Wall clock time and date at job start Mon Mar 30 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 119.99556 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00122 * 3 2 1 5 5 H 1.48500 * 109.46902 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.46871 * 150.00080 * 3 2 1 7 7 C 1.40111 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.46240 * 120.00368 * 0.02562 * 7 2 1 10 10 O 1.21665 * 120.00081 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00027 * 180.02562 * 9 7 2 12 12 C 1.34779 * 120.00026 * 179.97438 * 11 9 7 13 13 O 1.21565 * 120.00020 * 359.97438 * 12 11 9 14 14 N 1.34773 * 120.00150 * 180.27490 * 12 11 9 15 15 C 1.40165 * 120.00193 * 175.26641 * 14 12 11 16 16 C 1.38787 * 120.05095 * 34.64166 * 15 14 12 17 17 C 1.38148 * 119.98005 * 179.74469 * 16 15 14 18 18 C 1.38478 * 120.08484 * 0.55756 * 17 16 15 19 19 F 1.35093 * 119.94858 * 179.72031 * 18 17 16 20 20 C 1.38462 * 120.10338 * 359.69802 * 18 17 16 21 21 C 1.38303 * 120.02304 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.04782 * 179.97438 * 21 20 18 23 23 H 0.96997 * 120.00316 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00619 * 359.97438 * 11 9 7 25 25 H 0.96998 * 120.00202 * 355.26902 * 14 12 11 26 26 H 1.08011 * 120.01181 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.95598 * 180.25308 * 17 16 15 28 28 H 1.07995 * 119.98882 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7001 6 1 3.5379 1.4403 0.7000 7 6 2.0070 -1.2134 -0.0005 8 1 3.0871 -1.2134 -0.0001 9 6 1.2759 -2.4799 -0.0017 10 8 0.0593 -2.4800 -0.0017 11 7 1.9499 -3.6470 -0.0017 12 6 1.2761 -4.8143 -0.0022 13 8 0.0605 -4.8144 -0.0022 14 7 1.9500 -5.9814 0.0034 15 6 1.2524 -7.1931 0.1030 16 6 0.0061 -7.3285 -0.4924 17 6 -0.6778 -8.5251 -0.3978 18 6 -0.1266 -9.5863 0.3004 19 9 -0.8003 -10.7534 0.3960 20 6 1.1142 -9.4534 0.9003 21 6 1.8052 -8.2593 0.8035 22 9 3.0157 -8.1289 1.3891 23 1 -0.4850 0.8400 0.0004 24 1 2.9199 -3.6471 -0.0013 25 1 2.9178 -5.9830 -0.0615 26 1 -0.4273 -6.4998 -1.0328 27 1 -1.6458 -8.6313 -0.8648 28 1 1.5425 -10.2824 1.4441 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000171230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:58 Heat of formation + Delta-G solvation = -149.269446 kcal Electronic energy + Delta-G solvation = -19605.297688 eV Core-core repulsion = 15870.797011 eV Total energy + Delta-G solvation = -3734.500677 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.08840 -49.98349 -41.99687 -39.99696 -38.36091 -35.83667 -35.09448 -34.51075 -31.92504 -30.28247 -28.69205 -25.09180 -24.25514 -23.05481 -21.49168 -20.31255 -19.58976 -19.05113 -18.20324 -17.91399 -17.44723 -17.10103 -16.74361 -16.57225 -16.32179 -16.11720 -15.63908 -15.52307 -15.07786 -14.61547 -14.47361 -13.98966 -13.54787 -13.30090 -13.23029 -12.81082 -12.76675 -12.66115 -12.02389 -11.65113 -11.34770 -11.02719 -10.61993 -10.12289 -9.88955 -9.21213 -8.40007 -7.02730 -0.20569 -0.05949 1.36182 1.40154 1.50080 1.61944 1.69187 2.24992 2.30161 2.55593 2.76912 3.20755 3.29376 3.54071 3.56600 3.82592 4.05296 4.31355 4.64128 4.85401 4.95692 5.03689 5.22126 5.23554 5.33612 5.56028 5.73170 5.90248 6.33698 6.71832 6.93106 7.55455 8.26721 8.53142 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.045480 B = 0.003928 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.503111 B = 7127.056018 C = 7646.713898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.024 3.976 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.552 4.552 8 H 0.108 0.892 9 C 0.522 3.478 10 O -0.576 6.576 11 N -0.678 5.678 12 C 0.689 3.311 13 O -0.575 6.575 14 N -0.667 5.667 15 C 0.116 3.884 16 C -0.085 4.085 17 C -0.134 4.134 18 C 0.108 3.892 19 F -0.131 7.131 20 C -0.158 4.158 21 C 0.100 3.900 22 F -0.126 7.126 23 H 0.280 0.720 24 H 0.416 0.584 25 H 0.426 0.574 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.466 -15.219 -0.092 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.193 4.193 3 Si 0.828 3.172 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.588 4.588 8 H 0.126 0.874 9 C 0.329 3.671 10 O -0.457 6.457 11 N -0.344 5.344 12 C 0.390 3.610 13 O -0.450 6.450 14 N -0.319 5.319 15 C 0.019 3.981 16 C -0.105 4.105 17 C -0.153 4.153 18 C 0.088 3.912 19 F -0.110 7.110 20 C -0.178 4.178 21 C 0.078 3.922 22 F -0.105 7.105 23 H 0.090 0.910 24 H 0.253 0.747 25 H 0.265 0.735 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.526 -15.054 -0.053 16.408 hybrid contribution 0.972 0.563 0.054 1.125 sum 7.498 -14.491 0.000 16.316 Atomic orbital electron populations 1.70176 1.09923 1.29750 1.34534 1.27166 0.95574 1.05466 0.91060 0.84838 0.78759 0.74064 0.79577 1.18434 1.20135 1.16428 1.21452 0.95476 0.88339 1.53513 0.87384 1.19025 0.87369 0.83124 0.77592 1.90715 1.15834 1.86256 1.52860 1.44357 1.12231 1.04868 1.72976 1.16551 0.85579 0.81131 0.77698 1.90958 1.13300 1.86184 1.54602 1.42485 1.10965 1.01944 1.76521 1.17776 0.95198 0.85281 0.99811 1.21082 0.93526 0.97834 0.98086 1.21273 1.02259 0.91064 1.00737 1.17226 0.91233 0.82365 1.00386 1.91525 1.79436 1.45427 1.94572 1.21018 0.94609 0.98188 1.03943 1.16941 0.83591 0.94333 0.97367 1.91515 1.40835 1.96333 1.81796 0.91024 0.74704 0.73518 0.84696 0.82022 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.55 11.83 21.85 0.26 -48.29 15 2 C 0.02 1.25 5.50 85.32 0.47 1.72 15 3 Si 1.01 38.05 29.56 68.60 2.03 40.07 15 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 5 H -0.28 -10.27 7.11 99.48 0.71 -9.57 15 6 H -0.24 -8.20 7.11 99.48 0.71 -7.49 15 7 C -0.55 -29.02 9.54 24.81 0.24 -28.78 15 8 H 0.11 4.77 7.85 -2.91 -0.02 4.75 15 9 C 0.52 29.57 7.68 86.32 0.66 30.23 15 10 O -0.58 -39.37 13.42 18.53 0.25 -39.12 15 11 N -0.68 -29.18 5.24 -444.50 -2.33 -31.51 15 12 C 0.69 29.45 8.35 179.05 1.50 30.95 15 13 O -0.58 -30.75 12.15 18.84 0.23 -30.52 15 14 N -0.67 -20.27 5.24 -316.96 -1.66 -21.93 15 15 C 0.12 3.37 6.32 38.13 0.24 3.61 15 16 C -0.08 -2.57 8.70 22.38 0.19 -2.37 15 17 C -0.13 -3.20 10.02 22.31 0.22 -2.98 15 18 C 0.11 2.32 7.30 22.38 0.16 2.48 15 19 F -0.13 -2.73 17.26 44.97 0.78 -1.95 15 20 C -0.16 -3.11 10.00 22.34 0.22 -2.88 15 21 C 0.10 2.35 7.31 22.48 0.16 2.52 15 22 F -0.13 -2.82 16.96 44.97 0.76 -2.06 15 23 H 0.28 15.04 8.29 -92.71 -0.77 14.27 15 24 H 0.42 13.26 8.69 -92.71 -0.81 12.46 15 25 H 0.43 9.42 8.68 -92.71 -0.81 8.62 15 26 H 0.14 4.98 6.19 -2.90 -0.02 4.96 15 27 H 0.16 3.20 8.06 -2.91 -0.02 3.17 15 28 H 0.18 2.44 8.06 -2.91 -0.02 2.42 15 Total: -1.00 -79.88 269.50 4.04 -75.84 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.35 Total: 24.98 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 4.07 Total: 34.49 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.73 Total: -101.73 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: 0.48 Total: -69.65 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 1.54 Total: -4.01 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.07 kcal Total: -79.88 4.04 -75.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.432 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds