Wall clock time and date at job start Mon Mar 30 2020 01:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99900 * 2 1 4 4 C 1.50699 * 109.46847 * 66.05260 * 3 2 1 5 5 H 1.08009 * 119.99755 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00005 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99934 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99839 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46900 * 59.99975 * 8 6 4 10 10 H 1.48497 * 109.46802 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47155 * 299.99940 * 8 6 4 12 12 C 1.38487 * 110.99675 * 236.05334 * 2 1 3 13 13 N 1.32614 * 119.54110 * 65.38031 * 12 2 1 14 14 C 1.31649 * 121.65531 * 179.97438 * 13 12 2 15 15 C 1.39638 * 120.53458 * 0.02562 * 14 13 12 16 16 C 1.47399 * 120.48107 * 180.02562 * 15 14 13 17 17 O 1.21513 * 120.00248 * 179.97438 * 16 15 14 18 18 O 1.34762 * 119.99878 * 0.02562 * 16 15 14 19 19 C 1.40380 * 119.04270 * 359.97438 * 15 14 13 20 20 C 1.36942 * 118.48239 * 0.02562 * 19 15 14 21 21 Cl 1.73597 * 120.31928 * 180.02562 * 20 19 15 22 22 H 1.09001 * 109.46941 * 178.17924 * 1 2 3 23 23 H 1.09003 * 109.47015 * 298.17171 * 1 2 3 24 24 H 1.08997 * 109.47925 * 58.17748 * 1 2 3 25 25 H 1.08996 * 109.47276 * 186.05244 * 3 2 1 26 26 H 1.09004 * 109.47069 * 306.05183 * 3 2 1 27 27 H 0.96996 * 119.99755 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.73397 * 180.27807 * 14 13 12 29 29 H 0.96696 * 117.00187 * 180.02562 * 18 16 15 30 30 H 1.08003 * 120.76139 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5112 2.0486 6 6 2.0268 3.3494 1.5286 7 7 2.7118 4.0019 0.6151 8 14 1.5819 4.1870 3.1380 9 1 2.1737 3.4299 4.2702 10 1 2.1141 5.5733 3.1381 11 1 0.1046 4.2233 3.2852 12 6 1.9652 -0.7220 -1.0726 13 7 1.7508 -0.2890 -2.3075 14 6 2.2037 -0.9420 -3.3571 15 6 2.9309 -2.1234 -3.1980 16 6 3.4380 -2.8533 -4.3740 17 8 4.0702 -3.8803 -4.2255 18 8 3.2012 -2.3811 -5.6137 19 6 3.1731 -2.6054 -1.9020 20 6 2.6836 -1.8945 -0.8388 21 17 2.9556 -2.4466 0.7844 22 1 -0.3633 -1.0272 -0.0327 23 1 -0.3633 0.4852 0.9060 24 1 -0.3635 0.5418 -0.8731 25 1 3.0796 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8309 27 1 2.9864 4.9179 0.7772 28 1 2.0148 -0.5587 -4.3489 29 1 3.5534 -2.8944 -6.3537 30 1 3.7320 -3.5164 -1.7469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019845234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:13 Heat of formation + Delta-G solvation = -69.035912 kcal Electronic energy + Delta-G solvation = -17946.676354 eV Core-core repulsion = 14767.451544 eV Total energy + Delta-G solvation = -3179.224810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.06383 -40.82318 -38.02638 -37.58515 -37.14120 -34.75705 -33.61795 -31.94014 -29.34617 -27.54299 -25.51973 -24.95828 -23.40018 -22.12867 -19.49727 -18.88846 -18.48383 -17.83118 -17.60916 -16.91333 -16.67340 -16.17605 -15.88585 -15.10763 -14.96530 -14.58942 -14.38662 -14.16751 -13.92785 -13.24686 -13.04932 -12.87420 -12.65005 -12.62768 -12.43226 -12.13097 -12.06827 -12.04149 -11.48973 -11.05223 -10.81501 -10.62465 -9.99827 -9.52292 -8.20534 -6.31109 -0.83284 -0.11803 0.96703 1.30382 1.44498 1.47666 1.55298 1.94661 2.38197 2.44971 2.71126 3.13684 3.32428 3.53909 3.71557 3.84777 4.03459 4.41402 4.56012 4.66907 4.72629 4.94798 5.03567 5.14919 5.19801 5.48692 5.63548 5.96342 5.98954 6.48796 6.57455 6.82235 6.91414 7.38065 8.91025 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.005041 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.139201 B = 5553.655669 C = 6101.051015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.498 5.498 3 C 0.226 3.774 4 C -0.525 4.525 5 H 0.071 0.929 6 C 0.005 3.995 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.264 1.264 12 C 0.340 3.660 13 N -0.529 5.529 14 C 0.180 3.820 15 C -0.189 4.189 16 C 0.554 3.446 17 O -0.537 6.537 18 O -0.496 6.496 19 C 0.004 3.996 20 C -0.086 4.086 21 Cl -0.028 7.028 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.026 0.974 25 H -0.006 1.006 26 H -0.018 1.018 27 H 0.265 0.735 28 H 0.202 0.798 29 H 0.440 0.560 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 -13.719 -9.218 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.221 5.221 3 C 0.102 3.898 4 C -0.563 4.563 5 H 0.089 0.911 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.796 3.204 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.189 1.189 12 C 0.111 3.889 13 N -0.242 5.242 14 C 0.020 3.980 15 C -0.192 4.192 16 C 0.399 3.601 17 O -0.428 6.428 18 O -0.311 6.311 19 C -0.022 4.022 20 C -0.117 4.117 21 Cl 0.001 6.999 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.044 0.956 25 H 0.012 0.988 26 H 0.000 1.000 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.303 0.697 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.158 -13.090 -8.416 15.605 hybrid contribution 0.527 0.058 -0.205 0.569 sum -0.631 -13.031 -8.620 15.637 Atomic orbital electron populations 1.22194 0.84218 1.01367 1.01829 1.60272 1.10199 1.17304 1.34353 1.19306 0.92999 0.81232 0.96270 1.21367 1.35445 0.97480 1.01975 0.91090 1.25892 0.94820 0.97927 1.00664 1.70092 1.39076 1.11952 1.36265 0.85407 0.79001 0.77037 0.79004 1.19346 1.21071 1.18888 1.20513 0.90063 0.89970 0.88342 1.68297 1.22832 1.33408 0.99627 1.23631 0.87495 0.88282 0.98614 1.20057 1.07544 0.99706 0.91932 1.19970 0.75431 0.81362 0.83385 1.90912 1.39384 1.25202 1.87326 1.84505 1.73998 1.56595 1.15985 1.21438 0.93088 0.98742 0.88926 1.21315 1.04168 0.97047 0.89155 1.98374 1.94817 1.88030 1.18668 0.90729 0.90258 0.95564 0.98815 1.00004 0.92632 0.78126 0.69710 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 9.17 127.69 1.17 3.08 16 2 N -0.50 -21.61 4.09 -731.07 -2.99 -24.60 16 3 C 0.23 12.09 4.43 85.56 0.38 12.46 16 4 C -0.52 -29.13 8.54 25.60 0.22 -28.91 16 5 H 0.07 3.79 7.10 -2.91 -0.02 3.77 16 6 C 0.01 0.30 5.46 84.65 0.46 0.77 16 7 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 8 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 C 0.34 12.99 5.25 133.26 0.70 13.69 16 13 N -0.53 -19.13 9.75 -192.18 -1.87 -21.00 16 14 C 0.18 4.84 10.79 85.06 0.92 5.76 16 15 C -0.19 -4.67 5.89 -20.01 -0.12 -4.79 16 16 C 0.55 11.52 8.27 70.23 0.58 12.11 16 17 O -0.54 -13.69 17.19 19.79 0.34 -13.35 16 18 O -0.50 -6.52 12.69 -56.73 -0.72 -7.24 16 19 C 0.00 0.11 9.44 22.49 0.21 0.32 16 20 C -0.09 -2.80 6.32 22.26 0.14 -2.66 16 21 Cl -0.03 -0.88 28.44 -2.72 -0.08 -0.96 16 22 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 23 H 0.08 3.09 6.91 -2.39 -0.02 3.07 16 24 H 0.03 1.02 8.05 -2.39 -0.02 1.00 16 25 H -0.01 -0.37 8.05 -2.39 -0.02 -0.39 16 26 H -0.02 -1.04 8.04 -2.39 -0.02 -1.06 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.20 4.04 7.61 -2.91 -0.02 4.02 16 29 H 0.44 1.42 9.11 -74.06 -0.67 0.75 16 30 H 0.18 3.98 7.73 -2.91 -0.02 3.96 16 Total: -1.00 -69.33 288.88 2.17 -67.16 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: 0.52 Total: -1.75 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.66 Total: 11.82 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.58 Total: -101.29 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.38 Total: -20.59 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -69.33 2.17 -67.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019845234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.874 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds