Wall clock time and date at job start Mon Mar 30 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 110.54171 * 2 1 4 4 O 1.42100 * 110.54048 * 223.25208 * 2 1 3 5 5 C 1.76194 * 104.45056 * 111.62552 * 2 1 3 6 6 C 1.38287 * 119.97302 * 270.02230 * 5 2 1 7 7 C 1.38247 * 120.11084 * 180.02562 * 6 5 2 8 8 C 1.38168 * 120.05649 * 359.67852 * 7 6 5 9 9 C 1.38708 * 119.94125 * 0.57375 * 8 7 6 10 10 O 1.35904 * 120.05570 * 179.72127 * 9 8 7 11 11 C 1.42903 * 116.99628 * 359.72917 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.38123 * 119.97458 * 90.00137 * 5 2 1 22 22 H 1.08995 * 109.47082 * 308.37496 * 1 2 3 23 23 H 1.08995 * 109.47482 * 68.37536 * 1 2 3 24 24 H 1.08996 * 109.47135 * 188.37710 * 1 2 3 25 25 H 1.08000 * 119.94054 * 359.97438 * 6 5 2 26 26 H 1.08007 * 119.96942 * 179.97438 * 7 6 5 27 27 H 1.08001 * 120.02385 * 180.29699 * 8 7 6 28 28 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 29 29 H 1.09001 * 109.46938 * 299.99774 * 11 10 9 30 30 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 31 31 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 32 32 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 33 33 H 1.08006 * 120.02399 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4256 0.2382 2.6496 7 6 2.7711 -0.2520 3.8952 8 6 2.9390 -1.6107 4.0820 9 6 2.7722 -2.4819 3.0156 10 8 2.9424 -3.8182 3.1954 11 6 3.2985 -4.2560 4.5083 12 6 3.4457 -5.7789 4.5156 13 6 3.8206 -6.2406 5.9003 14 1 3.9422 -5.5199 6.6954 15 6 4.0084 -7.5831 6.1520 16 7 3.8599 -8.4608 5.1840 17 14 4.4739 -8.1554 7.8682 18 1 3.2414 -8.4359 8.6477 19 1 5.2914 -9.3914 7.7732 20 1 5.2588 -7.0938 8.5481 21 6 2.4259 -1.9873 1.7664 22 1 -0.3633 0.6379 0.8056 23 1 -0.3634 0.3787 -0.9553 24 1 -0.3633 -1.0167 0.1497 25 1 2.2906 1.3001 2.5066 26 1 2.9053 0.4272 4.7242 27 1 3.2042 -1.9935 5.0564 28 1 2.5203 -3.9624 5.2128 29 1 4.2439 -3.7985 4.7998 30 1 2.5005 -6.2367 4.2239 31 1 4.2240 -6.0721 3.8112 32 1 3.9917 -9.4053 5.3611 33 1 2.2916 -2.6641 0.9354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036325640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:06 Heat of formation + Delta-G solvation = -89.006147 kcal Electronic energy + Delta-G solvation = -17759.934823 eV Core-core repulsion = 14685.428089 eV Total energy + Delta-G solvation = -3074.506735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.94743 -37.36224 -37.21272 -36.07990 -33.46226 -31.44298 -30.80788 -29.74821 -29.33704 -25.27016 -23.36395 -22.45480 -20.95210 -19.21415 -18.36744 -16.65083 -16.40252 -16.27402 -16.00334 -15.75809 -15.48994 -15.29632 -14.53836 -13.98096 -13.61122 -13.47662 -13.14557 -13.03058 -12.42219 -12.33232 -12.22973 -12.15435 -11.73154 -11.63535 -11.30845 -11.10198 -10.96784 -10.71202 -10.55383 -10.01199 -9.75141 -9.41103 -9.37658 -8.51279 -8.14276 -6.16003 -4.21432 -0.12916 0.77034 1.36371 2.68135 3.23313 3.29446 3.31960 3.39738 3.60660 3.81463 4.00093 4.35477 4.49901 4.65828 4.77095 4.97810 5.03436 5.20492 5.30109 5.35445 5.39532 5.79424 5.86562 5.89406 5.95468 6.22218 6.28603 6.54346 6.60729 7.39879 7.55480 7.69340 7.91216 8.15856 8.83928 9.43368 10.95443 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043938 B = 0.003389 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.114569 B = 8261.046611 C = 8673.507130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.505 3.495 3 O -0.940 6.940 4 O -0.935 6.935 5 C -0.623 4.623 6 C -0.079 4.079 7 C -0.099 4.099 8 C -0.160 4.160 9 C 0.128 3.872 10 O -0.311 6.311 11 C 0.062 3.938 12 C 0.025 3.975 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.067 4.067 22 H 0.131 0.869 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 18.187 -6.734 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.684 3.316 3 O -0.937 6.937 4 O -0.933 6.933 5 C -0.710 4.710 6 C -0.098 4.098 7 C -0.118 4.118 8 C -0.179 4.179 9 C 0.080 3.920 10 O -0.224 6.224 11 C -0.012 4.012 12 C -0.012 4.012 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.086 4.086 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.152 0.848 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.156 0.844 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.032 18.062 -7.545 20.799 hybrid contribution -0.140 -0.659 2.011 2.121 sum -7.172 17.403 -5.534 19.619 Atomic orbital electron populations 1.30215 1.25802 1.12300 1.11641 1.05028 0.77790 0.74512 0.74257 1.93575 1.77400 1.36616 1.86158 1.93602 1.77201 1.61484 1.60967 1.30288 1.17208 1.01747 1.21746 1.20719 0.98193 0.99112 0.91816 1.21065 0.98584 0.94788 0.97339 1.21743 1.02368 0.94256 0.99531 1.19243 0.94493 0.84618 0.93688 1.86223 1.82846 1.17704 1.35653 1.23425 0.98173 1.00309 0.79247 1.19136 0.98782 0.85216 0.98060 1.20948 1.48773 0.92507 0.94527 0.92360 1.24990 0.95068 0.96648 0.97420 1.69968 1.48604 1.02056 1.31961 0.86474 0.78565 0.78341 0.83925 1.20473 1.20992 1.19756 1.20182 0.98856 0.93302 0.96284 0.85006 0.85132 0.84768 0.84389 0.85071 0.84358 0.92946 0.92929 0.95295 0.95239 0.92612 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.38 10.80 101.05 1.09 -2.29 16 2 S 2.50 24.05 5.80 -107.50 -0.62 23.43 16 3 O -0.94 -11.39 17.12 -57.54 -0.99 -12.38 16 4 O -0.94 -12.42 17.12 -57.54 -0.99 -13.40 16 5 C -0.62 -7.42 5.65 -39.61 -0.22 -7.64 16 6 C -0.08 -0.89 9.47 -39.56 -0.37 -1.26 16 7 C -0.10 -1.15 10.04 -39.60 -0.40 -1.55 16 8 C -0.16 -2.28 9.04 -39.43 -0.36 -2.63 16 9 C 0.13 2.10 6.69 -39.22 -0.26 1.84 16 10 O -0.31 -6.12 10.14 -19.44 -0.20 -6.32 16 11 C 0.06 1.28 4.68 37.16 0.17 1.45 16 12 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 13 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 C -0.07 -0.96 9.41 -39.43 -0.37 -1.33 16 22 H 0.13 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.14 1.21 7.57 -52.49 -0.40 0.81 16 26 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.14 1.87 6.30 -52.49 -0.33 1.54 16 28 H 0.05 1.00 7.65 -51.93 -0.40 0.60 16 29 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.15 2.01 7.57 -52.48 -0.40 1.61 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -34.78 301.59 -7.81 -42.59 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.00 Total: -2.96 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -1.28 Total: -26.06 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.31 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -2.17 Total: -32.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 24.05 SS G_CDS: -0.62 Total: 23.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.78 -7.81 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036325640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.418 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds