Wall clock time and date at job start Mon Mar 30 2020 00:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47478 * 2 1 4 4 C 1.52997 * 109.46937 * 120.00534 * 2 1 3 5 5 C 1.50699 * 109.47219 * 185.04583 * 4 2 1 6 6 H 1.08000 * 119.99839 * 5.00248 * 5 4 2 7 7 C 1.37879 * 120.00218 * 185.00352 * 5 4 2 8 8 N 1.31512 * 119.99721 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00066 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46980 * 90.00647 * 9 7 5 11 11 H 1.48501 * 109.47444 * 210.00264 * 9 7 5 12 12 H 1.48501 * 109.47555 * 330.00611 * 9 7 5 13 13 N 1.46904 * 109.47223 * 240.00181 * 2 1 3 14 14 C 1.46847 * 110.99974 * 309.10541 * 13 2 1 15 15 C 1.53030 * 109.52394 * 185.83682 * 14 13 2 16 16 C 1.53114 * 109.28009 * 300.82113 * 15 14 13 17 17 O 1.42907 * 109.52473 * 177.56256 * 16 15 14 18 18 C 1.42892 * 114.00206 * 136.32391 * 17 16 15 19 19 C 1.53001 * 109.47161 * 55.39976 * 18 17 16 20 20 C 1.53007 * 109.47026 * 175.39756 * 18 17 16 21 21 C 1.52995 * 109.47202 * 295.39630 * 18 17 16 22 22 C 1.53119 * 109.16039 * 57.65358 * 16 15 14 23 23 C 1.46845 * 110.99783 * 73.30947 * 13 2 1 24 24 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47197 * 300.00107 * 1 2 3 26 26 H 1.09003 * 109.46600 * 59.99856 * 1 2 3 27 27 H 1.09003 * 109.47024 * 305.04692 * 4 2 1 28 28 H 1.08998 * 109.47735 * 65.04276 * 4 2 1 29 29 H 0.97001 * 120.00048 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46300 * 65.81843 * 14 13 2 31 31 H 1.09002 * 109.46557 * 305.85509 * 14 13 2 32 32 H 1.09007 * 109.50526 * 60.76526 * 15 14 13 33 33 H 1.09004 * 109.50361 * 180.87928 * 15 14 13 34 34 H 1.09000 * 109.52350 * 297.74835 * 16 15 14 35 35 H 1.08995 * 109.47567 * 57.06724 * 19 18 17 36 36 H 1.09007 * 109.46603 * 177.06856 * 19 18 17 37 37 H 1.09003 * 109.46978 * 297.06089 * 19 18 17 38 38 H 1.09002 * 109.46864 * 59.99725 * 20 18 17 39 39 H 1.08996 * 109.46734 * 179.97438 * 20 18 17 40 40 H 1.09003 * 109.46738 * 299.99712 * 20 18 17 41 41 H 1.09001 * 109.47082 * 60.00171 * 21 18 17 42 42 H 1.09001 * 109.47358 * 180.02562 * 21 18 17 43 43 H 1.09002 * 109.47089 * 300.00520 * 21 18 17 44 44 H 1.09004 * 109.49792 * 182.40604 * 22 16 15 45 45 H 1.08996 * 109.50260 * 62.28758 * 22 16 15 46 46 H 1.08994 * 109.46586 * 294.17843 * 23 13 2 47 47 H 1.09004 * 109.45931 * 54.15006 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5417 -0.6141 1.3133 6 1 4.0720 -0.0171 0.5861 7 6 4.2388 -1.2781 2.3003 8 7 3.5931 -2.0055 3.1855 9 14 6.1004 -1.1457 2.3794 10 1 6.4787 0.0081 3.2343 11 1 6.6615 -2.3939 2.9559 12 1 6.6411 -0.9460 1.0108 13 7 2.0197 -0.6925 -1.1995 14 6 1.3799 -2.0060 -1.3469 15 6 2.0167 -2.7564 -2.5188 16 6 1.8415 -1.9359 -3.7996 17 8 2.4837 -2.6049 -4.8869 18 6 1.7154 -2.6263 -6.0915 19 6 1.3401 -1.1955 -6.4826 20 6 2.5413 -3.2613 -7.2120 21 6 0.4421 -3.4450 -5.8697 22 6 2.4741 -0.5555 -3.6026 23 6 1.8239 0.1311 -2.3994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6046 -0.2624 2.1369 28 1 1.7523 -1.7718 1.2051 29 1 4.0835 -2.4730 3.8797 30 1 0.3150 -1.8719 -1.5371 31 1 1.5154 -2.5809 -0.4308 32 1 3.0789 -2.9030 -2.3229 33 1 1.5309 -3.7249 -2.6377 34 1 0.7794 -1.8222 -4.0170 35 1 2.2458 -0.5987 -6.5898 36 1 0.7988 -1.2076 -7.4287 37 1 0.7082 -0.7610 -5.7080 38 1 2.8087 -4.2806 -6.9333 39 1 1.9551 -3.2781 -8.1307 40 1 3.4485 -2.6780 -7.3700 41 1 -0.1464 -2.9927 -5.0715 42 1 -0.1438 -3.4618 -6.7887 43 1 0.7094 -4.4643 -5.5911 44 1 2.3151 0.0484 -4.4960 45 1 3.5434 -0.6674 -3.4238 46 1 0.7570 0.2551 -2.5847 47 1 2.2821 1.1085 -2.2477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411315744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:57 Heat of formation + Delta-G solvation = -62.843717 kcal Electronic energy + Delta-G solvation = -22337.829057 eV Core-core repulsion = 19326.921885 eV Total energy + Delta-G solvation = -3010.907172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.75106 -38.11863 -34.64518 -32.99026 -31.97240 -30.54246 -29.07797 -27.54011 -27.42380 -27.23153 -23.81297 -22.97018 -22.43946 -20.11303 -19.79839 -18.66587 -16.61089 -16.12635 -15.80934 -15.07336 -14.90100 -14.50452 -14.19247 -13.77238 -13.67382 -13.42844 -13.27339 -12.86738 -12.50447 -12.34853 -12.14233 -12.00737 -11.88421 -11.77522 -11.70986 -11.65593 -11.41014 -11.28855 -11.01516 -10.80725 -10.53779 -10.48737 -10.42407 -10.20610 -10.00639 -9.90439 -9.26546 -9.12435 -8.91547 -8.21424 -7.41211 -5.84454 -3.81651 3.42541 3.48751 3.54643 3.68784 4.55838 4.61506 4.69896 4.71516 4.89360 5.08120 5.14207 5.31952 5.36308 5.37452 5.45655 5.52940 5.55610 5.57692 5.66282 5.67464 5.71852 5.80348 5.83326 5.87082 5.90235 5.99320 6.06268 6.10340 6.12041 6.16597 6.19240 6.30793 6.41778 6.53502 6.59252 6.68275 6.76818 7.03396 7.46195 7.57634 7.72397 7.96324 8.07866 8.16747 8.62439 9.23326 9.79683 11.27630 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.004725 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.203526 B = 5924.987605 C = 6461.842573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.509 5.509 14 C 0.061 3.939 15 C -0.116 4.116 16 C 0.091 3.909 17 O -0.369 6.369 18 C 0.105 3.895 19 C -0.178 4.178 20 C -0.137 4.137 21 C -0.177 4.177 22 C -0.131 4.131 23 C 0.057 3.943 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.023 0.977 29 H 0.257 0.743 30 H 0.022 0.978 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.021 0.979 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 -0.079 -18.793 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.232 5.232 14 C -0.067 4.067 15 C -0.154 4.154 16 C 0.034 3.966 17 O -0.289 6.289 18 C 0.066 3.934 19 C -0.236 4.236 20 C -0.194 4.194 21 C -0.234 4.234 22 C -0.169 4.169 23 C -0.072 4.072 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.039 0.961 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.641 -0.348 -18.577 19.732 hybrid contribution -0.141 0.289 0.026 0.322 sum -6.782 -0.060 -18.551 19.752 Atomic orbital electron populations 1.22525 0.99832 1.01323 1.00539 1.21921 0.89976 0.98241 0.92009 0.91379 1.19185 0.96332 0.95552 0.89583 1.21140 0.91774 1.28337 1.11301 0.92337 1.24978 0.97957 0.95803 0.96065 1.69960 1.35192 1.32543 1.16894 0.86651 0.86508 0.77088 0.78083 1.21075 1.21581 1.19879 1.62035 1.57645 1.02214 1.01341 1.22035 0.94352 0.91578 0.98762 1.21756 1.03412 0.97613 0.92612 1.22169 0.95597 0.92248 0.86618 1.88024 1.44187 1.77412 1.19270 1.21466 0.91365 0.94316 0.86262 1.22553 1.02223 0.96996 1.01783 1.21747 1.00108 1.01367 0.96187 1.22441 0.97799 1.01132 1.02057 1.22087 1.02328 0.95315 0.97178 1.22025 0.97252 0.97126 0.90775 0.92788 0.92569 0.94345 0.96761 0.95923 0.93380 0.95960 0.89146 0.90052 0.91970 0.92497 0.91619 0.91984 0.92093 0.91865 0.91539 0.91874 0.92231 0.91897 0.91722 0.92072 0.90265 0.96102 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.39 37.16 0.31 -2.84 16 2 C 0.09 1.76 2.24 -67.71 -0.15 1.61 16 3 H 0.07 1.41 7.92 -51.93 -0.41 1.00 16 4 C 0.03 0.78 4.42 -27.89 -0.12 0.65 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -9.75 4.30 -226.70 -0.97 -10.72 16 14 C 0.06 1.08 4.46 -3.84 -0.02 1.06 16 15 C -0.12 -1.87 5.75 -26.66 -0.15 -2.02 16 16 C 0.09 1.29 1.71 -26.61 -0.05 1.25 16 17 O -0.37 -5.21 9.63 -35.23 -0.34 -5.55 16 18 C 0.11 1.14 1.11 -90.62 -0.10 1.04 16 19 C -0.18 -1.72 7.24 37.16 0.27 -1.45 16 20 C -0.14 -1.27 8.84 37.16 0.33 -0.94 16 21 C -0.18 -1.73 8.45 37.16 0.31 -1.41 16 22 C -0.13 -1.91 5.50 -26.65 -0.15 -2.06 16 23 C 0.06 0.90 5.18 -3.83 -0.02 0.88 16 24 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.58 6.95 -51.93 -0.36 0.22 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.02 0.37 6.57 -51.93 -0.34 0.02 16 31 H 0.09 1.84 6.28 -51.93 -0.33 1.52 16 32 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.75 5.12 -51.93 -0.27 0.49 16 35 H 0.06 0.65 7.76 -51.93 -0.40 0.25 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 6.46 -51.93 -0.34 0.27 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.77 6.33 -51.93 -0.33 0.44 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.02 0.31 6.99 -51.93 -0.36 -0.05 16 47 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -30.18 348.75 -9.01 -39.19 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.73 Total: -1.89 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 0.06 Total: -16.90 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.24 Total: -37.44 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.34 Total: -5.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.18 -9.01 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.656 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds