Wall clock time and date at job start Mon Mar 30 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 119.99556 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00122 * 3 2 1 5 5 H 1.48500 * 109.46902 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.46871 * 150.00080 * 3 2 1 7 7 C 1.40111 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.46240 * 120.00368 * 0.02562 * 7 2 1 10 10 O 1.21665 * 120.00081 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00027 * 180.02562 * 9 7 2 12 12 C 1.34779 * 120.00026 * 179.97438 * 11 9 7 13 13 O 1.21565 * 120.00020 * 359.97438 * 12 11 9 14 14 N 1.34773 * 120.00150 * 180.27490 * 12 11 9 15 15 C 1.40165 * 120.00193 * 175.26641 * 14 12 11 16 16 C 1.38787 * 120.05095 * 34.64166 * 15 14 12 17 17 C 1.38148 * 119.98005 * 179.74469 * 16 15 14 18 18 C 1.38478 * 120.08484 * 0.55756 * 17 16 15 19 19 F 1.35093 * 119.94858 * 179.72031 * 18 17 16 20 20 C 1.38462 * 120.10338 * 359.69802 * 18 17 16 21 21 C 1.38303 * 120.02304 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.04782 * 179.97438 * 21 20 18 23 23 H 0.96997 * 120.00316 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00619 * 359.97438 * 11 9 7 25 25 H 0.96998 * 120.00202 * 355.26902 * 14 12 11 26 26 H 1.08011 * 120.01181 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.95598 * 180.25308 * 17 16 15 28 28 H 1.07995 * 119.98882 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7001 6 1 3.5379 1.4403 0.7000 7 6 2.0070 -1.2134 -0.0005 8 1 3.0871 -1.2134 -0.0001 9 6 1.2759 -2.4799 -0.0017 10 8 0.0593 -2.4800 -0.0017 11 7 1.9499 -3.6470 -0.0017 12 6 1.2761 -4.8143 -0.0022 13 8 0.0605 -4.8144 -0.0022 14 7 1.9500 -5.9814 0.0034 15 6 1.2524 -7.1931 0.1030 16 6 0.0061 -7.3285 -0.4924 17 6 -0.6778 -8.5251 -0.3978 18 6 -0.1266 -9.5863 0.3004 19 9 -0.8003 -10.7534 0.3960 20 6 1.1142 -9.4534 0.9003 21 6 1.8052 -8.2593 0.8035 22 9 3.0157 -8.1289 1.3891 23 1 -0.4850 0.8400 0.0004 24 1 2.9199 -3.6471 -0.0013 25 1 2.9178 -5.9830 -0.0615 26 1 -0.4273 -6.4998 -1.0328 27 1 -1.6458 -8.6313 -0.8648 28 1 1.5425 -10.2824 1.4441 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000171230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:58 Heat of formation + Delta-G solvation = -124.307031 kcal Electronic energy + Delta-G solvation = -19604.215237 eV Core-core repulsion = 15870.797011 eV Total energy + Delta-G solvation = -3733.418226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.06448 -49.00620 -40.42865 -38.63036 -36.56142 -34.31504 -33.22951 -32.48255 -30.88223 -29.02219 -26.71938 -23.75489 -23.04734 -21.61600 -19.77283 -18.61693 -18.33215 -17.81968 -16.87141 -16.48141 -16.03589 -15.71352 -15.49148 -15.36885 -14.95274 -14.59420 -14.29095 -14.05976 -13.83897 -13.11397 -12.65619 -12.52943 -12.36043 -11.93503 -11.62285 -11.43769 -11.13666 -10.77467 -10.41064 -10.20453 -9.75904 -9.12050 -9.07286 -8.64541 -8.02805 -7.76738 -6.41513 -4.93002 0.87223 0.97951 2.86384 3.01735 3.11402 3.14739 3.20045 3.56104 3.80739 3.96845 4.28262 4.45738 4.55367 4.73592 4.82513 5.10534 5.41777 5.58325 5.68624 5.81429 6.06123 6.16800 6.39068 6.81674 6.87326 7.20381 7.31160 7.82778 7.99172 8.59591 8.77994 9.25136 10.28900 10.48287 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.045480 B = 0.003928 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.503111 B = 7127.056018 C = 7646.713898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.084 3.916 3 Si 0.918 3.082 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.536 3.464 10 O -0.513 6.513 11 N -0.688 5.688 12 C 0.689 3.311 13 O -0.526 6.526 14 N -0.690 5.690 15 C 0.141 3.859 16 C -0.068 4.068 17 C -0.139 4.139 18 C 0.100 3.900 19 F -0.137 7.137 20 C -0.172 4.172 21 C 0.091 3.909 22 F -0.131 7.131 23 H 0.275 0.725 24 H 0.392 0.608 25 H 0.407 0.593 26 H 0.165 0.835 27 H 0.145 0.855 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -14.409 -0.557 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.342 3.658 10 O -0.388 6.388 11 N -0.353 5.353 12 C 0.390 3.610 13 O -0.398 6.398 14 N -0.341 5.341 15 C 0.043 3.957 16 C -0.088 4.088 17 C -0.159 4.159 18 C 0.080 3.920 19 F -0.115 7.115 20 C -0.193 4.193 21 C 0.069 3.931 22 F -0.110 7.110 23 H 0.086 0.914 24 H 0.225 0.775 25 H 0.243 0.757 26 H 0.183 0.817 27 H 0.163 0.837 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.038 -14.154 -0.517 14.728 hybrid contribution 1.722 0.499 0.197 1.804 sum 5.760 -13.655 -0.320 14.824 Atomic orbital electron populations 1.69986 1.07221 1.28150 1.33093 1.25776 0.94775 1.00664 0.92595 0.86198 0.80010 0.80580 0.79032 1.19499 1.20216 1.18695 1.20826 0.93828 0.88365 1.54082 0.90632 1.18566 0.87810 0.81153 0.78312 1.90757 1.13199 1.84793 1.50071 1.44977 1.11148 1.05758 1.73447 1.16515 0.86114 0.80153 0.78220 1.90980 1.10899 1.85280 1.52635 1.42971 1.10250 1.03239 1.77612 1.17605 0.94729 0.85214 0.98114 1.21297 0.92862 0.97591 0.97099 1.21164 1.01804 0.91851 1.01068 1.17244 0.91151 0.82576 1.01048 1.91501 1.79490 1.45828 1.94694 1.20750 0.95325 0.98128 1.05056 1.17039 0.83492 0.94668 0.97935 1.91497 1.41163 1.96343 1.81978 0.91449 0.77532 0.75739 0.81750 0.83747 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.84 11.83 55.55 0.66 -21.19 15 2 C 0.08 2.21 5.50 -17.35 -0.10 2.11 15 3 Si 0.92 18.90 29.56 -169.99 -5.02 13.88 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.78 15 7 C -0.54 -14.08 9.54 -35.67 -0.34 -14.42 15 8 H 0.08 1.74 7.85 -52.48 -0.41 1.33 15 9 C 0.54 14.76 7.68 -13.05 -0.10 14.66 15 10 O -0.51 -16.68 13.42 -18.58 -0.25 -16.93 15 11 N -0.69 -14.62 5.24 -17.10 -0.09 -14.71 15 12 C 0.69 14.34 8.35 -86.92 -0.73 13.62 15 13 O -0.53 -13.36 12.15 -18.50 -0.22 -13.58 15 14 N -0.69 -10.58 5.24 -14.15 -0.07 -10.65 15 15 C 0.14 2.09 6.32 -83.55 -0.53 1.56 15 16 C -0.07 -1.01 8.70 -39.41 -0.34 -1.36 15 17 C -0.14 -1.73 10.02 -39.53 -0.40 -2.12 15 18 C 0.10 1.20 7.30 -39.41 -0.29 0.91 15 19 F -0.14 -1.62 17.26 2.25 0.04 -1.58 15 20 C -0.17 -1.97 10.00 -39.48 -0.39 -2.36 15 21 C 0.09 1.17 7.31 -39.26 -0.29 0.89 15 22 F -0.13 -1.65 16.96 2.25 0.04 -1.61 15 23 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 24 H 0.39 6.42 8.69 -40.82 -0.35 6.06 15 25 H 0.41 4.78 8.68 -40.82 -0.35 4.43 15 26 H 0.17 2.82 6.19 -52.48 -0.32 2.50 15 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.15 1.35 8.06 -52.49 -0.42 0.92 15 LS Contribution 269.50 15.07 4.06 4.06 Total: -1.00 -34.96 269.50 -5.79 -40.75 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -1.43 Total: 8.07 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -3.50 Total: 13.49 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.49 Total: -46.55 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.47 Total: -30.51 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.96 -5.79 -40.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.557 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds