Wall clock time and date at job start Mon Mar 30 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00217 * 2 1 4 4 H 1.48496 * 109.47466 * 270.00002 * 3 2 1 5 5 H 1.48508 * 109.47087 * 29.99934 * 3 2 1 6 6 H 1.48499 * 109.47189 * 149.99740 * 3 2 1 7 7 C 1.38803 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00299 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99919 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99775 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46665 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99445 * 179.97438 * 11 10 9 14 14 N 1.40095 * 119.99548 * 180.02562 * 13 11 10 15 15 C 1.39827 * 120.00070 * 180.02562 * 14 13 11 16 16 C 1.38878 * 120.04327 * 0.27300 * 15 14 13 17 17 C 1.38123 * 119.94725 * 180.27780 * 16 15 14 18 18 C 1.38468 * 120.04621 * 359.44407 * 17 16 15 19 19 F 1.35109 * 119.94773 * 180.30387 * 18 17 16 20 20 C 1.38461 * 120.09971 * 0.28205 * 18 17 16 21 21 C 1.38120 * 120.05082 * 359.97438 * 20 18 17 22 22 H 0.97005 * 119.99662 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46634 * 60.00220 * 10 9 7 24 24 H 1.08992 * 109.47079 * 300.00149 * 10 9 7 25 25 H 0.96999 * 120.00260 * 359.97438 * 13 11 10 26 26 H 0.96999 * 120.00186 * 359.97438 * 14 13 11 27 27 H 1.08004 * 120.03079 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.97954 * 179.72915 * 17 16 15 29 29 H 1.08003 * 119.97557 * 180.02562 * 20 18 17 30 30 H 1.07998 * 120.02286 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2326 0.0008 12 8 6.3441 -2.2963 0.0014 13 7 6.0457 -4.4948 0.0011 14 7 7.4275 -4.7253 0.0016 15 6 7.9179 -6.0347 0.0014 16 6 7.0359 -7.1075 -0.0050 17 6 7.5225 -8.4002 0.0006 18 6 8.8885 -8.6268 0.0009 19 9 9.3622 -9.8921 0.0002 20 6 9.7696 -7.5587 0.0015 21 6 9.2875 -6.2644 0.0013 22 1 -0.4850 0.8401 -0.0004 23 1 3.6440 -3.4313 -0.8893 24 1 3.6433 -3.4318 0.8906 25 1 5.4290 -5.2435 0.0018 26 1 8.0441 -3.9765 0.0013 27 1 5.9704 -6.9312 -0.0094 28 1 6.8370 -9.2348 0.0001 29 1 10.8347 -7.7378 0.0014 30 1 9.9752 -5.4317 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042039895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:23 Heat of formation + Delta-G solvation = -39.231277 kcal Electronic energy + Delta-G solvation = -16812.683515 eV Core-core repulsion = 13649.167626 eV Total energy + Delta-G solvation = -3163.515888 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.68811 -41.14272 -39.90413 -36.82863 -34.66798 -33.40466 -32.07745 -30.80680 -28.37588 -27.79888 -24.40902 -23.06394 -22.18021 -20.14210 -19.23100 -18.66149 -18.32548 -17.19354 -17.10057 -16.72502 -16.63411 -16.42354 -15.96802 -15.33205 -15.01492 -14.81841 -14.58416 -14.41994 -13.97564 -13.74665 -13.71529 -13.34386 -13.02063 -12.71070 -12.39754 -11.92901 -11.87684 -11.29255 -11.16762 -10.54703 -10.32782 -10.10346 -9.00413 -8.51115 -8.26211 -6.22148 0.26945 0.31313 0.60809 1.16266 1.32363 1.42040 1.49020 1.67365 2.24715 2.63532 2.68156 2.87549 3.05483 3.46023 3.70670 3.77358 3.94317 4.20116 4.28717 4.41928 4.44976 4.67191 4.94247 5.17463 5.23934 5.25980 5.50722 5.71385 5.90238 6.13205 6.18718 6.60598 6.94159 7.18404 8.61091 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.060070 B = 0.003056 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.010593 B = 9159.520096 C = 9610.386165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.066 0.934 9 S -0.167 6.167 10 C -0.104 4.104 11 C 0.536 3.464 12 O -0.558 6.558 13 N -0.509 5.509 14 N -0.542 5.542 15 C 0.202 3.798 16 C -0.180 4.180 17 C -0.099 4.099 18 C 0.016 3.984 19 F -0.155 7.155 20 C -0.097 4.097 21 C -0.162 4.162 22 H 0.277 0.723 23 H 0.123 0.877 24 H 0.124 0.876 25 H 0.437 0.563 26 H 0.434 0.566 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.309 -16.546 0.098 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.159 1.159 7 C -0.676 4.676 8 H 0.085 0.915 9 S 0.059 5.941 10 C -0.256 4.256 11 C 0.322 3.678 12 O -0.435 6.435 13 N -0.257 5.257 14 N -0.269 5.269 15 C 0.099 3.901 16 C -0.203 4.203 17 C -0.118 4.118 18 C -0.005 4.005 19 F -0.134 7.134 20 C -0.116 4.116 21 C -0.185 4.185 22 H 0.086 0.914 23 H 0.141 0.859 24 H 0.142 0.858 25 H 0.281 0.719 26 H 0.277 0.723 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.211 -14.930 0.102 23.549 hybrid contribution -1.189 -0.607 -0.044 1.336 sum 17.022 -15.537 0.059 23.047 Atomic orbital electron populations 1.70015 1.07330 1.29021 1.49119 1.25549 0.95238 1.02258 0.92967 0.85889 0.80737 0.79713 0.80177 1.18755 1.18584 1.15868 1.22465 0.90174 0.96793 1.58192 0.91550 1.84769 1.06476 1.05230 1.97625 1.23141 0.93553 1.00385 1.08488 1.20106 0.90115 0.81464 0.76116 1.90717 1.58938 1.43136 1.50703 1.44599 0.96827 1.08256 1.76031 1.43459 0.94217 1.05861 1.83317 1.18007 0.93413 0.82657 0.96072 1.20537 1.00020 0.90754 1.08960 1.21072 0.93799 0.98020 0.98940 1.17749 0.93024 0.79089 1.10652 1.91452 1.89133 1.38006 1.94809 1.21078 1.00943 0.90635 0.98972 1.20531 0.92494 0.97767 1.07740 0.91384 0.85874 0.85833 0.71857 0.72274 0.83899 0.83035 0.82653 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.55 13.97 21.65 0.30 -54.25 16 2 C 0.05 2.58 5.50 84.86 0.47 3.05 16 3 Si 0.91 43.59 27.74 68.60 1.90 45.49 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.23 -11.11 6.74 99.48 0.67 -10.44 16 7 C -0.53 -29.41 10.04 67.96 0.68 -28.73 16 8 H 0.07 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.17 -7.92 18.55 -56.49 -1.05 -8.97 16 10 C -0.10 -3.45 6.16 71.24 0.44 -3.02 16 11 C 0.54 16.38 7.96 87.66 0.70 17.08 16 12 O -0.56 -21.53 15.70 -3.03 -0.05 -21.58 16 13 N -0.51 -10.89 6.22 -173.53 -1.08 -11.97 16 14 N -0.54 -10.84 6.46 -51.32 -0.33 -11.17 16 15 C 0.20 3.42 6.72 38.17 0.26 3.67 16 16 C -0.18 -2.72 9.48 22.40 0.21 -2.51 16 17 C -0.10 -1.50 10.02 22.30 0.22 -1.27 16 18 C 0.02 0.27 7.30 22.38 0.16 0.44 16 19 F -0.15 -3.00 17.27 44.97 0.78 -2.23 16 20 C -0.10 -1.40 10.02 22.29 0.22 -1.17 16 21 C -0.16 -2.34 9.89 22.39 0.22 -2.12 16 22 H 0.28 15.26 8.31 -92.70 -0.77 14.49 16 23 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 24 H 0.12 3.66 8.14 -2.40 -0.02 3.64 16 25 H 0.44 6.51 6.61 -213.32 -1.41 5.10 16 26 H 0.43 9.06 8.01 -213.32 -1.71 7.35 16 27 H 0.14 1.62 6.20 -2.91 -0.02 1.60 16 28 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -69.98 287.55 2.11 -67.87 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -1.96 Total: 11.37 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.59 Total: -14.57 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.11 Total: -77.39 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.49 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.05 Total: -8.97 kcal Total: -69.98 2.11 -67.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042039895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.638 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds