -6.51 6.69 56.52 0.38 -6.13 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.09 1.48 5.88 -51.93 -0.31 1.17 16 28 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.34 1.94 9.07 -39.30 -0.36 1.58 16 31 H 0.35 1.75 9.07 -39.29 -0.36 1.39 16 32 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.39 6.32 5.22 -40.82 -0.21 6.11 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.90 2.27 -51.93 -0.12 0.79 16 38 H 0.02 0.45 7.00 -51.93 -0.36 0.09 16 39 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.34 7.02 -51.93 -0.36 -0.02 16 42 H 0.06 1.26 4.40 -51.93 -0.23 1.03 16 43 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -31.54 323.44 -7.21 -38.75 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.04 Total: 7.48 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.98 Total: -4.69 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.14 Total: -54.98 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -4.00 Total: 21.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.54 -7.21 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891953607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.353 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds