Wall clock time and date at job start Mon Mar 30 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47238 * 240.00601 * 3 2 1 5 5 H 1.48494 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46981 * 120.00448 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38237 * 119.99999 * 269.72682 * 12 11 10 14 14 C 1.38230 * 119.99851 * 179.76640 * 13 12 11 15 15 C 1.38235 * 120.00073 * 0.50570 * 14 13 12 16 16 S 1.76207 * 119.99917 * 179.72497 * 15 14 13 17 17 N 1.65599 * 107.21574 * 270.02407 * 16 15 14 18 18 O 1.42095 * 106.40033 * 23.56227 * 16 15 14 19 19 O 1.42098 * 106.40180 * 156.48436 * 16 15 14 20 20 C 1.38233 * 120.00245 * 359.74647 * 15 14 13 21 21 C 1.38235 * 120.00062 * 89.99891 * 12 11 10 22 22 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 24 24 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 25 25 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 26 26 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 27 27 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 28 28 H 1.08001 * 119.99665 * 359.97438 * 13 12 11 29 29 H 1.08001 * 119.99972 * 180.22884 * 14 13 12 30 30 H 0.97003 * 119.99930 * 150.00743 * 17 16 15 31 31 H 0.96998 * 120.00395 * 329.99384 * 17 16 15 32 32 H 1.07999 * 120.00212 * 179.97438 * 20 15 14 33 33 H 1.07998 * 119.99945 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9729 -6.5430 -1.1993 14 6 3.9025 -7.5660 -1.1999 15 6 4.3664 -8.0791 -0.0031 16 16 5.5460 -9.3881 -0.0039 17 7 4.6990 -10.8111 -0.0033 18 8 6.2181 -9.3217 -1.2541 19 8 6.2199 -9.3217 1.2453 20 6 3.9046 -7.5656 1.1944 21 6 2.9788 -6.5390 1.1950 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8400 -3.5483 -0.7836 26 1 0.8815 -4.9816 0.8895 27 1 0.8795 -4.9814 -0.8905 28 1 2.6068 -6.1454 -2.1343 29 1 4.2630 -7.9675 -2.1355 30 1 5.0758 -11.6000 -0.4235 31 1 3.8261 -10.8559 0.4174 32 1 4.2667 -7.9668 2.1295 33 1 2.6175 -6.1383 2.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041620059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:55 Heat of formation + Delta-G solvation = -85.003608 kcal Electronic energy + Delta-G solvation = -17607.218251 eV Core-core repulsion = 14565.177830 eV Total energy + Delta-G solvation = -3042.040420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45342 -38.23231 -37.16789 -36.90563 -34.77864 -34.01883 -32.61183 -32.06513 -29.04217 -26.28212 -23.90079 -23.61151 -22.56609 -20.51579 -19.30721 -18.68726 -18.30394 -17.54101 -16.91361 -16.87315 -16.42466 -16.03502 -15.64317 -15.34121 -15.20983 -14.54472 -14.44905 -13.89243 -13.62835 -13.29002 -13.20072 -13.17744 -13.08329 -12.94875 -12.64831 -12.59275 -12.16293 -12.10611 -11.78528 -11.37169 -11.26616 -10.68567 -10.29546 -10.03923 -9.21214 -8.25387 -6.36639 -0.59010 -0.24850 0.30850 1.40759 1.43721 1.51851 2.17127 2.37665 2.44171 2.80305 3.08299 3.45591 3.57158 3.77108 3.90128 3.93163 4.30179 4.33372 4.58480 4.59350 4.74903 4.96432 5.02856 5.04934 5.11180 5.23123 5.30436 5.51749 5.57498 5.82026 5.97052 6.34922 6.38837 6.62255 6.82855 7.34321 8.85808 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042155 B = 0.003206 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.056217 B = 8731.135864 C = 8916.213249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.087 3.913 12 C -0.023 4.023 13 C -0.143 4.143 14 C -0.021 4.021 15 C -0.682 4.682 16 S 2.736 3.264 17 N -1.231 6.231 18 O -0.994 6.994 19 O -0.994 6.994 20 C -0.026 4.026 21 C -0.131 4.131 22 H 0.266 0.734 23 H -0.033 1.033 24 H 0.005 0.995 25 H 0.336 0.664 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.431 0.569 31 H 0.429 0.571 32 H 0.159 0.841 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -22.794 -0.944 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.315 5.315 11 C -0.042 4.042 12 C -0.024 4.024 13 C -0.162 4.162 14 C -0.040 4.040 15 C -0.770 4.770 16 S 2.824 3.176 17 N -0.910 5.910 18 O -0.984 6.984 19 O -0.984 6.984 20 C -0.045 4.045 21 C -0.150 4.150 22 H 0.075 0.925 23 H -0.016 1.016 24 H 0.023 0.977 25 H 0.153 0.847 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.263 0.737 31 H 0.260 0.740 32 H 0.177 0.823 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.145 -22.408 -0.259 23.521 hybrid contribution -1.300 1.127 -0.862 1.924 sum 5.846 -21.281 -1.121 22.097 Atomic orbital electron populations 1.70063 1.07714 1.28184 1.51263 1.25917 0.95791 1.03292 0.94474 0.85399 0.78138 0.77710 0.79140 1.19146 1.20665 1.19431 1.21502 0.93789 0.91485 1.51018 0.91917 1.19237 0.90527 0.88443 0.93680 1.60598 1.20502 1.00870 1.49481 1.21028 0.94011 0.87648 1.01490 1.20279 0.94432 0.93410 0.94272 1.21411 0.98693 0.97855 0.98253 1.21107 0.92065 0.93484 0.97356 1.30655 1.23142 1.23527 0.99631 1.00331 0.72193 0.72650 0.72441 1.52710 1.35359 1.27612 1.75346 1.93552 1.72881 1.86859 1.45101 1.93578 1.71775 1.86847 1.46162 1.21178 0.92255 0.93659 0.97376 1.21370 0.98158 0.97021 0.98436 0.92498 1.01577 0.97696 0.84711 0.90444 0.94253 0.84089 0.82401 0.73658 0.74050 0.82318 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -30.60 9.32 25.60 0.24 -30.36 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.21 10.95 5.44 85.56 0.47 11.41 16 10 N -0.68 -28.71 6.48 -521.96 -3.38 -32.09 16 11 C 0.09 2.89 5.81 85.56 0.50 3.39 16 12 C -0.02 -0.64 5.39 -19.87 -0.11 -0.74 16 13 C -0.14 -3.41 9.70 22.27 0.22 -3.19 16 14 C -0.02 -0.44 9.52 22.27 0.21 -0.23 16 15 C -0.68 -13.61 5.97 22.27 0.13 -13.48 16 16 S 2.74 47.55 6.28 -56.49 -0.35 47.19 16 17 N -1.23 -9.78 9.52 37.02 0.35 -9.43 16 18 O -0.99 -23.37 17.28 -128.00 -2.21 -25.59 16 19 O -0.99 -23.97 17.28 -128.00 -2.21 -26.18 16 20 C -0.03 -0.54 9.52 22.27 0.21 -0.33 16 21 C -0.13 -3.26 9.70 22.27 0.22 -3.04 16 22 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 23 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 24 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 25 H 0.34 13.55 8.72 -89.70 -0.78 12.77 16 26 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 27 H 0.04 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.16 2.63 7.62 -2.91 -0.02 2.61 16 30 H 0.43 1.88 8.96 -96.74 -0.87 1.01 16 31 H 0.43 1.53 8.96 -96.75 -0.87 0.66 16 32 H 0.16 2.68 7.62 -2.91 -0.02 2.65 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -75.01 303.41 -4.31 -79.32 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -1.36 Total: 11.98 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 2.55 Total: -35.89 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.74 Total: -96.90 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -4.42 Total: -51.77 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.35 Total: 47.19 kcal Total: -75.01 -4.31 -79.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041620059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.682 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds