Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34997 * 116.99621 * 2 1 4 4 O 1.21731 * 120.00661 * 359.97438 * 3 2 1 5 5 C 1.41261 * 119.99677 * 179.97438 * 3 2 1 6 6 S 1.75814 * 125.48974 * 0.13474 * 5 3 2 7 7 C 1.70561 * 91.69688 * 180.18744 * 6 5 3 8 8 C 1.33536 * 111.23642 * 359.82514 * 7 6 5 9 9 C 1.37630 * 125.49032 * 179.97438 * 5 3 2 10 10 N 1.39161 * 123.52333 * 0.02697 * 9 5 3 11 11 N 1.40104 * 119.99661 * 179.72252 * 10 9 5 12 12 C 1.34772 * 119.99623 * 179.72293 * 11 10 9 13 13 O 1.21695 * 120.00176 * 0.28067 * 12 11 10 14 14 C 1.46375 * 120.00131 * 180.27859 * 12 11 10 15 15 H 1.08005 * 119.99733 * 353.94178 * 14 12 11 16 16 C 1.40042 * 120.00170 * 173.94085 * 14 12 11 17 17 N 1.30669 * 120.00455 * 6.15206 * 16 14 12 18 18 Si 1.86803 * 119.99867 * 186.14923 * 16 14 12 19 19 H 1.48498 * 109.47177 * 94.98772 * 18 16 14 20 20 H 1.48502 * 109.47127 * 214.98238 * 18 16 14 21 21 H 1.48493 * 109.47253 * 334.98410 * 18 16 14 22 22 H 1.08994 * 109.46954 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47317 * 300.00475 * 1 2 3 24 24 H 1.09000 * 109.46606 * 59.99897 * 1 2 3 25 25 H 1.08001 * 124.37642 * 179.84215 * 7 6 5 26 26 H 1.08007 * 122.45076 * 180.02562 * 8 7 6 27 27 H 0.97002 * 119.99880 * 359.72588 * 10 9 5 28 28 H 0.96992 * 119.99878 * 0.02562 * 11 10 9 29 29 H 0.97000 * 120.00488 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2029 0.0000 4 8 1.3789 2.2238 -0.0005 5 6 3.4525 1.2768 0.0005 6 16 4.5468 -0.0993 -0.0021 7 6 5.9126 0.9222 0.0060 8 6 5.5545 2.2087 0.0066 9 6 4.1918 2.4377 0.0001 10 7 3.6261 3.7091 -0.0004 11 7 4.4499 4.8424 0.0050 12 6 3.9020 6.0737 -0.0011 13 8 2.6918 6.2012 -0.0062 14 6 4.7627 7.2577 -0.0016 15 1 5.8322 7.1479 0.1017 16 6 4.1994 8.5328 -0.1360 17 7 2.9006 8.6763 -0.1400 18 14 5.3048 10.0286 -0.3093 19 1 5.4873 10.3452 -1.7486 20 1 4.6801 11.1879 0.3771 21 1 6.6256 9.7421 0.3059 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 6.9348 0.5736 0.0099 26 1 6.2771 3.0114 0.0110 27 1 2.6614 3.8107 -0.0045 28 1 5.4145 4.7407 0.0088 29 1 2.5104 9.5594 -0.2335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000082258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -79.840476 kcal Electronic energy + Delta-G solvation = -17863.950179 eV Core-core repulsion = 14686.300555 eV Total energy + Delta-G solvation = -3177.649625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65546 -40.27937 -38.92296 -37.41013 -35.81952 -34.67091 -32.35597 -30.80026 -28.60406 -27.70105 -25.42870 -23.38689 -22.31708 -20.78770 -20.01434 -19.31600 -18.22649 -18.02122 -17.51136 -17.16648 -16.71459 -16.15836 -15.63887 -15.55594 -14.86120 -14.71056 -14.67726 -14.45390 -13.98730 -13.43886 -13.22115 -12.91648 -12.87535 -12.74392 -12.35336 -12.02375 -11.91782 -11.77694 -11.60448 -11.00963 -10.18767 -10.13957 -9.69390 -8.43207 -8.13218 -6.97596 -0.48303 0.59073 0.96914 1.28698 1.38298 1.42140 1.52368 1.62416 1.93639 2.00639 2.25721 2.36125 3.45593 3.53492 4.08109 4.09849 4.29795 4.33144 4.35946 4.66647 4.87322 4.96065 4.97912 5.23412 5.31792 5.43812 5.91978 6.26695 6.68977 6.74681 6.78259 7.24210 8.28523 8.53184 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.004709 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.041630 B = 5944.567455 C = 6930.470777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.574 6.574 5 C -0.437 4.437 6 S 0.279 5.721 7 C -0.143 4.143 8 C -0.226 4.226 9 C 0.281 3.719 10 N -0.502 5.502 11 N -0.551 5.551 12 C 0.534 3.466 13 O -0.628 6.628 14 C -0.553 4.553 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.819 5.819 18 Si 1.011 2.989 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.240 1.240 22 H 0.142 0.858 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.222 0.778 26 H 0.159 0.841 27 H 0.430 0.570 28 H 0.422 0.578 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 -17.635 -0.092 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.393 3.607 4 O -0.469 6.469 5 C -0.561 4.561 6 S 0.541 5.459 7 C -0.282 4.282 8 C -0.262 4.262 9 C 0.154 3.846 10 N -0.222 5.222 11 N -0.303 5.303 12 C 0.340 3.660 13 O -0.513 6.513 14 C -0.591 4.591 15 H 0.124 0.876 16 C -0.190 4.190 17 N -0.447 5.447 18 Si 0.829 3.171 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.163 1.163 22 H 0.160 0.840 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.238 0.762 26 H 0.177 0.823 27 H 0.275 0.725 28 H 0.264 0.736 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.126 -18.507 -0.098 19.832 hybrid contribution -0.326 2.545 -0.063 2.566 sum 6.800 -15.962 -0.161 17.351 Atomic orbital electron populations 1.23127 0.75726 1.05696 1.01799 1.86140 1.24497 1.31278 1.85046 1.18517 0.87990 0.81572 0.72655 1.90820 1.67415 1.36878 1.51824 1.21379 0.94694 0.98673 1.41377 1.82562 0.89995 1.02923 1.70439 1.25704 1.07271 0.96430 0.98765 1.19604 0.92078 0.99777 1.14772 1.17742 0.93683 0.82334 0.90835 1.44030 1.07505 0.96383 1.74247 1.45468 1.05857 0.96613 1.82342 1.19173 0.88630 0.81248 0.76984 1.90620 1.17325 1.85719 1.57660 1.21253 0.95139 0.88641 1.54023 0.87626 1.27138 0.96783 1.03939 0.91118 1.70199 1.14032 1.25583 1.34911 0.84804 0.78429 0.74499 0.79330 1.18711 1.19934 1.16272 0.83961 0.93060 0.93064 0.76170 0.82317 0.72482 0.73624 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.45 113.37 1.18 1.91 15 2 O -0.35 -10.67 10.22 -59.16 -0.60 -11.27 15 3 C 0.54 20.41 7.71 68.56 0.53 20.94 15 4 O -0.57 -26.65 14.24 19.08 0.27 -26.37 15 5 C -0.44 -14.70 6.28 22.87 0.14 -14.56 15 6 S 0.28 5.78 22.81 -56.49 -1.29 4.49 15 7 C -0.14 -2.51 10.89 66.75 0.73 -1.78 15 8 C -0.23 -5.85 9.56 21.19 0.20 -5.65 15 9 C 0.28 10.14 6.77 37.82 0.26 10.40 15 10 N -0.50 -23.22 6.38 -52.91 -0.34 -23.55 15 11 N -0.55 -25.90 6.25 -176.62 -1.10 -27.00 15 12 C 0.53 31.32 7.86 86.36 0.68 32.00 15 13 O -0.63 -43.50 14.88 -4.33 -0.06 -43.57 15 14 C -0.55 -30.17 9.53 24.83 0.24 -29.94 15 15 H 0.11 4.92 7.85 -2.91 -0.02 4.90 15 16 C 0.03 1.42 5.49 85.30 0.47 1.89 15 17 N -0.82 -49.71 11.85 21.83 0.26 -49.46 15 18 Si 1.01 39.16 29.56 68.60 2.03 41.18 15 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 21 H -0.24 -8.34 7.11 99.48 0.71 -7.64 15 22 H 0.14 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.05 1.30 8.13 -2.39 -0.02 1.28 15 24 H 0.05 1.30 8.13 -2.39 -0.02 1.28 15 25 H 0.22 1.68 8.06 -2.91 -0.02 1.66 15 26 H 0.16 3.59 6.74 -2.91 -0.02 3.57 15 27 H 0.43 23.05 5.51 -213.31 -1.18 21.88 15 28 H 0.42 15.95 7.00 -213.33 -1.49 14.45 15 29 H 0.28 15.26 8.29 -92.71 -0.77 14.49 15 Total: -1.00 -83.31 279.94 2.14 -81.17 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -1.44 Total: 39.18 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 4.43 Total: 15.21 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -1.18 Total: -100.01 kcal Atomic # 8 Polarization: -80.81 SS G_CDS: -0.40 Total: -81.21 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.29 Total: 4.49 kcal Total: -83.31 2.14 -81.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000082258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.327 kcal (2) G-P(sol) polarization free energy of solvation -83.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds