Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47222 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00244 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00048 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00289 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47217 * 59.99448 * 16 14 12 18 18 H 1.48501 * 109.47579 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47007 * 299.99965 * 16 14 12 20 20 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 21 21 C 1.38137 * 119.94698 * 0.02562 * 20 8 7 22 22 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 23 23 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 24 24 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 25 25 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 26 26 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 27 27 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 28 28 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 29 29 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 30 30 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 31 31 H 0.97003 * 119.99826 * 180.02562 * 15 14 12 32 32 H 1.08007 * 120.02267 * 179.97438 * 20 8 7 33 33 H 1.08003 * 119.97413 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9963 -5.3632 -6.9746 13 1 3.8485 -5.9955 -6.1116 14 6 4.3406 -5.9216 -8.1873 15 7 4.5202 -5.1517 -9.2384 16 14 4.5506 -7.7716 -8.3378 17 1 3.2760 -8.4451 -7.9817 18 1 4.9185 -8.1161 -9.7347 19 1 5.6239 -8.2245 -7.4167 20 6 2.7710 -0.2517 -3.8934 21 6 2.4264 0.2387 -2.6489 22 1 -0.3633 -1.0167 -0.1497 23 1 -0.3633 0.6380 -0.8057 24 1 -0.3634 0.3787 0.9554 25 1 2.3011 -2.6633 -0.9318 26 1 2.9054 -3.5467 -3.1484 27 1 4.2344 -3.8476 -4.7386 28 1 2.5111 -4.0110 -5.1527 29 1 3.0384 -3.5391 -7.5297 30 1 4.7617 -3.3757 -7.1147 31 1 4.7621 -5.5446 -10.0917 32 1 2.9062 0.4263 -4.7232 33 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036325608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -116.361320 kcal Electronic energy + Delta-G solvation = -17667.459709 eV Core-core repulsion = 14591.766765 eV Total energy + Delta-G solvation = -3075.692944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20866 -38.62631 -38.06406 -36.89608 -35.51296 -32.74180 -32.03516 -30.99207 -30.12396 -27.13604 -24.39772 -23.87239 -22.45059 -19.95842 -19.58154 -18.61366 -18.00132 -17.29799 -17.14289 -16.99205 -16.57275 -16.24990 -15.68543 -14.83778 -14.58826 -14.49502 -14.35530 -14.18090 -13.86857 -13.84182 -13.28325 -13.21611 -13.07112 -12.96447 -12.70832 -12.55706 -12.09558 -12.04083 -11.74814 -11.67250 -11.59603 -11.44675 -10.63714 -10.16174 -9.58839 -8.28841 -6.42843 -0.76502 -0.09374 0.23452 1.40628 1.44058 1.52097 1.98766 2.15472 2.41356 2.43802 3.06012 3.11617 3.26017 3.69454 3.82158 4.09791 4.18409 4.20513 4.23141 4.25393 4.44387 4.54939 4.65865 4.84988 4.94136 5.03615 5.05589 5.23217 5.29792 5.42590 5.60031 5.71841 6.03162 6.34395 6.71848 7.27728 8.83944 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046721 B = 0.003219 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.159149 B = 8697.039197 C = 9071.328334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.521 3.479 3 O -0.976 6.976 4 O -0.979 6.979 5 C -0.708 4.708 6 C 0.012 3.988 7 C -0.243 4.243 8 C 0.162 3.838 9 O -0.332 6.332 10 C 0.078 3.922 11 C 0.028 3.972 12 C -0.549 4.549 13 H 0.072 0.928 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.975 3.025 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.190 4.190 21 C 0.013 3.987 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.154 0.846 25 H 0.163 0.837 26 H 0.142 0.858 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.001 0.999 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.145 0.855 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 9.677 18.471 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.703 3.297 3 O -0.974 6.974 4 O -0.976 6.976 5 C -0.793 4.793 6 C -0.006 4.006 7 C -0.262 4.262 8 C 0.115 3.885 9 O -0.245 6.245 10 C 0.004 3.996 11 C -0.009 4.009 12 C -0.586 4.586 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.209 4.209 21 C -0.006 4.006 22 H 0.169 0.831 23 H 0.171 0.829 24 H 0.172 0.828 25 H 0.180 0.820 26 H 0.159 0.841 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.048 10.014 18.715 23.484 hybrid contribution 0.085 -1.309 -1.433 1.943 sum -9.963 8.705 17.282 21.765 Atomic orbital electron populations 1.30042 1.19686 1.14181 1.13994 1.04483 0.79758 0.72856 0.72579 1.93526 1.79740 1.37867 1.86241 1.93527 1.79775 1.62430 1.61877 1.30619 1.23219 1.02547 1.22926 1.20973 0.89159 0.94002 0.96482 1.21639 1.09788 1.00928 0.93876 1.19861 0.89717 0.94464 0.84465 1.86142 1.82290 1.27095 1.28955 1.23026 1.00723 0.75966 0.99839 1.18969 0.95688 0.96124 0.90145 1.21373 1.48637 0.92075 0.96555 0.90970 1.26027 0.94348 1.04037 0.95182 1.70108 1.47720 1.37806 1.01341 0.85348 0.79305 0.78141 0.77348 1.18724 1.20870 1.18922 1.20838 1.07909 0.92247 0.99937 1.21003 0.89432 1.00566 0.89571 0.83108 0.82884 0.82769 0.81984 0.84065 0.91764 0.91270 0.98066 0.98326 0.92403 0.83671 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.94 10.80 113.37 1.22 -1.72 16 2 S 2.52 39.16 5.80 -56.49 -0.33 38.84 16 3 O -0.98 -21.49 17.12 -127.65 -2.19 -23.67 16 4 O -0.98 -22.17 17.11 -127.65 -2.18 -24.35 16 5 C -0.71 -14.50 5.66 22.28 0.13 -14.38 16 6 C 0.01 0.29 9.46 22.26 0.21 0.50 16 7 C -0.24 -6.88 9.04 22.37 0.20 -6.68 16 8 C 0.16 5.27 6.69 22.51 0.15 5.42 16 9 O -0.33 -13.22 10.14 -92.41 -0.94 -14.16 16 10 C 0.08 3.25 4.68 71.98 0.34 3.59 16 11 C 0.03 1.48 5.34 29.85 0.16 1.64 16 12 C -0.55 -30.20 9.11 25.60 0.23 -29.97 16 13 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 16 Si 0.98 42.66 29.54 68.60 2.03 44.68 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 C -0.19 -5.15 9.99 22.36 0.22 -4.93 16 21 C 0.01 0.28 9.46 22.25 0.21 0.49 16 22 H 0.15 0.31 8.14 -2.39 -0.02 0.30 16 23 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.16 2.90 7.56 -2.91 -0.02 2.87 16 26 H 0.14 3.84 6.30 -2.91 -0.02 3.82 16 27 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 28 H 0.07 2.63 7.66 -2.39 -0.02 2.61 16 29 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.17 2.66 7.57 -2.91 -0.02 2.64 16 Total: -1.00 -76.52 301.57 1.32 -75.20 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.11 Total: 4.41 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 3.54 Total: -45.42 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -5.31 Total: -62.18 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 39.16 SS G_CDS: -0.33 Total: 38.84 kcal Total: -76.52 1.32 -75.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036325608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.166 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds