Wall clock time and date at job start Mon Mar 30 2020 01:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47231 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.01996 * 305.06301 * 5 4 3 7 7 C 1.53874 * 110.03233 * 66.45481 * 5 4 3 8 8 C 1.54274 * 106.59746 * 119.28370 * 7 5 4 9 9 C 1.54890 * 104.19504 * 23.61389 * 8 7 5 10 10 C 1.54272 * 110.03464 * 183.61861 * 5 4 3 11 11 H 1.09002 * 110.48535 * 335.79191 * 10 5 4 12 12 N 1.46903 * 110.48241 * 98.42564 * 10 5 4 13 13 C 1.46903 * 110.99802 * 205.00340 * 12 10 5 14 14 C 1.52997 * 109.47090 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47357 * 299.99770 * 14 13 12 16 16 C 1.52999 * 109.47440 * 60.00053 * 14 13 12 17 17 C 1.50697 * 109.47279 * 180.02562 * 14 13 12 18 18 H 1.08004 * 119.99876 * 359.97438 * 17 14 13 19 19 C 1.37883 * 120.00343 * 180.02562 * 17 14 13 20 20 N 1.31510 * 119.99708 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00069 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47490 * 89.99439 * 21 19 17 23 23 H 1.48498 * 109.47007 * 209.99546 * 21 19 17 24 24 H 1.48501 * 109.47055 * 329.99235 * 21 19 17 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 29 29 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 30 30 H 1.09003 * 109.47336 * 300.00218 * 4 3 2 31 31 H 1.09002 * 109.47085 * 59.99939 * 4 3 2 32 32 H 1.08999 * 110.02990 * 238.56846 * 7 5 4 33 33 H 1.08995 * 110.03312 * 359.97438 * 7 5 4 34 34 H 1.09004 * 110.48298 * 142.28543 * 8 7 5 35 35 H 1.08993 * 110.48604 * 264.79687 * 8 7 5 36 36 H 1.08994 * 110.75755 * 80.37110 * 9 8 7 37 37 H 1.08998 * 110.75110 * 203.74055 * 9 8 7 38 38 H 1.00898 * 110.99898 * 328.95304 * 12 10 5 39 39 H 1.09002 * 109.47095 * 300.00312 * 13 12 10 40 40 H 1.08999 * 109.47520 * 59.99966 * 13 12 10 41 41 H 1.09003 * 109.46714 * 59.99945 * 15 14 13 42 42 H 1.08999 * 109.47560 * 180.02562 * 15 14 13 43 43 H 1.09005 * 109.47054 * 300.00608 * 15 14 13 44 44 H 1.08994 * 109.47279 * 59.99925 * 16 14 13 45 45 H 1.08992 * 109.47453 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.46891 * 300.00214 * 16 14 13 47 47 H 0.97006 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3534 3.4509 -0.8371 7 6 3.4027 3.5962 1.3265 8 6 4.6946 4.1106 1.9947 9 6 5.6863 4.2876 0.8182 10 6 5.3592 3.0761 -0.0897 11 1 5.8459 2.1758 0.2854 12 7 5.7700 3.3454 -1.4741 13 6 7.1520 2.9055 -1.7081 14 6 7.5432 3.2024 -3.1571 15 6 6.6026 2.4533 -4.1031 16 6 7.4359 4.7064 -3.4166 17 6 8.9607 2.7506 -3.3974 18 1 9.5261 2.2975 -2.5965 19 6 9.5361 2.9167 -4.6394 20 7 8.8478 3.4689 -5.6144 21 14 11.2934 2.3574 -4.9369 22 1 11.2921 0.9467 -5.4008 23 1 11.9183 3.2186 -5.9728 24 1 12.0669 2.4623 -3.6736 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9765 -0.8892 32 1 2.7264 4.4284 1.1313 33 1 2.9162 2.8624 1.9691 34 1 4.5144 5.0655 2.4886 35 1 5.0726 3.3784 2.7082 36 1 5.5002 5.2248 0.2937 37 1 6.7165 4.2390 1.1708 38 1 5.1369 2.9126 -2.1298 39 1 7.8222 3.4395 -1.0345 40 1 7.2287 1.8341 -1.5229 41 1 5.5772 2.7796 -3.9295 42 1 6.8816 2.6644 -5.1355 43 1 6.6791 1.3817 -3.9183 44 1 8.1060 5.2401 -2.7427 45 1 7.7142 4.9178 -4.4490 46 1 6.4105 5.0327 -3.2429 47 1 9.2525 3.5855 -6.4883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459728811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:50 Heat of formation + Delta-G solvation = -73.412922 kcal Electronic energy + Delta-G solvation = -21702.361071 eV Core-core repulsion = 18690.995585 eV Total energy + Delta-G solvation = -3011.365487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16863 -37.52907 -36.14243 -33.01958 -31.85497 -30.67083 -29.51434 -26.90380 -25.53924 -25.19806 -24.49577 -23.04588 -22.93052 -20.21876 -19.65965 -18.32406 -16.71997 -16.32891 -15.89440 -15.48596 -15.20680 -14.62878 -14.30173 -13.98296 -13.65063 -13.51851 -13.06496 -12.70529 -12.58569 -12.39493 -12.02691 -11.77371 -11.47874 -11.37239 -11.12967 -10.99232 -10.91884 -10.79175 -10.73287 -10.68552 -10.57762 -10.35374 -10.30549 -10.13370 -10.02528 -9.64836 -9.35569 -9.01266 -8.59523 -8.27175 -7.67261 -5.89290 -3.99628 3.31937 3.39092 3.42108 3.55075 4.44752 4.64263 4.72629 4.82012 4.86370 5.02862 5.09980 5.19303 5.31073 5.36056 5.38998 5.40447 5.51716 5.65257 5.68201 5.71763 5.78315 5.88094 5.91220 6.06043 6.10447 6.18062 6.32804 6.37168 6.39410 6.48297 6.60214 6.75249 6.92423 7.11128 7.14108 7.19816 7.42195 7.51408 7.78035 7.79217 7.87384 8.02099 8.24075 8.37663 8.58400 9.01916 9.65224 11.11135 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.004087 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.236059 B = 6849.393589 C = 7571.704647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.387 6.387 4 C 0.068 3.932 5 C -0.093 4.093 6 H 0.088 0.912 7 C -0.109 4.109 8 C -0.127 4.127 9 C -0.109 4.109 10 C 0.088 3.912 11 H 0.044 0.956 12 N -0.679 5.679 13 C 0.076 3.924 14 C 0.069 3.931 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.888 3.112 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.337 0.663 39 H 0.056 0.944 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.083 0.917 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.020 0.980 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 -3.607 12.286 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.306 6.306 4 C -0.008 4.008 5 C -0.112 4.112 6 H 0.107 0.893 7 C -0.147 4.147 8 C -0.165 4.165 9 C -0.147 4.147 10 C -0.022 4.022 11 H 0.061 0.939 12 N -0.311 5.311 13 C -0.052 4.052 14 C 0.068 3.932 15 C -0.190 4.190 16 C -0.176 4.176 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.716 3.284 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.101 0.899 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.829 -2.752 12.208 17.922 hybrid contribution 1.133 -1.678 -0.231 2.037 sum -11.697 -4.430 11.977 17.317 Atomic orbital electron populations 1.21732 0.93882 1.02039 1.03081 1.22433 0.95478 0.84216 0.99964 1.87882 1.21391 1.25968 1.95396 1.22648 0.80875 0.97363 0.99918 1.21958 0.95952 0.93669 0.99613 0.89349 1.22041 0.97266 0.99889 0.95460 1.22379 0.95782 1.00555 0.97760 1.22470 0.98280 0.99099 0.94866 1.22335 0.92075 0.96617 0.91183 0.93859 1.60720 1.04997 1.63597 1.01751 1.22182 0.87045 0.95524 1.00462 1.18088 0.93975 0.93329 0.87803 1.21831 0.95421 0.97205 1.04499 1.21627 0.96842 0.96792 1.02342 1.21119 0.97641 1.39464 0.96302 0.93072 1.24885 0.97359 0.95128 0.96208 1.69837 1.36177 1.43953 1.02354 0.86669 0.85384 0.78450 0.77883 1.20908 1.21303 1.20078 0.91303 0.91807 0.91978 0.93712 0.93452 0.93525 0.93439 0.91799 0.91920 0.91873 0.92196 0.90355 0.91995 0.84331 0.92578 0.97099 0.97052 0.89854 0.96353 0.96339 0.90814 0.96076 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.56 6.66 37.16 0.25 0.81 16 3 O -0.39 -4.94 10.10 -35.23 -0.36 -5.30 16 4 C 0.07 0.86 4.95 37.16 0.18 1.04 16 5 C -0.09 -1.23 2.66 -89.50 -0.24 -1.46 16 6 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 7 C -0.11 -1.27 6.30 -25.61 -0.16 -1.44 16 8 C -0.13 -1.44 6.83 -25.07 -0.17 -1.61 16 9 C -0.11 -1.51 6.57 -24.74 -0.16 -1.67 16 10 C 0.09 1.31 2.72 -66.05 -0.18 1.13 16 11 H 0.04 0.66 7.54 -51.93 -0.39 0.27 16 12 N -0.68 -12.12 5.54 -104.97 -0.58 -12.70 16 13 C 0.08 1.60 4.45 -3.82 -0.02 1.58 16 14 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 15 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 16 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 17 C -0.51 -13.72 8.01 -34.44 -0.28 -13.99 16 18 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 19 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.62 9.35 55.43 0.52 -24.10 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.71 7.61 -51.93 -0.39 0.32 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.34 6.03 6.37 -39.29 -0.25 5.78 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 41 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 42 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 46 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 47 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -27.50 359.04 -9.12 -36.62 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -9.12 Total: 2.53 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 0.02 Total: -18.66 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.06 Total: -36.80 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.36 Total: -5.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.50 -9.12 -36.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459728811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.792 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds