Wall clock time and date at job start Mon Mar 30 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 O 1.42901 * 109.47098 * 119.99865 * 2 1 3 5 5 C 1.35896 * 117.00114 * 155.08631 * 4 2 1 6 6 C 1.38732 * 120.05436 * 5.47013 * 5 4 2 7 7 C 1.38148 * 119.94278 * 180.30164 * 6 5 4 8 8 C 1.38267 * 120.05631 * 359.42690 * 7 6 5 9 9 S 1.76198 * 119.94423 * 180.30205 * 8 7 6 10 10 O 1.42094 * 106.40548 * 23.83464 * 9 8 7 11 11 O 1.42100 * 106.40026 * 156.75921 * 9 8 7 12 12 C 1.76207 * 107.21623 * 270.29485 * 9 8 7 13 13 H 1.08003 * 119.99623 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00009 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99994 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99972 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46909 * 90.00472 * 16 14 12 18 18 H 1.48501 * 109.46981 * 210.00307 * 16 14 12 19 19 H 1.48497 * 109.46991 * 330.00602 * 16 14 12 20 20 C 1.38263 * 120.10696 * 0.60124 * 8 7 6 21 21 C 1.38144 * 120.05940 * 359.67284 * 20 8 7 22 22 H 1.09000 * 109.47226 * 300.00152 * 1 2 3 23 23 H 1.09002 * 109.46912 * 60.00208 * 1 2 3 24 24 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47226 * 239.99848 * 2 1 3 26 26 H 1.09000 * 109.47197 * 59.99830 * 3 2 1 27 27 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47060 * 299.99702 * 3 2 1 29 29 H 1.08003 * 120.03227 * 0.03196 * 6 5 4 30 30 H 1.08001 * 119.97250 * 179.70365 * 7 6 5 31 31 H 0.96998 * 120.00322 * 179.97438 * 15 14 12 32 32 H 1.08004 * 119.96989 * 179.70114 * 20 8 7 33 33 H 1.07998 * 120.02708 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2474 -1.2232 1.0985 6 6 4.0364 -1.0201 -0.0244 7 6 5.2952 -1.5850 -0.0940 8 6 5.7735 -2.3424 0.9592 9 16 7.3826 -3.0549 0.8707 10 8 8.1205 -2.2662 -0.0526 11 8 7.7985 -3.2746 2.2116 12 6 7.2081 -4.6473 0.1367 13 1 6.2318 -5.0011 -0.1601 14 6 8.3181 -5.4412 -0.0597 15 7 9.5070 -5.0102 0.3013 16 14 8.1332 -7.1291 -0.8385 17 1 8.2644 -7.0109 -2.3129 18 1 9.1906 -8.0327 -0.3182 19 1 6.7978 -7.6852 -0.5033 20 6 4.9889 -2.5467 2.0792 21 6 3.7272 -1.9887 2.1513 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 3.6652 -0.4245 -0.8453 30 1 5.9079 -1.4312 -0.9700 31 1 10.2879 -5.5689 0.1635 32 1 5.3629 -3.1427 2.8986 33 1 3.1146 -2.1489 3.0262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004290638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:29 Heat of formation + Delta-G solvation = -109.699415 kcal Electronic energy + Delta-G solvation = -18367.780900 eV Core-core repulsion = 15292.376838 eV Total energy + Delta-G solvation = -3075.404062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19975 -37.48253 -35.20223 -33.93104 -33.39658 -33.07653 -30.71094 -29.60382 -27.50890 -26.13052 -23.41781 -22.51663 -20.87086 -18.76411 -18.31904 -17.25443 -16.23466 -15.87673 -15.55202 -14.96740 -14.64947 -14.18879 -13.96433 -13.69412 -13.46339 -13.14565 -12.89144 -12.57791 -12.38750 -12.34033 -12.06170 -11.87231 -11.28816 -11.22221 -11.18104 -10.86955 -10.59698 -10.58688 -10.25244 -10.13987 -9.60796 -9.24809 -8.79696 -8.75718 -8.20025 -6.70910 -5.33387 1.36267 1.61993 2.19472 3.07849 3.10328 3.14604 3.21593 3.85645 4.08862 4.54026 4.63701 4.66542 4.82420 5.01972 5.04608 5.26846 5.31913 5.43867 5.46877 5.50017 5.60900 5.69394 5.83314 5.85874 5.89921 5.92910 6.21439 6.26470 6.48348 6.53626 6.96845 7.02330 7.30661 7.48159 7.95296 8.87093 10.23650 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.004868 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.158848 B = 5749.966387 C = 6008.206579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.182 4.182 4 O -0.311 6.311 5 C 0.161 3.839 6 C -0.237 4.237 7 C 0.012 3.988 8 C -0.679 4.679 9 S 2.609 3.391 10 O -0.987 6.987 11 O -0.986 6.986 12 C -1.002 5.002 13 H 0.104 0.896 14 C 0.132 3.868 15 N -0.843 5.843 16 Si 0.923 3.077 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.262 1.262 20 C 0.011 3.989 21 C -0.179 4.179 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.292 0.708 32 H 0.147 0.853 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 7.247 -1.705 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.239 4.239 4 O -0.225 6.225 5 C 0.116 3.884 6 C -0.256 4.256 7 C -0.006 4.006 8 C -0.761 4.761 9 S 2.790 3.210 10 O -0.984 6.984 11 O -0.983 6.983 12 C -1.135 5.135 13 H 0.122 0.878 14 C -0.086 4.086 15 N -0.472 5.472 16 Si 0.746 3.254 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.008 4.008 21 C -0.198 4.198 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.213 7.703 -1.224 16.212 hybrid contribution -0.809 -0.992 -0.860 1.542 sum -15.021 6.711 -2.084 16.584 Atomic orbital electron populations 1.21848 0.92501 1.03170 1.02939 1.22469 0.95333 0.92776 0.87722 1.22400 1.02603 0.95874 1.03021 1.86107 1.29581 1.67988 1.38831 1.19153 0.83751 0.91254 0.94288 1.21327 0.96965 1.08076 0.99253 1.20805 0.93592 0.89736 0.96515 1.31524 1.28010 1.15152 1.01378 1.00866 0.70393 0.75725 0.73999 1.93328 1.67828 1.72624 1.64643 1.93332 1.79108 1.87199 1.38682 1.30162 1.01693 1.23612 1.58081 0.87753 1.24766 0.93260 0.99769 0.90781 1.69899 0.99468 1.38716 1.39115 0.86126 0.79152 0.80429 0.79663 1.19132 1.19884 1.18576 1.20847 0.91218 0.92921 0.95769 1.20503 0.97590 1.02637 0.99102 0.91511 0.90560 0.91622 0.90593 0.91459 0.91484 0.91010 0.85101 0.84038 0.89797 0.83568 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 2 C 0.07 0.76 2.85 -26.73 -0.08 0.68 16 3 C -0.18 -1.66 9.17 37.16 0.34 -1.32 16 4 O -0.31 -4.30 9.80 -19.41 -0.19 -4.49 16 5 C 0.16 2.57 6.60 -39.22 -0.26 2.31 16 6 C -0.24 -3.78 8.24 -39.43 -0.32 -4.11 16 7 C 0.01 0.23 9.51 -39.60 -0.38 -0.15 16 8 C -0.68 -14.59 5.81 -39.56 -0.23 -14.82 16 9 S 2.61 69.26 4.65 -107.50 -0.50 68.76 16 10 O -0.99 -28.38 17.16 -57.17 -0.98 -29.36 16 11 O -0.99 -28.37 17.16 -57.17 -0.98 -29.35 16 12 C -1.00 -27.37 9.58 30.60 0.29 -27.08 16 13 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 14 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 15 N -0.84 -24.43 13.19 55.43 0.73 -23.70 16 16 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 C 0.01 0.21 9.51 -39.61 -0.38 -0.16 16 21 C -0.18 -2.97 9.99 -39.43 -0.39 -3.37 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.76 6.32 -51.93 -0.33 0.44 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.69 6.90 -51.93 -0.36 0.34 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.13 1.67 5.43 -52.48 -0.28 1.38 16 30 H 0.14 2.57 7.62 -52.49 -0.40 2.17 16 31 H 0.29 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.15 2.67 7.61 -52.48 -0.40 2.27 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -34.05 297.88 -7.45 -41.50 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.85 Total: 2.14 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: -1.15 Total: -45.28 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.73 Total: -23.70 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -2.15 Total: -63.20 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 69.26 SS G_CDS: -0.50 Total: 68.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.05 -7.45 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004290638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.197 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds