Wall clock time and date at job start Mon Mar 30 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47653 * 270.00393 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47160 * 150.00205 * 3 2 1 7 7 C 1.38797 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00443 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 S 1.81401 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.76206 * 102.99841 * 179.97438 * 13 12 11 15 15 C 1.39030 * 120.05097 * 359.72920 * 14 13 12 16 16 C 1.38092 * 120.02535 * 179.69416 * 15 14 13 17 17 C 1.38226 * 120.13670 * 0.59864 * 16 15 14 18 18 C 1.38784 * 120.10346 * 359.67787 * 17 16 15 19 19 O 1.35906 * 120.01609 * 179.97438 * 18 17 16 20 20 C 1.38590 * 119.97071 * 0.02562 * 18 17 16 21 21 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 23 23 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 24 24 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 25 25 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 28 28 H 1.07999 * 119.98416 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.92892 * 180.29840 * 16 15 14 30 30 H 1.08004 * 119.94871 * 179.69944 * 17 16 15 31 31 H 0.96702 * 113.99839 * 270.02021 * 19 18 17 32 32 H 1.08000 * 120.06982 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5958 -3.2363 -0.0008 12 6 5.8615 -4.7430 0.0001 13 16 7.6508 -5.0415 -0.0006 14 6 7.7592 -6.8002 0.0013 15 6 6.6009 -7.5692 0.0085 16 6 6.6865 -8.9474 0.0036 17 6 7.9226 -9.5660 0.0040 18 6 9.0824 -8.8038 0.0027 19 8 10.2969 -9.4139 0.0037 20 6 9.0017 -7.4203 0.0014 21 1 -0.4850 0.8401 0.0004 22 1 3.6434 -3.4318 -0.8906 23 1 3.6441 -3.4313 0.8893 24 1 6.0387 -2.7891 0.8891 25 1 6.0387 -2.7893 -0.8908 26 1 5.4185 -5.1906 -0.8896 27 1 5.4186 -5.1895 0.8903 28 1 5.6339 -7.0884 0.0133 29 1 5.7857 -9.5433 0.0043 30 1 7.9860 -10.6442 0.0051 31 1 10.6482 -9.5892 0.8874 32 1 9.9032 -6.8256 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185655607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:21 Heat of formation + Delta-G solvation = -58.164870 kcal Electronic energy + Delta-G solvation = -14738.209211 eV Core-core repulsion = 12107.792725 eV Total energy + Delta-G solvation = -2630.416485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55888 -37.64250 -35.82531 -34.68954 -32.07597 -30.92992 -28.55513 -27.79897 -24.17537 -23.58898 -22.65088 -19.74710 -19.61284 -17.70003 -17.41447 -17.10592 -16.66776 -16.63490 -16.29025 -15.75748 -15.26135 -14.93145 -14.65028 -14.29908 -13.89078 -13.57065 -13.55204 -13.29017 -13.03563 -12.93822 -12.50722 -12.17726 -12.02494 -11.80426 -11.55907 -11.17023 -11.13015 -10.73670 -10.58837 -9.79717 -9.00751 -8.52556 -8.47292 -6.24168 0.09597 0.23422 0.38021 1.12933 1.32159 1.36748 1.47795 1.74715 2.24230 2.53146 2.66926 2.85745 3.25960 3.79759 3.86566 3.88394 4.04143 4.11672 4.16605 4.27616 4.45609 4.55983 4.63607 4.69547 4.87621 4.95847 5.13469 5.14003 5.33162 5.37658 5.69266 5.73136 6.09963 6.81205 6.91678 8.60380 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.057063 B = 0.002902 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.566141 B = 9645.570209 C =10107.807636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.228 1.228 7 C -0.521 4.521 8 H 0.053 0.947 9 S -0.219 6.219 10 C -0.066 4.066 11 C -0.076 4.076 12 C -0.091 4.091 13 S -0.126 6.126 14 C -0.077 4.077 15 C -0.156 4.156 16 C -0.082 4.082 17 C -0.156 4.156 18 C 0.120 3.880 19 O -0.507 6.507 20 C -0.145 4.145 21 H 0.277 0.723 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.413 0.587 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.539 -18.180 1.903 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.167 4.167 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.152 1.152 7 C -0.669 4.669 8 H 0.071 0.929 9 S 0.009 5.991 10 C -0.216 4.216 11 C -0.116 4.116 12 C -0.241 4.241 13 S 0.119 5.881 14 C -0.190 4.190 15 C -0.180 4.180 16 C -0.102 4.102 17 C -0.177 4.177 18 C 0.074 3.926 19 O -0.321 6.321 20 C -0.169 4.169 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.272 0.728 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.873 -16.230 1.310 25.692 hybrid contribution -2.164 -1.226 0.417 2.522 sum 17.710 -17.456 1.727 24.926 Atomic orbital electron populations 1.70036 1.07636 1.29116 1.49218 1.25770 0.95409 1.02763 0.92784 0.85728 0.80804 0.78715 0.80207 1.18662 1.18818 1.15157 1.22325 0.89940 0.96308 1.58292 0.92875 1.83916 1.07684 1.09947 1.97593 1.23077 0.98958 0.95387 1.04227 1.20941 0.93101 0.93249 1.04292 1.23658 0.93653 0.99939 1.06858 1.85624 1.10426 0.99990 1.92068 1.21743 0.96538 0.96857 1.03880 1.21483 0.97363 0.95242 1.03874 1.21280 0.98559 0.93710 0.96613 1.21715 0.91580 1.01582 1.02785 1.18393 0.85664 0.89537 0.98997 1.84771 1.31848 1.79780 1.35686 1.21104 0.96624 0.94624 1.04578 0.91396 0.90992 0.90880 0.90205 0.90296 0.88286 0.88101 0.84746 0.82743 0.83127 0.72755 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.39 13.97 21.65 0.30 -56.08 16 2 C 0.04 2.19 5.50 84.86 0.47 2.65 16 3 Si 0.92 43.75 27.74 68.60 1.90 45.66 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.23 -10.38 6.74 99.48 0.67 -9.71 16 7 C -0.52 -30.26 10.04 67.95 0.68 -29.57 16 8 H 0.05 3.34 8.03 -2.91 -0.02 3.32 16 9 S -0.22 -10.31 19.41 -56.49 -1.10 -11.40 16 10 C -0.07 -2.37 5.67 71.98 0.41 -1.96 16 11 C -0.08 -2.10 5.22 30.59 0.16 -1.94 16 12 C -0.09 -2.03 4.33 71.98 0.31 -1.71 16 13 S -0.13 -2.90 21.92 -56.49 -1.24 -4.14 16 14 C -0.08 -1.66 6.11 22.61 0.14 -1.52 16 15 C -0.16 -2.96 9.36 22.43 0.21 -2.75 16 16 C -0.08 -1.26 10.03 22.23 0.22 -1.04 16 17 C -0.16 -2.36 9.98 22.40 0.22 -2.14 16 18 C 0.12 2.11 6.70 22.48 0.15 2.26 16 19 O -0.51 -7.36 13.50 -92.49 -1.25 -8.61 16 20 C -0.14 -2.93 9.73 22.50 0.22 -2.71 16 21 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 22 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.10 2.05 7.76 -2.39 -0.02 2.03 16 27 H 0.10 2.05 7.73 -2.39 -0.02 2.03 16 28 H 0.13 2.32 5.87 -2.91 -0.02 2.31 16 29 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.41 1.81 9.06 -74.06 -0.67 1.14 16 32 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -68.68 303.69 2.23 -66.44 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.42 Total: 8.58 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 3.19 Total: -40.44 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.30 Total: -56.08 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.25 Total: -8.61 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.66 kcal Atomic # 16 Polarization: -13.21 SS G_CDS: -2.33 Total: -15.55 kcal Total: -68.68 2.23 -66.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185655607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.280 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds