Wall clock time and date at job start Mon Mar 30 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 N 1.46891 * 109.47100 * 185.86819 * 3 2 1 5 5 C 1.46898 * 111.00129 * 170.21415 * 4 3 2 6 6 H 1.08997 * 109.47399 * 311.40992 * 5 4 3 7 7 C 1.53002 * 109.47400 * 71.40943 * 5 4 3 8 8 C 1.52999 * 109.47379 * 191.40947 * 5 4 3 9 9 C 1.52997 * 109.47307 * 65.05238 * 8 5 4 10 10 C 1.50697 * 109.47531 * 175.01589 * 9 8 5 11 11 H 1.08004 * 119.99849 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00252 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99891 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47448 * 89.99860 * 14 12 10 16 16 H 1.48498 * 109.46975 * 209.99979 * 14 12 10 17 17 H 1.48501 * 109.46924 * 329.99703 * 14 12 10 18 18 C 1.46901 * 111.00405 * 294.17102 * 4 3 2 19 19 C 1.53178 * 109.54654 * 89.21432 * 18 4 3 20 20 C 1.53098 * 109.16022 * 183.24564 * 19 18 4 21 21 O 1.42900 * 109.48878 * 57.46976 * 20 19 18 22 22 C 1.42899 * 114.10123 * 298.89381 * 21 20 19 23 23 C 1.53096 * 109.41677 * 61.15508 * 22 21 20 24 24 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46783 * 299.99312 * 1 2 3 26 26 H 1.08992 * 109.47650 * 59.99504 * 1 2 3 27 27 H 1.08999 * 109.47052 * 240.00261 * 2 1 3 28 28 H 1.09001 * 109.46969 * 120.00161 * 2 1 3 29 29 H 1.09001 * 109.46911 * 65.86999 * 3 2 1 30 30 H 1.08999 * 109.47260 * 305.87521 * 3 2 1 31 31 H 1.08988 * 109.47278 * 185.81893 * 7 5 4 32 32 H 1.09004 * 109.46699 * 305.82596 * 7 5 4 33 33 H 1.09007 * 109.46702 * 65.81784 * 7 5 4 34 34 H 1.09005 * 109.47245 * 305.05879 * 8 5 4 35 35 H 1.08998 * 109.47317 * 185.05733 * 8 5 4 36 36 H 1.09007 * 109.47320 * 55.02253 * 9 8 5 37 37 H 1.09004 * 109.47585 * 295.02100 * 9 8 5 38 38 H 0.97003 * 119.99905 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.54392 * 209.39123 * 18 4 3 40 40 H 1.09004 * 109.51903 * 303.06312 * 19 18 4 41 41 H 1.09001 * 109.52432 * 63.24821 * 19 18 4 42 42 H 1.09001 * 109.40344 * 297.49403 * 20 19 18 43 43 H 1.09000 * 109.49361 * 177.50778 * 20 19 18 44 44 H 1.09002 * 109.48351 * 301.17412 * 22 21 20 45 45 H 1.09006 * 109.49483 * 181.14526 * 22 21 20 46 46 H 1.08999 * 109.52209 * 182.48745 * 23 22 21 47 47 H 1.08993 * 109.57251 * 62.32770 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5021 1.4450 -0.1416 5 6 4.0058 2.8045 -0.3782 6 1 3.4218 3.2760 -1.1685 7 6 3.8812 3.6254 0.9069 8 6 5.4749 2.7378 -0.8003 9 6 5.5860 2.0257 -2.1498 10 6 7.0159 2.0677 -2.6238 11 1 7.7701 2.5533 -2.0224 12 6 7.3613 1.4861 -3.8253 13 7 6.4428 0.8952 -4.5579 14 14 9.1339 1.5375 -4.4125 15 1 9.8568 0.3417 -3.9099 16 1 9.1634 1.5461 -5.8971 17 1 9.7905 2.7658 -3.8972 18 6 4.1458 0.8420 1.0331 19 6 4.2936 -0.6674 0.8183 20 6 4.8906 -1.2984 2.0790 21 8 4.0555 -1.0041 3.2007 22 6 3.9207 0.3913 3.4777 23 6 3.2826 1.0898 2.2741 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7650 1.9251 0.9379 30 1 1.5933 1.9858 -0.8327 31 1 4.1574 4.6602 0.7052 32 1 2.8521 3.5869 1.2643 33 1 4.5453 3.2136 1.6670 34 1 6.0436 2.1870 -0.0510 35 1 5.8738 3.7483 -0.8887 36 1 4.9471 2.5255 -2.8781 37 1 5.2697 0.9883 -2.0405 38 1 6.6857 0.4864 -5.4034 39 1 5.1299 1.2876 1.1785 40 1 3.3146 -1.1049 0.6221 41 1 4.9526 -0.8518 -0.0301 42 1 5.8869 -0.8909 2.2508 43 1 4.9570 -2.3785 1.9487 44 1 4.9043 0.8209 3.6678 45 1 3.2884 0.5286 4.3549 46 1 3.2195 2.1609 2.4659 47 1 2.2825 0.6899 2.1078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:16 Heat of formation + Delta-G solvation = -51.829613 kcal Electronic energy + Delta-G solvation = -22750.326571 eV Core-core repulsion = 19739.897006 eV Total energy + Delta-G solvation = -3010.429564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.29585 -37.67705 -34.59677 -32.99487 -32.29984 -31.08942 -30.21299 -28.81768 -25.95003 -24.95929 -23.90447 -23.44407 -21.34117 -20.57787 -20.23939 -18.77013 -16.46393 -16.12875 -16.10277 -15.69186 -15.09226 -14.82944 -14.41725 -14.23209 -13.74084 -13.30035 -13.12559 -12.91391 -12.72171 -12.46278 -12.31753 -12.03204 -11.86740 -11.69394 -11.47758 -11.20043 -11.08113 -11.04835 -10.85311 -10.74892 -10.64010 -10.43326 -10.27317 -10.05186 -9.80985 -9.58919 -9.33158 -9.18380 -8.88555 -8.23711 -7.72760 -5.89152 -3.90640 3.36111 3.42465 3.45462 3.94269 4.18762 4.53137 4.86402 4.98106 5.06538 5.11411 5.19118 5.27905 5.33799 5.43832 5.46223 5.49839 5.52620 5.58504 5.59910 5.64727 5.72887 5.77544 5.83787 5.87755 5.91764 6.00530 6.10825 6.12514 6.15421 6.25059 6.32095 6.36389 6.42083 6.54453 6.65454 6.69199 6.88602 7.27274 7.29139 7.57995 7.64613 7.84465 8.06811 8.21548 8.56478 9.18405 9.72147 11.21671 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.005329 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.398605 B = 5253.362240 C = 5570.386298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.051 3.949 4 N -0.511 5.511 5 C 0.081 3.919 6 H 0.077 0.923 7 C -0.185 4.185 8 C -0.101 4.101 9 C 0.033 3.967 10 C -0.519 4.519 11 H 0.050 0.950 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.087 3.913 19 C -0.157 4.157 20 C 0.060 3.940 21 O -0.388 6.388 22 C 0.065 3.935 23 C -0.200 4.200 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.009 0.991 37 H 0.030 0.970 38 H 0.258 0.742 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 -0.514 14.300 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.077 4.077 4 N -0.233 5.233 5 C -0.028 4.028 6 H 0.095 0.905 7 C -0.243 4.243 8 C -0.139 4.139 9 C -0.004 4.004 10 C -0.558 4.558 11 H 0.068 0.932 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.021 4.021 19 C -0.194 4.194 20 C -0.017 4.017 21 O -0.306 6.306 22 C -0.012 4.012 23 C -0.239 4.239 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.407 -1.018 13.795 16.728 hybrid contribution 0.949 0.819 0.045 1.254 sum -8.458 -0.199 13.840 16.221 Atomic orbital electron populations 1.21748 0.96325 1.01353 1.01336 1.21912 0.94748 0.97159 1.03178 1.22211 0.88647 0.96859 0.99935 1.62250 1.03896 1.20028 1.37107 1.21915 0.98854 0.86682 0.95301 0.90521 1.22696 1.00606 1.01108 0.99920 1.21728 0.91309 1.00095 1.00757 1.18961 0.95614 0.96432 0.89419 1.21346 0.94769 1.35302 1.04378 0.93203 1.24986 0.96786 0.95649 0.96901 1.69978 1.32619 1.37491 1.13220 0.86705 0.85815 0.78283 0.77822 1.20802 1.21344 1.20059 1.21656 0.97856 0.95179 0.87439 1.22540 1.03506 0.95142 0.98255 1.22641 0.92973 1.00521 0.85541 1.87875 1.70037 1.23571 1.49164 1.22489 0.99676 0.81946 0.97096 1.23309 1.01906 1.01691 0.96958 0.92864 0.93337 0.92818 0.90753 0.90822 0.94673 0.91392 0.92571 0.93295 0.92534 0.93583 0.93329 0.97283 0.95197 0.93237 0.90062 0.89917 0.89545 0.93362 0.88999 0.93577 0.89572 0.90441 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.68 4.20 -26.73 -0.11 -1.80 16 3 C 0.05 0.70 4.08 -3.83 -0.02 0.68 16 4 N -0.51 -8.16 3.92 -218.51 -0.86 -9.02 16 5 C 0.08 1.35 2.28 -67.71 -0.15 1.19 16 6 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 7 C -0.18 -2.50 7.43 37.16 0.28 -2.22 16 8 C -0.10 -2.06 4.56 -26.73 -0.12 -2.19 16 9 C 0.03 0.85 4.80 -27.89 -0.13 0.72 16 10 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 11 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 14 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 C 0.09 1.27 1.47 -67.53 -0.10 1.17 16 19 C -0.16 -2.28 5.40 -26.59 -0.14 -2.42 16 20 C 0.06 0.78 6.84 37.21 0.25 1.03 16 21 O -0.39 -5.21 10.77 -35.23 -0.38 -5.59 16 22 C 0.07 0.75 6.84 37.21 0.25 1.01 16 23 C -0.20 -2.41 3.62 -26.59 -0.10 -2.51 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.07 0.94 4.21 -51.93 -0.22 0.72 16 29 H 0.04 0.44 4.82 -51.93 -0.25 0.19 16 30 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 31 H 0.06 0.73 8.14 -51.94 -0.42 0.31 16 32 H 0.05 0.60 5.94 -51.93 -0.31 0.29 16 33 H 0.06 0.75 5.99 -51.92 -0.31 0.44 16 34 H 0.05 0.93 6.25 -51.93 -0.32 0.61 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.03 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.30 5.24 -51.93 -0.27 1.03 16 40 H 0.08 1.18 4.54 -51.93 -0.24 0.94 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.89 4.82 -51.93 -0.25 0.64 16 47 H 0.08 1.02 4.54 -51.93 -0.24 0.78 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.21 338.58 -8.80 -39.01 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.25 Total: 0.22 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.13 Total: -20.14 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.12 Total: -35.53 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.38 Total: -5.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.21 -8.80 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.820 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds