Wall clock time and date at job start Mon Mar 30 2020 00:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36174 * 120.08977 * 2 1 4 4 C 1.39274 * 121.06733 * 180.02562 * 3 2 1 5 5 C 1.36228 * 120.83812 * 0.06777 * 4 3 2 6 6 C 1.40436 * 119.65469 * 359.91145 * 5 4 3 7 7 C 1.40682 * 121.08894 * 180.02562 * 6 5 4 8 8 C 1.38804 * 118.09992 * 180.02562 * 7 6 5 9 9 C 1.43198 * 120.31338 * 179.97438 * 8 7 6 10 10 N 6.72702 * 119.58222 * 180.02562 * 2 1 3 11 11 C 1.41595 * 119.37841 * 0.02562 * 8 7 6 12 12 S 1.76207 * 119.35333 * 179.72035 * 11 8 7 13 13 C 1.76201 * 100.00048 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99788 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99700 * 180.02562 * 13 12 11 16 16 N 1.31536 * 120.00576 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99625 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47192 * 59.99655 * 17 15 13 19 19 H 1.48499 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47350 * 299.99662 * 17 15 13 21 21 N 1.31671 * 121.29514 * 0.02562 * 11 8 7 22 22 C 1.33744 * 121.64282 * 359.97438 * 21 11 8 23 23 H 1.08997 * 109.46766 * 269.97184 * 1 2 3 24 24 H 1.09002 * 109.47178 * 29.97920 * 1 2 3 25 25 H 1.09000 * 109.47078 * 149.97995 * 1 2 3 26 26 H 1.08003 * 119.46390 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.58122 * 180.02562 * 4 3 2 28 28 H 1.08004 * 120.17071 * 179.97438 * 5 4 3 29 29 H 1.07992 * 120.95270 * 0.02562 * 7 6 5 30 30 H 0.97001 * 120.00444 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.1782 0.0000 4 6 3.5823 1.2020 -0.0005 5 6 4.3005 0.0444 -0.0025 6 6 3.6298 -1.1894 -0.0020 7 6 4.3413 -2.4031 -0.0034 8 6 3.6156 -3.5863 -0.0035 9 6 4.2916 -4.8487 -0.0054 10 7 4.8280 -5.8501 -0.0026 11 6 2.2007 -3.5334 -0.0027 12 16 1.2802 -5.0359 -0.0102 13 6 -0.3593 -4.3904 -0.0054 14 1 -0.5190 -3.3223 0.0002 15 6 -1.4454 -5.2546 -0.0088 16 7 -1.2509 -6.5555 -0.0161 17 14 -3.1836 -4.5702 -0.0044 18 1 -3.3884 -3.7316 -1.2128 19 1 -4.1571 -5.6915 -0.0097 20 1 -3.3869 -3.7433 1.2121 21 7 1.5592 -2.3835 -0.0024 22 6 2.2117 -1.2161 -0.0023 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6425 2.1093 0.0004 27 1 4.0994 2.1502 -0.0001 28 1 5.3801 0.0754 -0.0033 29 1 5.4211 -2.4138 -0.0045 30 1 -2.0100 -7.1594 -0.0180 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005007335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:46 Heat of formation + Delta-G solvation = 51.575392 kcal Electronic energy + Delta-G solvation = -16929.871766 eV Core-core repulsion = 14201.062775 eV Total energy + Delta-G solvation = -2728.808991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64252 -38.49198 -37.22191 -35.03405 -34.72915 -32.26681 -31.58619 -28.05726 -27.50884 -25.67937 -25.06587 -21.94523 -20.61500 -20.17923 -18.46976 -18.24678 -16.97687 -16.47247 -16.14647 -15.82035 -15.28894 -15.04295 -14.68329 -14.58317 -14.33403 -13.96070 -13.75469 -13.70741 -13.34292 -13.01941 -13.00808 -12.87243 -12.61212 -12.31699 -12.25940 -11.91378 -11.29683 -11.21333 -10.87378 -10.25637 -10.12309 -9.18030 -8.58416 -8.51092 -6.29148 -0.67597 -0.31009 0.98048 1.13777 1.36761 1.40165 1.48560 1.55729 1.64587 2.12445 2.35124 2.78574 2.90253 3.02034 3.19745 3.67194 3.74725 3.89598 4.08680 4.18594 4.37946 4.43128 4.56431 4.80546 4.86932 4.92974 4.96904 5.10668 5.42410 5.48059 5.55731 5.59738 5.68196 6.06895 6.30066 6.38224 6.95231 7.02277 8.58248 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.007675 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.695216 B = 3647.462814 C = 5369.008452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.075 4.075 4 C -0.128 4.128 5 C -0.073 4.073 6 C -0.147 4.147 7 C 0.040 3.960 8 C -0.105 4.105 9 C 0.282 3.718 10 N -0.445 5.445 11 C 0.150 3.850 12 S 0.042 5.958 13 C -0.545 4.545 14 H 0.105 0.895 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.995 3.005 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.262 1.262 21 N -0.504 5.504 22 C 0.144 3.856 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.193 0.807 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 18.693 0.013 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C -0.095 4.095 4 C -0.148 4.148 5 C -0.092 4.092 6 C -0.153 4.153 7 C 0.011 3.989 8 C -0.117 4.117 9 C -0.033 4.033 10 N -0.122 5.122 11 C -0.113 4.113 12 S 0.292 5.708 13 C -0.693 4.693 14 H 0.123 0.877 15 C -0.183 4.183 16 N -0.545 5.545 17 Si 0.817 3.183 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.187 1.187 21 N -0.219 5.219 22 C 0.016 3.984 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.174 0.826 27 H 0.184 0.816 28 H 0.186 0.814 29 H 0.210 0.790 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.796 15.624 0.006 17.930 hybrid contribution -1.093 0.955 0.026 1.452 sum 7.703 16.579 0.033 18.281 Atomic orbital electron populations 1.20621 0.90772 1.02599 1.02140 1.19766 0.96858 0.91205 1.03008 1.21207 0.95340 0.97129 0.95777 1.21265 0.93400 0.99725 1.00374 1.21347 1.01575 0.89577 0.96674 1.18859 0.93019 0.95611 1.07835 1.22129 1.01561 0.88099 0.87131 1.16568 0.91089 0.88557 1.15513 1.25354 0.92591 0.92613 0.92757 1.81144 1.10393 1.10078 1.10547 1.24036 0.92425 0.99176 0.95638 1.83783 1.02716 1.01554 1.82757 1.23530 0.89956 0.97670 1.58143 0.87671 1.26136 1.04530 0.94754 0.92909 1.70053 1.33958 1.03248 1.47214 0.85035 0.75500 0.78100 0.79691 1.18692 1.19852 1.18692 1.68464 1.38010 0.96820 1.18559 1.19493 0.91251 0.92190 0.95504 0.91713 0.89228 0.93620 0.82575 0.81640 0.81376 0.78983 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 9.79 71.24 0.70 -2.33 16 2 C -0.11 -3.04 5.89 -19.78 -0.12 -3.15 16 3 C -0.07 -1.43 9.58 22.04 0.21 -1.22 16 4 C -0.13 -1.91 9.96 22.05 0.22 -1.69 16 5 C -0.07 -1.24 9.76 22.34 0.22 -1.03 16 6 C -0.15 -3.92 5.74 -21.26 -0.12 -4.05 16 7 C 0.04 1.03 9.63 23.00 0.22 1.25 16 8 C -0.10 -3.80 5.77 -21.07 -0.12 -3.92 16 9 C 0.28 10.68 14.25 88.33 1.26 11.94 16 10 N -0.45 -17.93 18.54 19.00 0.35 -17.57 16 11 C 0.15 6.77 7.01 85.55 0.60 7.37 16 12 S 0.04 2.25 20.59 -56.49 -1.16 1.09 16 13 C -0.55 -31.07 9.25 67.96 0.63 -30.44 16 14 H 0.11 5.94 6.52 -2.91 -0.02 5.92 16 15 C 0.02 1.23 5.49 84.87 0.47 1.69 16 16 N -0.91 -53.44 13.22 21.64 0.29 -53.15 16 17 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 N -0.50 -22.06 7.39 -183.79 -1.36 -23.42 16 22 C 0.14 5.00 6.59 40.30 0.27 5.26 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 25 H 0.04 1.65 7.53 -2.39 -0.02 1.64 16 26 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 27 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 28 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 29 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.83 290.13 5.75 -66.08 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.18 Total: 1.69 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.43 Total: -20.31 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -0.72 Total: -94.14 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.16 Total: 1.09 kcal Total: -71.83 5.75 -66.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005007335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.658 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds