Wall clock time and date at job start Mon Mar 30 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46503 * 120.00413 * 2 1 4 4 C 1.50703 * 109.46824 * 269.99814 * 3 2 1 5 5 H 1.07998 * 119.99843 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99783 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99687 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00010 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47013 * 90.00254 * 8 6 4 10 10 H 1.48504 * 109.46944 * 210.00080 * 8 6 4 11 11 H 1.48500 * 109.47314 * 329.99945 * 8 6 4 12 12 C 1.34783 * 120.00138 * 179.97438 * 2 1 3 13 13 S 1.71198 * 120.00090 * 179.97438 * 12 2 1 14 14 N 1.34779 * 119.99768 * 0.02562 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.33393 * 125.20065 * 89.99565 * 16 15 14 18 18 C 1.38425 * 114.92007 * 179.97438 * 17 16 15 19 19 C 1.33389 * 114.92135 * 0.02562 * 18 17 16 20 20 S 1.75882 * 125.20483 * 269.69419 * 16 15 14 21 21 H 1.08999 * 109.47474 * 270.00178 * 1 2 3 22 22 H 1.09007 * 109.47434 * 30.00260 * 1 2 3 23 23 H 1.09004 * 109.47368 * 150.00397 * 1 2 3 24 24 H 1.09003 * 109.46641 * 29.99581 * 3 2 1 25 25 H 1.08997 * 109.47376 * 149.99912 * 3 2 1 26 26 H 0.97000 * 119.99596 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 28 28 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 29 29 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 30 30 H 1.08005 * 122.54147 * 359.96383 * 17 16 15 31 31 H 1.07995 * 122.53675 * 180.02562 * 18 17 16 32 32 H 1.07999 * 125.20519 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3449 3.2576 -2.9128 8 14 3.7319 3.9298 -0.2530 9 1 5.1052 3.5091 0.1240 10 1 3.7468 5.3564 -0.6652 11 1 2.8251 3.7603 0.9107 12 6 2.1389 -1.1672 0.0005 13 16 3.8508 -1.1672 -0.0001 14 7 1.4649 -2.3345 0.0005 15 6 2.1974 -3.6032 0.0017 16 6 1.2181 -4.7486 0.0020 17 6 0.7188 -5.3337 -1.0878 18 6 -0.1660 -6.3692 -0.8404 19 6 -0.3856 -6.6246 0.4503 20 16 0.5645 -5.5233 1.4394 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1383 0.5138 26 1 3.8212 4.0838 -3.0901 27 1 0.4949 -2.3344 0.0005 28 1 2.8235 -3.6605 0.8921 29 1 2.8247 -3.6613 -0.8879 30 1 0.9845 -5.0230 -2.0874 31 1 -0.6423 -6.9279 -1.6323 32 1 -1.0422 -7.3934 0.8299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047583380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:29 Heat of formation + Delta-G solvation = 64.158710 kcal Electronic energy + Delta-G solvation = -15783.962765 eV Core-core repulsion = 13191.143379 eV Total energy + Delta-G solvation = -2592.819386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.07773 -37.99419 -35.41673 -32.56279 -30.79206 -28.71199 -27.38894 -25.82445 -23.34706 -22.59353 -21.04510 -19.52531 -18.12433 -17.09553 -16.99321 -16.52630 -15.68316 -14.90842 -14.58558 -14.22871 -13.99264 -13.53948 -13.17716 -12.96389 -12.61722 -12.43079 -12.39659 -12.10102 -11.68120 -11.39192 -11.03721 -10.78092 -10.55187 -10.33131 -10.09438 -9.53828 -9.09661 -8.75170 -8.56634 -8.28131 -7.01708 -6.55154 -6.06305 -4.05235 0.62030 1.33824 1.72465 2.10518 2.37542 2.72305 3.30347 3.35657 3.40327 3.44678 3.82134 4.43011 4.44023 4.77900 5.08794 5.11138 5.26559 5.28796 5.43375 5.46743 5.69011 5.80709 5.86665 5.98768 6.19586 6.24125 6.50912 6.77890 7.14186 7.40299 7.55879 7.81895 8.45971 8.93370 9.51825 11.06961 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038317 B = 0.004224 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.575766 B = 6627.556114 C = 6687.609651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.073 0.927 6 C 0.079 3.921 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.563 3.437 13 S -0.654 6.654 14 N -0.701 5.701 15 C 0.204 3.796 16 C -0.201 4.201 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.211 4.211 20 S 0.112 5.888 21 H 0.060 0.940 22 H 0.093 0.907 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.392 0.608 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.622 -17.657 7.823 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.247 5.247 3 C 0.089 3.911 4 C -0.559 4.559 5 H 0.091 0.909 6 C -0.124 4.124 7 N -0.533 5.533 8 Si 0.702 3.298 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.203 3.797 13 S -0.525 6.525 14 N -0.336 5.336 15 C 0.079 3.921 16 C -0.319 4.319 17 C -0.147 4.147 18 C -0.168 4.168 19 C -0.347 4.347 20 S 0.376 5.624 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.230 0.770 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.268 -17.251 9.287 22.120 hybrid contribution -1.332 0.305 -1.056 1.728 sum -11.600 -16.946 8.230 22.124 Atomic orbital electron populations 1.21962 0.80678 1.03901 1.01651 1.47294 1.05982 1.06018 1.65428 1.20285 0.93763 0.77054 1.00031 1.21013 1.37602 1.07104 0.90212 0.90858 1.24729 0.94880 0.97236 0.95537 1.69881 1.41297 1.23517 1.18649 0.86870 0.80652 0.79557 0.82735 1.19385 1.21225 1.19257 1.22065 0.95272 0.81061 0.81256 1.93178 0.90105 1.94579 1.74679 1.44987 1.09109 1.03955 1.75565 1.19835 0.90417 0.76318 1.05574 1.24634 1.06578 1.04552 0.96090 1.20317 0.97969 0.96685 0.99720 1.20212 1.00611 0.99472 0.96529 1.25732 1.06423 1.05503 0.97031 1.84446 1.39994 1.28592 1.09363 0.92166 0.88820 0.92149 0.94766 0.91206 0.92511 0.77036 0.88971 0.88003 0.83781 0.84106 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.20 59.84 0.61 1.51 16 2 N -0.54 -10.61 2.86 -184.99 -0.53 -11.14 16 3 C 0.21 4.94 3.99 -5.19 -0.02 4.92 16 4 C -0.52 -14.63 9.94 -34.44 -0.34 -14.97 16 5 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 8 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.56 11.00 7.70 -86.91 -0.67 10.33 16 13 S -0.65 -15.78 27.17 -107.50 -2.92 -18.70 16 14 N -0.70 -10.20 5.41 -63.21 -0.34 -10.54 16 15 C 0.20 2.69 5.62 -5.19 -0.03 2.66 16 16 C -0.20 -2.12 5.88 -36.00 -0.21 -2.33 16 17 C -0.11 -1.11 10.05 -41.21 -0.41 -1.52 16 18 C -0.14 -1.13 10.18 -41.21 -0.42 -1.55 16 19 C -0.21 -1.65 11.23 29.04 0.33 -1.33 16 20 S 0.11 1.03 23.33 -107.50 -2.51 -1.48 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 23 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 24 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 25 H 0.07 1.80 6.01 -51.93 -0.31 1.49 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.39 4.71 6.19 -40.82 -0.25 4.46 16 28 H 0.09 1.28 7.99 -51.93 -0.42 0.87 16 29 H 0.10 1.47 7.99 -51.93 -0.41 1.05 16 30 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -34.45 299.63 -10.74 -45.19 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.80 Total: 2.12 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.27 Total: -0.09 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.10 Total: -48.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: -14.75 SS G_CDS: -5.43 Total: -20.18 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.45 -10.74 -45.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047583380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.346 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds