Wall clock time and date at job start Mon Mar 30 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47238 * 240.00601 * 3 2 1 5 5 H 1.48494 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46981 * 120.00448 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38237 * 119.99999 * 269.72682 * 12 11 10 14 14 C 1.38230 * 119.99851 * 179.76640 * 13 12 11 15 15 C 1.38235 * 120.00073 * 0.50570 * 14 13 12 16 16 S 1.76207 * 119.99917 * 179.72497 * 15 14 13 17 17 N 1.65599 * 107.21574 * 270.02407 * 16 15 14 18 18 O 1.42095 * 106.40033 * 23.56227 * 16 15 14 19 19 O 1.42098 * 106.40180 * 156.48436 * 16 15 14 20 20 C 1.38233 * 120.00245 * 359.74647 * 15 14 13 21 21 C 1.38235 * 120.00062 * 89.99891 * 12 11 10 22 22 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 24 24 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 25 25 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 26 26 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 27 27 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 28 28 H 1.08001 * 119.99665 * 359.97438 * 13 12 11 29 29 H 1.08001 * 119.99972 * 180.22884 * 14 13 12 30 30 H 0.97003 * 119.99930 * 150.00743 * 17 16 15 31 31 H 0.96998 * 120.00395 * 329.99384 * 17 16 15 32 32 H 1.07999 * 120.00212 * 179.97438 * 20 15 14 33 33 H 1.07998 * 119.99945 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9729 -6.5430 -1.1993 14 6 3.9025 -7.5660 -1.1999 15 6 4.3664 -8.0791 -0.0031 16 16 5.5460 -9.3881 -0.0039 17 7 4.6990 -10.8111 -0.0033 18 8 6.2181 -9.3217 -1.2541 19 8 6.2199 -9.3217 1.2453 20 6 3.9046 -7.5656 1.1944 21 6 2.9788 -6.5390 1.1950 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8400 -3.5483 -0.7836 26 1 0.8815 -4.9816 0.8895 27 1 0.8795 -4.9814 -0.8905 28 1 2.6068 -6.1454 -2.1343 29 1 4.2630 -7.9675 -2.1355 30 1 5.0758 -11.6000 -0.4235 31 1 3.8261 -10.8559 0.4174 32 1 4.2667 -7.9668 2.1295 33 1 2.6175 -6.1383 2.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041620059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:55 Heat of formation + Delta-G solvation = -55.896148 kcal Electronic energy + Delta-G solvation = -17605.956057 eV Core-core repulsion = 14565.177830 eV Total energy + Delta-G solvation = -3040.778226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45300 -37.31898 -35.99971 -35.54560 -33.47060 -32.86247 -31.20864 -31.12578 -27.28752 -24.71950 -22.94250 -21.83657 -21.28016 -19.73150 -18.51608 -17.59607 -16.91363 -16.47577 -15.95535 -15.42733 -15.03891 -14.69814 -14.43975 -14.13774 -13.70096 -13.54725 -12.80596 -12.74468 -12.37387 -12.25833 -12.14476 -11.97911 -11.67076 -11.33801 -11.15689 -11.01653 -10.78047 -10.74562 -10.58678 -10.04625 -9.36425 -9.19098 -9.09595 -8.54730 -7.47973 -6.10098 -4.12729 0.21979 0.71743 1.25496 2.93796 3.30539 3.32347 3.34342 3.37962 3.63029 4.32035 4.38288 4.73242 4.78800 4.82274 5.25284 5.26323 5.30641 5.40932 5.61797 5.67454 5.67937 5.93242 5.99196 6.01002 6.12947 6.54833 6.72305 6.78140 7.08906 7.28302 7.67946 8.01621 8.22252 8.46096 8.95652 9.52635 11.00900 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042155 B = 0.003206 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.056217 B = 8731.135864 C = 8916.213249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.083 3.917 12 C -0.005 4.005 13 C -0.139 4.139 14 C -0.018 4.018 15 C -0.686 4.686 16 S 2.705 3.295 17 N -1.250 6.250 18 O -0.967 6.967 19 O -0.964 6.964 20 C -0.024 4.024 21 C -0.121 4.121 22 H 0.263 0.737 23 H -0.011 1.011 24 H 0.030 0.970 25 H 0.332 0.668 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.419 0.581 31 H 0.417 0.583 32 H 0.140 0.860 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -21.805 -0.758 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.313 5.313 11 C -0.046 4.046 12 C -0.005 4.005 13 C -0.158 4.158 14 C -0.038 4.038 15 C -0.775 4.775 16 S 2.794 3.206 17 N -0.923 5.923 18 O -0.956 6.956 19 O -0.954 6.954 20 C -0.044 4.044 21 C -0.140 4.140 22 H 0.073 0.927 23 H 0.006 0.994 24 H 0.048 0.952 25 H 0.148 0.852 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.249 0.751 31 H 0.244 0.756 32 H 0.157 0.843 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.015 -21.390 -0.070 22.219 hybrid contribution -0.940 0.967 -0.921 1.634 sum 5.074 -20.423 -0.992 21.067 Atomic orbital electron populations 1.69943 1.06109 1.27074 1.50593 1.24986 0.94901 0.99442 0.95152 0.86507 0.79405 0.82435 0.78752 1.20195 1.21288 1.20076 1.21123 0.93552 0.90101 1.50852 0.91919 1.19602 0.90501 0.87099 0.95996 1.60768 1.21141 1.00238 1.49191 1.21066 0.93337 0.88814 1.01405 1.20496 0.93758 0.93262 0.93035 1.21262 0.98554 0.97620 0.98385 1.20848 0.92606 0.93993 0.96307 1.30433 1.23820 1.23414 0.99835 1.01376 0.72856 0.72578 0.73750 1.53172 1.34973 1.28829 1.75376 1.93587 1.71806 1.86277 1.43979 1.93606 1.70671 1.86229 1.44855 1.20946 0.92882 0.94263 0.96268 1.21244 0.97695 0.96468 0.98635 0.92747 0.99364 0.95193 0.85158 0.90228 0.94679 0.85075 0.84362 0.75145 0.75647 0.84269 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.49 9.32 -34.44 -0.32 -14.81 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 4.95 5.44 -4.97 -0.03 4.92 16 10 N -0.68 -14.11 6.48 -116.33 -0.75 -14.87 16 11 C 0.08 1.36 5.81 -4.97 -0.03 1.33 16 12 C 0.00 -0.06 5.39 -104.62 -0.56 -0.63 16 13 C -0.14 -1.74 9.70 -39.58 -0.38 -2.13 16 14 C -0.02 -0.21 9.52 -39.59 -0.38 -0.58 16 15 C -0.69 -7.55 5.97 -39.58 -0.24 -7.78 16 16 S 2.71 26.37 6.28 -107.50 -0.68 25.70 16 17 N -1.25 -6.71 9.52 60.35 0.57 -6.13 16 18 O -0.97 -12.31 17.28 -57.17 -0.99 -13.30 16 19 O -0.96 -12.51 17.28 -57.17 -0.99 -13.50 16 20 C -0.02 -0.28 9.52 -39.58 -0.38 -0.65 16 21 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.33 6.64 8.72 -39.29 -0.34 6.30 16 26 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.14 1.32 7.62 -52.49 -0.40 0.92 16 30 H 0.42 1.52 8.96 -34.47 -0.31 1.21 16 31 H 0.42 1.37 8.96 -34.47 -0.31 1.07 16 32 H 0.14 1.32 7.62 -52.49 -0.40 0.92 16 33 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -35.23 303.41 -9.18 -44.40 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.84 Total: 3.09 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.80 Total: -20.77 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.56 Total: -46.71 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.98 Total: -26.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 26.37 SS G_CDS: -0.68 Total: 25.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.23 -9.18 -44.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041620059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.492 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds