Wall clock time and date at job start Mon Mar 30 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47653 * 270.00393 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47160 * 150.00205 * 3 2 1 7 7 C 1.38797 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00443 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 S 1.81401 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.76206 * 102.99841 * 179.97438 * 13 12 11 15 15 C 1.39030 * 120.05097 * 359.72920 * 14 13 12 16 16 C 1.38092 * 120.02535 * 179.69416 * 15 14 13 17 17 C 1.38226 * 120.13670 * 0.59864 * 16 15 14 18 18 C 1.38784 * 120.10346 * 359.67787 * 17 16 15 19 19 O 1.35906 * 120.01609 * 179.97438 * 18 17 16 20 20 C 1.38590 * 119.97071 * 0.02562 * 18 17 16 21 21 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 23 23 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 24 24 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 25 25 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 28 28 H 1.07999 * 119.98416 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.92892 * 180.29840 * 16 15 14 30 30 H 1.08004 * 119.94871 * 179.69944 * 17 16 15 31 31 H 0.96702 * 113.99839 * 270.02021 * 19 18 17 32 32 H 1.08000 * 120.06982 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5958 -3.2363 -0.0008 12 6 5.8615 -4.7430 0.0001 13 16 7.6508 -5.0415 -0.0006 14 6 7.7592 -6.8002 0.0013 15 6 6.6009 -7.5692 0.0085 16 6 6.6865 -8.9474 0.0036 17 6 7.9226 -9.5660 0.0040 18 6 9.0824 -8.8038 0.0027 19 8 10.2969 -9.4139 0.0037 20 6 9.0017 -7.4203 0.0014 21 1 -0.4850 0.8401 0.0004 22 1 3.6434 -3.4318 -0.8906 23 1 3.6441 -3.4313 0.8893 24 1 6.0387 -2.7891 0.8891 25 1 6.0387 -2.7893 -0.8908 26 1 5.4185 -5.1906 -0.8896 27 1 5.4186 -5.1895 0.8903 28 1 5.6339 -7.0884 0.0133 29 1 5.7857 -9.5433 0.0043 30 1 7.9860 -10.6442 0.0051 31 1 10.6482 -9.5892 0.8874 32 1 9.9032 -6.8256 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185655607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:21 Heat of formation + Delta-G solvation = -38.345304 kcal Electronic energy + Delta-G solvation = -14737.349770 eV Core-core repulsion = 12107.792725 eV Total energy + Delta-G solvation = -2629.557044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86815 -36.97899 -34.60059 -32.48169 -31.35682 -30.18204 -27.24493 -25.67217 -23.36133 -22.83809 -21.49202 -19.01942 -17.55302 -16.92809 -16.56751 -15.93690 -15.47836 -15.28821 -15.02117 -14.43771 -14.26786 -13.90883 -13.21005 -12.92611 -12.64874 -12.61395 -12.40263 -12.09837 -11.66783 -11.22980 -11.10486 -10.94410 -10.76185 -10.31114 -10.20132 -9.97761 -9.84456 -9.07786 -9.04777 -8.63666 -7.59666 -7.00695 -6.32548 -4.05920 0.82635 0.95624 1.30186 2.26181 2.95781 3.22637 3.27550 3.42469 3.52496 3.87858 4.27794 4.55684 4.70951 4.77032 4.83443 4.83936 4.99741 5.06413 5.15832 5.32720 5.35937 5.52503 5.56980 5.67461 5.88766 6.01945 6.04243 6.08446 6.26537 6.36596 6.47421 7.28771 7.91090 8.39689 9.13059 10.76845 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.057063 B = 0.002902 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.566141 B = 9645.570209 C =10107.807636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.504 4.504 8 H 0.088 0.912 9 S -0.210 6.210 10 C -0.080 4.080 11 C -0.087 4.087 12 C -0.100 4.100 13 S -0.110 6.110 14 C -0.064 4.064 15 C -0.143 4.143 16 C -0.082 4.082 17 C -0.156 4.156 18 C 0.121 3.879 19 O -0.498 6.498 20 C -0.130 4.130 21 H 0.271 0.729 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.391 0.609 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.972 -17.233 1.767 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.651 4.651 8 H 0.106 0.894 9 S 0.018 5.982 10 C -0.230 4.230 11 C -0.127 4.127 12 C -0.250 4.250 13 S 0.136 5.864 14 C -0.177 4.177 15 C -0.167 4.167 16 C -0.102 4.102 17 C -0.177 4.177 18 C 0.075 3.925 19 O -0.309 6.309 20 C -0.155 4.155 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.247 0.753 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.293 -15.261 1.158 23.851 hybrid contribution -1.732 -1.296 0.454 2.211 sum 16.561 -16.557 1.612 23.473 Atomic orbital electron populations 1.69935 1.05926 1.27785 1.48087 1.24795 0.94522 0.99047 0.93278 0.86672 0.81748 0.83188 0.79767 1.19313 1.20038 1.16132 1.22102 0.86930 0.97459 1.58643 0.89353 1.84205 1.11852 1.04626 1.97549 1.23034 0.96095 0.99823 1.04036 1.21100 0.96230 0.91143 1.04208 1.23833 0.93257 1.02077 1.05867 1.85643 1.10805 0.98447 1.91490 1.21726 0.95801 0.97676 1.02487 1.21304 0.97481 0.94452 1.03510 1.20964 0.97453 0.94073 0.97715 1.21421 0.91973 1.00445 1.03868 1.18295 0.84845 0.89806 0.99524 1.84827 1.32299 1.80097 1.33647 1.20989 0.96748 0.93893 1.03856 0.91909 0.91125 0.91097 0.90298 0.90297 0.89127 0.89125 0.85244 0.85150 0.85266 0.75253 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 2 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 3 Si 0.86 21.30 27.74 -169.99 -4.71 16.59 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 7 C -0.50 -14.38 10.04 30.94 0.31 -14.07 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 9 S -0.21 -5.00 19.41 -107.50 -2.09 -7.09 16 10 C -0.08 -1.46 5.67 37.15 0.21 -1.25 16 11 C -0.09 -1.27 5.22 -26.74 -0.14 -1.41 16 12 C -0.10 -1.20 4.33 37.16 0.16 -1.04 16 13 S -0.11 -1.33 21.92 -107.50 -2.36 -3.68 16 14 C -0.06 -0.72 6.11 -39.06 -0.24 -0.96 16 15 C -0.14 -1.49 9.36 -39.34 -0.37 -1.86 16 16 C -0.08 -0.74 10.03 -39.64 -0.40 -1.13 16 17 C -0.16 -1.38 9.98 -39.38 -0.39 -1.77 16 18 C 0.12 1.18 6.70 -39.25 -0.26 0.91 16 19 O -0.50 -4.12 13.50 -19.44 -0.26 -4.38 16 20 C -0.13 -1.39 9.73 -39.22 -0.38 -1.77 16 21 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 23 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.09 1.02 7.76 -51.92 -0.40 0.62 16 27 H 0.09 1.01 7.73 -51.92 -0.40 0.60 16 28 H 0.13 1.24 5.87 -52.49 -0.31 0.93 16 29 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.39 1.28 9.06 45.56 0.41 1.69 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -31.96 303.69 -8.90 -40.86 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -3.24 Total: 0.61 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.60 Total: -21.79 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.78 Total: -25.70 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.26 Total: -4.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -4.44 Total: -10.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.96 -8.90 -40.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185655607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds