Wall clock time and date at job start Mon Mar 30 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46503 * 120.00413 * 2 1 4 4 C 1.50703 * 109.46824 * 269.99814 * 3 2 1 5 5 H 1.07998 * 119.99843 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99783 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99687 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00010 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47013 * 90.00254 * 8 6 4 10 10 H 1.48504 * 109.46944 * 210.00080 * 8 6 4 11 11 H 1.48500 * 109.47314 * 329.99945 * 8 6 4 12 12 C 1.34783 * 120.00138 * 179.97438 * 2 1 3 13 13 S 1.71198 * 120.00090 * 179.97438 * 12 2 1 14 14 N 1.34779 * 119.99768 * 0.02562 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.33393 * 125.20065 * 89.99565 * 16 15 14 18 18 C 1.38425 * 114.92007 * 179.97438 * 17 16 15 19 19 C 1.33389 * 114.92135 * 0.02562 * 18 17 16 20 20 S 1.75882 * 125.20483 * 269.69419 * 16 15 14 21 21 H 1.08999 * 109.47474 * 270.00178 * 1 2 3 22 22 H 1.09007 * 109.47434 * 30.00260 * 1 2 3 23 23 H 1.09004 * 109.47368 * 150.00397 * 1 2 3 24 24 H 1.09003 * 109.46641 * 29.99581 * 3 2 1 25 25 H 1.08997 * 109.47376 * 149.99912 * 3 2 1 26 26 H 0.97000 * 119.99596 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 28 28 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 29 29 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 30 30 H 1.08005 * 122.54147 * 359.96383 * 17 16 15 31 31 H 1.07995 * 122.53675 * 180.02562 * 18 17 16 32 32 H 1.07999 * 125.20519 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3449 3.2576 -2.9128 8 14 3.7319 3.9298 -0.2530 9 1 5.1052 3.5091 0.1240 10 1 3.7468 5.3564 -0.6652 11 1 2.8251 3.7603 0.9107 12 6 2.1389 -1.1672 0.0005 13 16 3.8508 -1.1672 -0.0001 14 7 1.4649 -2.3345 0.0005 15 6 2.1974 -3.6032 0.0017 16 6 1.2181 -4.7486 0.0020 17 6 0.7188 -5.3337 -1.0878 18 6 -0.1660 -6.3692 -0.8404 19 6 -0.3856 -6.6246 0.4503 20 16 0.5645 -5.5233 1.4394 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1383 0.5138 26 1 3.8212 4.0838 -3.0901 27 1 0.4949 -2.3344 0.0005 28 1 2.8235 -3.6605 0.8921 29 1 2.8247 -3.6613 -0.8879 30 1 0.9845 -5.0230 -2.0874 31 1 -0.6423 -6.9279 -1.6323 32 1 -1.0422 -7.3934 0.8299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047583380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:29 Heat of formation + Delta-G solvation = 41.894568 kcal Electronic energy + Delta-G solvation = -15784.928210 eV Core-core repulsion = 13191.143379 eV Total energy + Delta-G solvation = -2593.784831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47497 -38.88850 -36.78345 -34.65295 -31.90810 -30.38929 -28.68793 -26.98456 -24.72015 -23.87946 -22.62676 -20.28089 -19.34910 -19.13858 -18.49226 -17.64245 -16.62588 -16.36080 -16.16218 -15.69333 -15.46923 -14.89297 -14.46738 -14.01618 -13.74991 -13.70512 -13.42600 -13.34227 -13.16280 -12.87737 -12.51919 -12.36552 -12.09090 -11.89384 -11.71807 -11.65630 -10.77753 -9.83760 -9.77786 -9.44521 -8.85651 -8.45495 -8.28589 -6.32268 -0.12559 0.50324 0.61039 1.03821 1.06705 1.35790 1.45036 1.47722 1.61372 1.91405 2.35950 2.50389 3.08246 3.52768 3.98649 4.15264 4.22516 4.37522 4.47681 4.59504 4.67577 4.71685 4.72602 4.91892 5.03119 5.14917 5.29723 5.43330 5.49994 5.64488 5.75712 6.26001 6.39091 6.65675 7.28736 8.88333 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038317 B = 0.004224 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.575766 B = 6627.556114 C = 6687.609651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.546 5.546 3 C 0.219 3.781 4 C -0.518 4.518 5 H 0.028 0.972 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.234 1.234 12 C 0.582 3.418 13 S -0.755 6.755 14 N -0.670 5.670 15 C 0.210 3.790 16 C -0.224 4.224 17 C -0.108 4.108 18 C -0.148 4.148 19 C -0.195 4.195 20 S 0.112 5.888 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.411 0.589 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -18.834 9.634 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.251 5.251 3 C 0.097 3.903 4 C -0.557 4.557 5 H 0.046 0.954 6 C -0.180 4.180 7 N -0.586 5.586 8 Si 0.766 3.234 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.157 1.157 12 C 0.218 3.782 13 S -0.629 6.629 14 N -0.304 5.304 15 C 0.085 3.915 16 C -0.342 4.342 17 C -0.141 4.141 18 C -0.177 4.177 19 C -0.331 4.331 20 S 0.376 5.624 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.252 0.748 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.124 -18.481 11.114 25.245 hybrid contribution -0.634 0.486 -1.689 1.868 sum -13.758 -17.995 9.426 24.534 Atomic orbital electron populations 1.22350 0.76784 1.05179 1.04470 1.47227 1.08230 1.04672 1.64971 1.19918 0.94136 0.79320 0.96929 1.21181 1.36818 1.06291 0.91386 0.95374 1.25663 0.95123 0.98935 0.98257 1.70033 1.42860 1.24456 1.21232 0.85800 0.79805 0.77645 0.80196 1.20618 1.20360 1.15701 1.21489 0.93406 0.82509 0.80833 1.93365 0.95245 1.95354 1.78889 1.44946 1.09960 1.02950 1.72586 1.19722 0.90995 0.76474 1.04342 1.24292 1.07715 1.04685 0.97498 1.20518 0.97477 0.96602 0.99523 1.20424 1.00529 0.99306 0.97474 1.26124 1.05429 1.04964 0.96551 1.84472 1.40163 1.28948 1.08789 0.88377 0.89091 0.89522 0.92089 0.93084 0.92399 0.74831 0.89881 0.89716 0.83695 0.81816 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.38 10.20 127.77 1.30 2.69 16 2 N -0.55 -20.62 2.86 -739.19 -2.11 -22.74 16 3 C 0.22 10.18 3.99 85.63 0.34 10.52 16 4 C -0.52 -29.63 9.94 25.60 0.25 -29.37 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 6 C 0.02 1.07 5.47 84.66 0.46 1.54 16 7 N -0.95 -59.86 13.96 21.45 0.30 -59.57 16 8 Si 0.94 44.51 27.47 68.60 1.88 46.39 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.23 -9.69 6.54 99.48 0.65 -9.04 16 12 C 0.58 22.54 7.70 179.05 1.38 23.91 16 13 S -0.76 -37.81 27.17 -56.49 -1.53 -39.34 16 14 N -0.67 -18.65 5.41 -353.90 -1.92 -20.56 16 15 C 0.21 5.47 5.62 85.63 0.48 5.96 16 16 C -0.22 -4.40 5.88 24.59 0.14 -4.26 16 17 C -0.11 -1.87 10.05 21.22 0.21 -1.65 16 18 C -0.15 -1.94 10.18 21.22 0.22 -1.72 16 19 C -0.19 -2.34 11.23 66.72 0.75 -1.59 16 20 S 0.11 1.80 23.33 -56.49 -1.32 0.48 16 21 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.09 2.37 8.07 -2.38 -0.02 2.35 16 23 H 0.09 1.67 6.36 -2.38 -0.02 1.65 16 24 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 25 H 0.05 2.62 6.01 -2.39 -0.01 2.60 16 26 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.41 8.70 6.19 -92.71 -0.57 8.12 16 28 H 0.08 2.36 7.99 -2.39 -0.02 2.34 16 29 H 0.08 2.54 7.99 -2.39 -0.02 2.52 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -79.06 299.63 1.35 -77.70 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.50 Total: 11.62 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.54 Total: 6.02 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.73 Total: -102.86 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: -36.01 SS G_CDS: -2.85 Total: -38.87 kcal Total: -79.06 1.35 -77.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047583380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.599 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds