Wall clock time and date at job start Mon Mar 30 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36174 * 120.08977 * 2 1 4 4 C 1.39274 * 121.06733 * 180.02562 * 3 2 1 5 5 C 1.36228 * 120.83812 * 0.06777 * 4 3 2 6 6 C 1.40436 * 119.65469 * 359.91145 * 5 4 3 7 7 C 1.40682 * 121.08894 * 180.02562 * 6 5 4 8 8 C 1.38804 * 118.09992 * 180.02562 * 7 6 5 9 9 C 1.43198 * 120.31338 * 179.97438 * 8 7 6 10 10 N 6.72702 * 119.58222 * 180.02562 * 2 1 3 11 11 C 1.41595 * 119.37841 * 0.02562 * 8 7 6 12 12 S 1.76207 * 119.35333 * 179.72035 * 11 8 7 13 13 C 1.76201 * 100.00048 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99700 * 180.02562 * 13 12 11 16 16 N 1.31536 * 120.00576 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99625 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47192 * 59.99655 * 17 15 13 19 19 H 1.48499 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47350 * 299.99662 * 17 15 13 21 21 N 1.31671 * 121.29514 * 0.02562 * 11 8 7 22 22 C 1.33744 * 121.64282 * 359.97438 * 21 11 8 23 23 H 1.08997 * 109.46766 * 269.97184 * 1 2 3 24 24 H 1.09002 * 109.47178 * 29.97920 * 1 2 3 25 25 H 1.09000 * 109.47078 * 149.97995 * 1 2 3 26 26 H 1.08003 * 119.46390 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.58122 * 180.02562 * 4 3 2 28 28 H 1.08004 * 120.17071 * 179.97438 * 5 4 3 29 29 H 1.07992 * 120.95270 * 0.02562 * 7 6 5 30 30 H 0.97001 * 120.00444 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.1782 0.0000 4 6 3.5823 1.2020 -0.0005 5 6 4.3005 0.0444 -0.0025 6 6 3.6298 -1.1894 -0.0020 7 6 4.3413 -2.4031 -0.0034 8 6 3.6156 -3.5863 -0.0035 9 6 4.2916 -4.8487 -0.0054 10 7 4.8280 -5.8501 -0.0026 11 6 2.2007 -3.5334 -0.0027 12 16 1.2802 -5.0359 -0.0102 13 6 -0.3593 -4.3904 -0.0054 14 1 -0.5190 -3.3223 0.0002 15 6 -1.4454 -5.2546 -0.0088 16 7 -1.2509 -6.5555 -0.0161 17 14 -3.1836 -4.5702 -0.0044 18 1 -3.3884 -3.7316 -1.2128 19 1 -4.1571 -5.6915 -0.0097 20 1 -3.3869 -3.7433 1.2121 21 7 1.5592 -2.3835 -0.0024 22 6 2.2117 -1.2161 -0.0023 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6425 2.1093 0.0004 27 1 4.0994 2.1502 -0.0001 28 1 5.3801 0.0754 -0.0033 29 1 5.4211 -2.4138 -0.0045 30 1 -2.0100 -7.1594 -0.0180 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005007335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:47 Heat of formation + Delta-G solvation = 67.973554 kcal Electronic energy + Delta-G solvation = -16929.160688 eV Core-core repulsion = 14201.062775 eV Total energy + Delta-G solvation = -2728.097913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32968 -37.17391 -35.78581 -33.76277 -32.82138 -30.96225 -30.32451 -26.67022 -25.78881 -24.37894 -23.70864 -20.74910 -19.30187 -18.49725 -16.99668 -16.83860 -15.33365 -15.05880 -14.68208 -14.41635 -14.14994 -13.62775 -13.31940 -13.15293 -12.89254 -12.65191 -12.39517 -12.35223 -11.87087 -11.51520 -11.46365 -11.19639 -11.16974 -11.16298 -10.95110 -10.24569 -9.94229 -9.48064 -9.00306 -8.79966 -8.70104 -7.94233 -6.89243 -6.59878 -4.30201 0.54136 1.02071 2.16811 2.81153 2.92603 3.01142 3.14227 3.15470 3.20701 3.69744 3.89142 4.19222 4.47619 4.71383 4.82109 4.87314 5.04833 5.16426 5.21493 5.38880 5.41263 5.52771 5.75412 5.98569 6.05695 6.10054 6.13103 6.25649 6.54776 6.65411 6.71154 6.84983 7.17664 7.45897 7.83749 8.29750 8.47206 8.91702 10.47202 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.007675 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.695216 B = 3647.462814 C = 5369.008452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.076 4.076 3 C -0.095 4.095 4 C -0.147 4.147 5 C -0.079 4.079 6 C -0.148 4.148 7 C 0.009 3.991 8 C -0.083 4.083 9 C 0.267 3.733 10 N -0.419 5.419 11 C 0.145 3.855 12 S 0.143 5.857 13 C -0.535 4.535 14 H 0.115 0.885 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.931 3.069 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.268 1.268 21 N -0.480 5.480 22 C 0.184 3.816 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 13.504 0.006 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.167 4.167 5 C -0.098 4.098 6 C -0.156 4.156 7 C -0.021 4.021 8 C -0.095 4.095 9 C -0.048 4.048 10 N -0.095 5.095 11 C -0.116 4.116 12 S 0.397 5.603 13 C -0.683 4.683 14 H 0.132 0.868 15 C -0.136 4.136 16 N -0.500 5.500 17 Si 0.756 3.244 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.193 1.193 21 N -0.196 5.196 22 C 0.053 3.947 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.367 10.307 -0.001 12.115 hybrid contribution -0.667 1.976 0.029 2.086 sum 5.700 12.283 0.028 13.542 Atomic orbital electron populations 1.20673 0.90422 1.02929 1.02398 1.19536 0.96566 0.90783 1.00957 1.20699 0.94205 0.97205 0.99463 1.20635 0.93996 0.97908 1.04210 1.20830 0.99195 0.91291 0.98493 1.18461 0.94101 0.93643 1.09395 1.21561 0.99371 0.89978 0.91176 1.16575 0.92498 0.87395 1.13073 1.25304 0.93209 0.92712 0.93609 1.81151 1.09209 1.09844 1.09336 1.24426 0.91552 1.00590 0.95018 1.83807 1.01741 0.97552 1.77202 1.23510 0.89166 0.98156 1.57513 0.86769 1.25229 1.00699 0.94531 0.93155 1.69929 1.33157 1.02107 1.44830 0.85991 0.80215 0.78613 0.79552 1.19269 1.20728 1.19271 1.68609 1.36204 0.95732 1.19073 1.18959 0.89259 0.92629 0.93833 0.91392 0.92367 0.89866 0.86092 0.86322 0.85969 0.84132 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.79 36.01 0.35 -1.24 16 2 C -0.08 -1.18 5.89 -104.49 -0.62 -1.79 16 3 C -0.10 -1.19 9.58 -39.94 -0.38 -1.57 16 4 C -0.15 -1.67 9.96 -39.92 -0.40 -2.06 16 5 C -0.08 -0.96 9.76 -39.48 -0.39 -1.34 16 6 C -0.15 -2.28 5.74 -106.77 -0.61 -2.89 16 7 C 0.01 0.13 9.63 -38.45 -0.37 -0.24 16 8 C -0.08 -1.51 5.77 -106.48 -0.61 -2.12 16 9 C 0.27 4.98 14.25 -22.47 -0.32 4.66 16 10 N -0.42 -8.25 18.54 41.84 0.78 -7.48 16 11 C 0.15 3.11 7.01 -16.34 -0.11 3.00 16 12 S 0.14 3.52 20.59 -107.50 -2.21 1.31 16 13 C -0.54 -14.16 9.25 30.94 0.29 -13.88 16 14 H 0.11 2.98 6.52 -52.49 -0.34 2.64 16 15 C 0.07 1.95 5.49 -17.47 -0.10 1.85 16 16 N -0.87 -23.81 13.22 55.49 0.73 -23.07 16 17 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 N -0.48 -10.16 7.39 -9.44 -0.07 -10.23 16 22 C 0.18 3.33 6.59 -84.79 -0.56 2.77 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16 26 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 27 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 28 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -28.92 290.13 -7.66 -36.57 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.40 Total: -1.79 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.83 Total: -14.87 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.44 Total: -40.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.21 Total: 1.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.92 -7.66 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005007335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.548 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds