Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47478 * 2 1 4 4 C 1.52997 * 109.46937 * 120.00534 * 2 1 3 5 5 C 1.50699 * 109.47219 * 185.04583 * 4 2 1 6 6 H 1.08000 * 119.99839 * 5.00248 * 5 4 2 7 7 C 1.37879 * 120.00218 * 185.00352 * 5 4 2 8 8 N 1.31512 * 119.99721 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00066 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46980 * 90.00647 * 9 7 5 11 11 H 1.48501 * 109.47444 * 210.00264 * 9 7 5 12 12 H 1.48501 * 109.47555 * 330.00611 * 9 7 5 13 13 N 1.46904 * 109.47223 * 240.00181 * 2 1 3 14 14 C 1.46847 * 110.99974 * 309.10541 * 13 2 1 15 15 C 1.53030 * 109.52394 * 185.83682 * 14 13 2 16 16 C 1.53114 * 109.28009 * 300.82113 * 15 14 13 17 17 O 1.42907 * 109.52473 * 177.56256 * 16 15 14 18 18 C 1.42892 * 114.00206 * 136.32391 * 17 16 15 19 19 C 1.53001 * 109.47161 * 55.39976 * 18 17 16 20 20 C 1.53007 * 109.47026 * 175.39756 * 18 17 16 21 21 C 1.52995 * 109.47202 * 295.39630 * 18 17 16 22 22 C 1.53119 * 109.16039 * 57.65358 * 16 15 14 23 23 C 1.46845 * 110.99783 * 73.30947 * 13 2 1 24 24 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47197 * 300.00107 * 1 2 3 26 26 H 1.09003 * 109.46600 * 59.99856 * 1 2 3 27 27 H 1.09003 * 109.47024 * 305.04692 * 4 2 1 28 28 H 1.08998 * 109.47735 * 65.04276 * 4 2 1 29 29 H 0.97001 * 120.00048 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46300 * 65.81843 * 14 13 2 31 31 H 1.09002 * 109.46557 * 305.85509 * 14 13 2 32 32 H 1.09007 * 109.50526 * 60.76526 * 15 14 13 33 33 H 1.09004 * 109.50361 * 180.87928 * 15 14 13 34 34 H 1.09000 * 109.52350 * 297.74835 * 16 15 14 35 35 H 1.08995 * 109.47567 * 57.06724 * 19 18 17 36 36 H 1.09007 * 109.46603 * 177.06856 * 19 18 17 37 37 H 1.09003 * 109.46978 * 297.06089 * 19 18 17 38 38 H 1.09002 * 109.46864 * 59.99725 * 20 18 17 39 39 H 1.08996 * 109.46734 * 179.97438 * 20 18 17 40 40 H 1.09003 * 109.46738 * 299.99712 * 20 18 17 41 41 H 1.09001 * 109.47082 * 60.00171 * 21 18 17 42 42 H 1.09001 * 109.47358 * 180.02562 * 21 18 17 43 43 H 1.09002 * 109.47089 * 300.00520 * 21 18 17 44 44 H 1.09004 * 109.49792 * 182.40604 * 22 16 15 45 45 H 1.08996 * 109.50260 * 62.28758 * 22 16 15 46 46 H 1.08994 * 109.46586 * 294.17843 * 23 13 2 47 47 H 1.09004 * 109.45931 * 54.15006 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5417 -0.6141 1.3133 6 1 4.0720 -0.0171 0.5861 7 6 4.2388 -1.2781 2.3003 8 7 3.5931 -2.0055 3.1855 9 14 6.1004 -1.1457 2.3794 10 1 6.4787 0.0081 3.2343 11 1 6.6615 -2.3939 2.9559 12 1 6.6411 -0.9460 1.0108 13 7 2.0197 -0.6925 -1.1995 14 6 1.3799 -2.0060 -1.3469 15 6 2.0167 -2.7564 -2.5188 16 6 1.8415 -1.9359 -3.7996 17 8 2.4837 -2.6049 -4.8869 18 6 1.7154 -2.6263 -6.0915 19 6 1.3401 -1.1955 -6.4826 20 6 2.5413 -3.2613 -7.2120 21 6 0.4421 -3.4450 -5.8697 22 6 2.4741 -0.5555 -3.6026 23 6 1.8239 0.1311 -2.3994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6046 -0.2624 2.1369 28 1 1.7523 -1.7718 1.2051 29 1 4.0835 -2.4730 3.8797 30 1 0.3150 -1.8719 -1.5371 31 1 1.5154 -2.5809 -0.4308 32 1 3.0789 -2.9030 -2.3229 33 1 1.5309 -3.7249 -2.6377 34 1 0.7794 -1.8222 -4.0170 35 1 2.2458 -0.5987 -6.5898 36 1 0.7988 -1.2076 -7.4287 37 1 0.7082 -0.7610 -5.7080 38 1 2.8087 -4.2806 -6.9333 39 1 1.9551 -3.2781 -8.1307 40 1 3.4485 -2.6780 -7.3700 41 1 -0.1464 -2.9927 -5.0715 42 1 -0.1438 -3.4618 -6.7887 43 1 0.7094 -4.4643 -5.5911 44 1 2.3151 0.0484 -4.4960 45 1 3.5434 -0.6674 -3.4238 46 1 0.7570 0.2551 -2.5847 47 1 2.2821 1.1085 -2.2477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411315744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = -80.767436 kcal Electronic energy + Delta-G solvation = -22338.606288 eV Core-core repulsion = 19326.921885 eV Total energy + Delta-G solvation = -3011.684403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90268 -39.36933 -36.03788 -34.62621 -33.49494 -31.84924 -30.57503 -29.08630 -28.26965 -28.17499 -25.43433 -24.58462 -23.86220 -21.41511 -20.80375 -20.13420 -18.34479 -17.54679 -17.13030 -16.52634 -16.24670 -15.86979 -15.65548 -14.98204 -14.89139 -14.57178 -14.38693 -14.30546 -13.88763 -13.61611 -13.38287 -13.21065 -13.12495 -12.90910 -12.76674 -12.70849 -12.62699 -12.61969 -12.53791 -12.45698 -12.31991 -12.00796 -11.80952 -11.55187 -11.43265 -11.13642 -11.05898 -10.91620 -10.47068 -10.30584 -8.86210 -8.08830 -6.12760 1.40803 1.42361 1.53656 2.48079 2.72349 3.11883 3.28721 3.84321 3.86253 3.97693 4.01750 4.12090 4.18776 4.19792 4.32658 4.39095 4.42715 4.54595 4.55570 4.63516 4.67704 4.72171 4.74908 4.82953 4.88156 4.93516 4.94229 4.98320 5.03986 5.08570 5.15000 5.18378 5.23407 5.25263 5.28088 5.37491 5.39206 5.47983 5.52035 5.71953 5.91230 6.34793 6.48698 6.49716 6.57343 7.00418 7.52518 9.03215 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.004725 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.203526 B = 5924.987605 C = 6461.842573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.497 4.497 6 H 0.054 0.946 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.535 5.535 14 C 0.067 3.933 15 C -0.112 4.112 16 C 0.101 3.899 17 O -0.390 6.390 18 C 0.094 3.906 19 C -0.176 4.176 20 C -0.136 4.136 21 C -0.175 4.175 22 C -0.125 4.125 23 C 0.059 3.941 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.066 0.934 27 H -0.010 1.010 28 H -0.002 1.002 29 H 0.258 0.742 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 0.712 -21.237 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.535 4.535 6 H 0.072 0.928 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.259 5.259 14 C -0.060 4.060 15 C -0.150 4.150 16 C 0.044 3.956 17 O -0.310 6.310 18 C 0.055 3.945 19 C -0.233 4.233 20 C -0.193 4.193 21 C -0.232 4.232 22 C -0.163 4.163 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.009 0.991 28 H 0.017 0.983 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.396 0.453 -21.039 22.306 hybrid contribution 0.089 0.012 0.747 0.752 sum -7.307 0.465 -20.292 21.573 Atomic orbital electron populations 1.22380 0.97018 1.01701 1.02039 1.21619 0.92196 0.97078 0.90508 0.91705 1.19046 0.95049 0.94527 0.91474 1.21462 0.93382 1.27812 1.10871 0.92797 1.25796 1.02656 0.95611 0.95844 1.70084 1.36968 1.33533 1.17621 0.85627 0.80942 0.77332 0.78197 1.19967 1.21262 1.19515 1.61893 1.58729 1.03098 1.02221 1.21901 0.95630 0.90777 0.97739 1.21686 1.01321 0.98574 0.93442 1.21969 0.96497 0.91338 0.85806 1.88007 1.45313 1.77450 1.20278 1.21787 0.91798 0.95628 0.85281 1.22526 1.02183 0.95774 1.02817 1.21780 1.00183 1.00658 0.96696 1.22427 0.97396 1.00370 1.03031 1.22040 1.00586 0.96031 0.97615 1.22065 0.98681 0.96606 0.89517 0.92943 0.92387 0.91478 0.99137 0.98345 0.93330 0.93844 0.92834 0.93135 0.90761 0.90678 0.92135 0.89840 0.92261 0.92571 0.89067 0.92421 0.92622 0.89699 0.92489 0.89533 0.92839 0.93946 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.39 71.98 0.60 -5.07 16 2 C 0.09 3.84 2.24 44.91 0.10 3.95 16 3 H 0.06 2.67 7.92 -2.39 -0.02 2.65 16 4 C 0.04 1.91 4.42 29.85 0.13 2.04 16 5 C -0.50 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.05 3.11 7.75 -2.91 -0.02 3.09 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.95 46.61 29.54 68.60 2.03 48.64 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.54 -20.40 4.30 -871.14 -3.74 -24.14 16 14 C 0.07 2.41 4.46 86.32 0.38 2.79 16 15 C -0.11 -3.62 5.75 30.64 0.18 -3.44 16 16 C 0.10 2.72 1.71 30.67 0.05 2.77 16 17 O -0.39 -10.50 9.63 -148.98 -1.44 -11.93 16 18 C 0.09 1.80 1.11 -10.79 -0.01 1.79 16 19 C -0.18 -2.81 7.24 71.98 0.52 -2.29 16 20 C -0.14 -2.23 8.84 71.98 0.64 -1.59 16 21 C -0.17 -2.94 8.45 71.98 0.61 -2.33 16 22 C -0.12 -3.44 5.50 30.65 0.17 -3.27 16 23 C 0.06 1.76 5.18 86.33 0.45 2.21 16 24 H 0.05 1.73 6.44 -2.39 -0.02 1.71 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.83 6.95 -2.39 -0.02 1.81 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.00 -0.10 6.36 -2.39 -0.02 -0.12 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.04 1.36 6.57 -2.39 -0.02 1.34 16 31 H 0.05 2.29 6.28 -2.39 -0.01 2.27 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.15 16 34 H 0.08 1.76 5.12 -2.39 -0.01 1.75 16 35 H 0.06 1.03 7.76 -2.39 -0.02 1.01 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.97 6.30 -2.39 -0.02 0.95 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.97 6.46 -2.39 -0.02 0.96 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.95 6.33 -2.38 -0.02 1.94 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.10 6.99 -2.39 -0.02 1.09 16 47 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 Total: -1.00 -66.47 348.75 2.55 -63.92 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.91 Total: 12.55 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 4.51 Total: -30.75 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.46 Total: -82.42 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.44 Total: -11.93 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -66.47 2.55 -63.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.847 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds