Wall clock time and date at job start Mon Mar 30 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34997 * 116.99621 * 2 1 4 4 O 1.21731 * 120.00661 * 359.97438 * 3 2 1 5 5 C 1.41261 * 119.99677 * 179.97438 * 3 2 1 6 6 S 1.75814 * 125.48974 * 0.13474 * 5 3 2 7 7 C 1.70561 * 91.69688 * 180.18744 * 6 5 3 8 8 C 1.33536 * 111.23642 * 359.82514 * 7 6 5 9 9 C 1.37630 * 125.49032 * 179.97438 * 5 3 2 10 10 N 1.39161 * 123.52333 * 0.02697 * 9 5 3 11 11 N 1.40104 * 119.99661 * 179.72252 * 10 9 5 12 12 C 1.34772 * 119.99623 * 179.72293 * 11 10 9 13 13 O 1.21695 * 120.00176 * 0.28067 * 12 11 10 14 14 C 1.46375 * 120.00131 * 180.27859 * 12 11 10 15 15 H 1.08005 * 119.99733 * 353.94178 * 14 12 11 16 16 C 1.40042 * 120.00170 * 173.94085 * 14 12 11 17 17 N 1.30669 * 120.00455 * 6.15206 * 16 14 12 18 18 Si 1.86803 * 119.99867 * 186.14923 * 16 14 12 19 19 H 1.48498 * 109.47177 * 94.98772 * 18 16 14 20 20 H 1.48502 * 109.47127 * 214.98238 * 18 16 14 21 21 H 1.48493 * 109.47253 * 334.98410 * 18 16 14 22 22 H 1.08994 * 109.46954 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47317 * 300.00475 * 1 2 3 24 24 H 1.09000 * 109.46606 * 59.99897 * 1 2 3 25 25 H 1.08001 * 124.37642 * 179.84215 * 7 6 5 26 26 H 1.08007 * 122.45076 * 180.02562 * 8 7 6 27 27 H 0.97002 * 119.99880 * 359.72588 * 10 9 5 28 28 H 0.96992 * 119.99878 * 0.02562 * 11 10 9 29 29 H 0.97000 * 120.00488 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2029 0.0000 4 8 1.3789 2.2238 -0.0005 5 6 3.4525 1.2768 0.0005 6 16 4.5468 -0.0993 -0.0021 7 6 5.9126 0.9222 0.0060 8 6 5.5545 2.2087 0.0066 9 6 4.1918 2.4377 0.0001 10 7 3.6261 3.7091 -0.0004 11 7 4.4499 4.8424 0.0050 12 6 3.9020 6.0737 -0.0011 13 8 2.6918 6.2012 -0.0062 14 6 4.7627 7.2577 -0.0016 15 1 5.8322 7.1479 0.1017 16 6 4.1994 8.5328 -0.1360 17 7 2.9006 8.6763 -0.1400 18 14 5.3048 10.0286 -0.3093 19 1 5.4873 10.3452 -1.7486 20 1 4.6801 11.1879 0.3771 21 1 6.6256 9.7421 0.3059 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 6.9348 0.5736 0.0099 26 1 6.2771 3.0114 0.0110 27 1 2.6614 3.8107 -0.0045 28 1 5.4145 4.7407 0.0088 29 1 2.5104 9.5594 -0.2335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000082258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:20 Heat of formation + Delta-G solvation = -53.482749 kcal Electronic energy + Delta-G solvation = -17862.807223 eV Core-core repulsion = 14686.300555 eV Total energy + Delta-G solvation = -3176.506668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27864 -38.78111 -37.15840 -36.01386 -34.12507 -32.62063 -30.90536 -29.26927 -27.19033 -25.99879 -24.21308 -21.99527 -20.51909 -19.36517 -18.70631 -17.62920 -16.71122 -16.25654 -16.19697 -15.51457 -15.37119 -14.81775 -14.08305 -14.03832 -13.58006 -13.25028 -13.09301 -12.77396 -12.51197 -12.22014 -11.80499 -11.42781 -11.25890 -10.85768 -10.76895 -10.69966 -10.52299 -10.41040 -10.17366 -9.06863 -8.76848 -8.37246 -8.01840 -6.59723 -6.44095 -4.89592 0.70940 1.77178 2.09531 2.52866 2.98187 3.03646 3.12608 3.15534 3.20876 3.36324 4.00339 4.35452 4.74909 5.23383 5.28955 5.33150 5.34604 5.42652 5.52101 5.67806 5.95450 6.13375 6.16862 6.67458 7.18067 7.22866 7.80886 8.03559 8.15503 8.48588 8.76699 9.07912 10.29792 10.48864 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.004709 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.041630 B = 5944.567455 C = 6930.470777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.547 3.453 4 O -0.530 6.530 5 C -0.405 4.405 6 S 0.199 5.801 7 C -0.176 4.176 8 C -0.195 4.195 9 C 0.297 3.703 10 N -0.467 5.467 11 N -0.565 5.565 12 C 0.550 3.450 13 O -0.568 6.568 14 C -0.532 4.532 15 H 0.077 0.923 16 C 0.086 3.914 17 N -0.759 5.759 18 Si 0.919 3.081 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.171 0.829 26 H 0.146 0.854 27 H 0.448 0.552 28 H 0.404 0.596 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -15.678 -0.020 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.397 3.603 4 O -0.422 6.422 5 C -0.531 4.531 6 S 0.459 5.541 7 C -0.315 4.315 8 C -0.233 4.233 9 C 0.167 3.833 10 N -0.185 5.185 11 N -0.317 5.317 12 C 0.356 3.644 13 O -0.448 6.448 14 C -0.570 4.570 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.387 5.387 18 Si 0.743 3.257 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.188 0.812 26 H 0.163 0.837 27 H 0.298 0.702 28 H 0.243 0.757 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.744 -16.402 -0.031 16.824 hybrid contribution 0.726 2.326 -0.095 2.438 sum 4.470 -14.076 -0.126 14.769 Atomic orbital electron populations 1.22784 0.77456 1.02934 1.02405 1.86152 1.22795 1.33045 1.85686 1.18082 0.87170 0.81435 0.73587 1.90832 1.66203 1.35277 1.49895 1.20814 0.94106 0.96173 1.41963 1.82804 0.91965 1.06164 1.73131 1.25093 1.05132 0.97931 1.03366 1.19488 0.93789 0.97866 1.12169 1.17145 0.91722 0.83727 0.90754 1.44094 1.08520 0.95628 1.70265 1.46207 1.05184 0.96880 1.83451 1.18751 0.89130 0.79290 0.77239 1.90675 1.14926 1.84256 1.54938 1.20643 0.93812 0.88354 1.54186 0.90530 1.25739 0.95221 0.99994 0.92597 1.70013 1.11065 1.24297 1.33294 0.86161 0.80418 0.80080 0.79013 1.19566 1.20223 1.18635 0.88551 0.92376 0.92371 0.81198 0.83659 0.70247 0.75733 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.45 101.05 1.06 1.53 15 2 O -0.36 -5.55 10.22 -41.31 -0.42 -5.97 15 3 C 0.55 10.08 7.71 31.88 0.25 10.33 15 4 O -0.53 -11.53 14.24 -19.44 -0.28 -11.80 15 5 C -0.40 -6.90 6.28 -38.66 -0.24 -7.14 15 6 S 0.20 2.43 22.81 -107.50 -2.45 -0.03 15 7 C -0.18 -1.96 10.89 29.09 0.32 -1.65 15 8 C -0.20 -2.75 9.56 -41.25 -0.39 -3.14 15 9 C 0.30 5.34 6.77 -84.78 -0.57 4.76 15 10 N -0.47 -10.24 6.38 31.92 0.20 -10.03 15 11 N -0.57 -12.76 6.25 30.19 0.19 -12.57 15 12 C 0.55 15.39 7.86 -12.99 -0.10 15.29 15 13 O -0.57 -18.39 14.88 5.19 0.08 -18.32 15 14 C -0.53 -14.26 9.53 -35.63 -0.34 -14.60 15 15 H 0.08 1.82 7.85 -52.48 -0.41 1.41 15 16 C 0.09 2.30 5.49 -17.37 -0.10 2.20 15 17 N -0.76 -22.09 11.85 55.55 0.66 -21.43 15 18 Si 0.92 19.18 29.56 -169.99 -5.03 14.15 15 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 15 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 22 H 0.10 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 15 24 H 0.06 0.72 8.13 -51.93 -0.42 0.30 15 25 H 0.17 1.26 8.06 -52.49 -0.42 0.83 15 26 H 0.15 1.80 6.74 -52.48 -0.35 1.45 15 27 H 0.45 11.08 5.51 -182.59 -1.01 10.08 15 28 H 0.40 7.55 7.00 -182.60 -1.28 6.27 15 29 H 0.27 7.18 8.29 -40.82 -0.34 6.84 15 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -34.75 279.94 -6.83 -41.58 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.87 Total: 12.61 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.13 Total: 7.59 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 1.05 Total: -44.04 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.62 Total: -36.09 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.45 Total: -0.03 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.75 -6.83 -41.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000082258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.900 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds