Wall clock time and date at job start Mon Mar 30 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47298 * 2 1 4 4 C 1.33274 * 119.99922 * 81.61729 * 3 2 1 5 5 H 1.07998 * 120.00405 * 173.80876 * 4 3 2 6 6 C 1.46794 * 120.00374 * 353.81192 * 4 3 2 7 7 N 1.29321 * 119.99599 * 8.21269 * 6 4 3 8 8 Si 1.86797 * 120.00355 * 188.21055 * 6 4 3 9 9 H 1.48501 * 109.46806 * 60.00178 * 8 6 4 10 10 H 1.48499 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47220 * 300.00076 * 8 6 4 12 12 C 1.34777 * 119.99917 * 261.62535 * 3 2 1 13 13 O 1.21565 * 119.99766 * 184.85462 * 12 3 2 14 14 C 1.46986 * 120.00215 * 4.84953 * 12 3 2 15 15 C 1.36219 * 123.48872 * 207.89891 * 14 12 3 16 16 S 1.70453 * 110.79088 * 179.69881 * 15 14 12 17 17 C 1.75497 * 92.46215 * 0.25919 * 16 15 14 18 18 N 1.48023 * 124.68476 * 180.02562 * 17 16 15 19 19 O 1.31708 * 119.99478 * 180.02562 * 18 17 16 20 20 O 1.31696 * 120.00445 * 0.02562 * 18 17 16 21 21 C 1.32718 * 110.62342 * 0.02562 * 17 16 15 22 22 H 1.09000 * 109.46949 * 170.73769 * 1 2 3 23 23 H 1.08995 * 109.47292 * 290.74380 * 1 2 3 24 24 H 1.09005 * 109.46827 * 50.74493 * 1 2 3 25 25 H 1.08999 * 109.47036 * 240.00081 * 2 1 3 26 26 H 1.08996 * 109.46957 * 120.00086 * 2 1 3 27 27 H 0.96996 * 119.99718 * 180.02562 * 7 6 4 28 28 H 1.08002 * 124.60775 * 359.95312 * 15 14 12 29 29 H 1.07995 * 123.44899 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0819 2.0656 1.1419 5 1 2.5341 3.0462 1.1594 6 6 1.5374 1.4865 2.3760 7 7 1.1413 0.2555 2.3926 8 14 1.4166 2.5275 3.9222 9 1 0.5451 3.7013 3.6618 10 1 0.8365 1.7153 5.0218 11 1 2.7715 2.9937 4.3122 12 6 2.4033 1.9599 -1.1548 13 8 2.8909 3.0734 -1.1436 14 6 2.2338 1.2445 -2.4276 15 6 3.0292 1.4462 -3.5148 16 16 2.5517 0.4438 -4.8081 17 6 1.2439 -0.2640 -3.8760 18 7 0.3143 -1.2994 -4.3806 19 8 -0.6375 -1.7669 -3.5994 20 8 0.4387 -1.7532 -5.6106 21 6 1.2038 0.2575 -2.6562 22 1 -0.3633 -1.0143 -0.1654 23 1 -0.3633 0.3640 0.9610 24 1 -0.3633 0.6503 -0.7958 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.7811 -0.1270 3.2079 28 1 3.8533 2.1433 -3.5511 29 1 0.4789 -0.0305 -1.9093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426465.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:14 Heat of formation + Delta-G solvation = 66.112155 kcal Electronic energy + Delta-G solvation = -18560.230098 eV Core-core repulsion = 15388.909454 eV Total energy + Delta-G solvation = -3171.320644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77361 -38.72921 -36.64142 -35.47714 -34.26590 -32.31451 -30.66901 -30.07389 -26.43819 -25.96074 -23.54184 -22.34733 -20.93323 -19.41435 -18.77595 -17.75955 -17.23509 -16.46053 -16.01102 -15.81101 -15.08562 -14.37734 -14.14045 -13.86476 -13.48590 -12.93672 -12.59503 -12.36218 -11.84337 -11.69294 -11.34959 -11.29232 -11.17083 -11.16561 -10.96727 -10.63530 -10.59197 -10.41077 -10.26943 -9.48355 -9.20511 -8.73993 -8.47335 -8.29715 -6.71093 -3.89607 -0.63023 0.55777 0.93251 1.37307 1.73008 2.00039 2.97334 3.02474 3.05973 3.82356 3.88450 4.55811 4.68998 4.87081 4.90432 5.25752 5.44165 5.68246 5.84067 5.93815 6.03367 6.25443 6.31628 6.52641 6.78161 6.83063 7.26193 7.30933 7.70490 8.19384 8.85624 9.10563 9.80201 10.11981 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.006094 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.256749 B = 4593.612286 C = 5445.530285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.085 3.915 3 N -0.387 5.387 4 C -0.325 4.325 5 H 0.116 0.884 6 C 0.037 3.963 7 N -0.828 5.828 8 Si 0.940 3.060 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.445 3.555 13 O -0.599 6.599 14 C -0.113 4.113 15 C -0.179 4.179 16 S 0.269 5.731 17 C -0.162 4.162 18 N 0.022 4.978 19 O -0.165 6.165 20 O -0.185 6.185 21 C -0.021 4.021 22 H 0.051 0.949 23 H 0.091 0.909 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.137 0.863 27 H 0.281 0.719 28 H 0.191 0.809 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -2.533 -6.144 6.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.038 4.038 3 N -0.099 5.099 4 C -0.455 4.455 5 H 0.134 0.866 6 C -0.174 4.174 7 N -0.464 5.464 8 Si 0.765 3.235 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.192 1.192 12 C 0.236 3.764 13 O -0.489 6.489 14 C -0.129 4.129 15 C -0.320 4.320 16 S 0.535 5.465 17 C -0.366 4.366 18 N 0.498 4.502 19 O -0.359 6.359 20 O -0.374 6.374 21 C -0.057 4.057 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.154 0.846 27 H 0.094 0.906 28 H 0.208 0.792 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.847 -1.981 -7.250 7.740 hybrid contribution -0.978 0.150 1.996 2.227 sum 0.869 -1.831 -5.254 5.632 Atomic orbital electron populations 1.22331 0.96530 0.99996 1.02884 1.22458 0.94823 0.83770 1.02735 1.42720 1.49720 1.11345 1.06070 1.20769 1.38083 1.02304 0.84334 0.86642 1.26938 0.94842 0.95653 0.99973 1.68929 1.34932 1.13008 1.29483 0.85763 0.79550 0.79622 0.78601 1.19202 1.20477 1.19179 1.16602 0.90689 0.87354 0.81771 1.90601 1.52427 1.20247 1.85609 1.20518 0.95748 0.98481 0.98182 1.26009 1.04785 1.04492 0.96747 1.83141 1.20617 1.30936 1.11795 1.25007 1.04615 1.05247 1.01703 1.49492 0.99856 0.98866 1.01960 1.96304 1.24095 1.61744 1.53744 1.96272 1.80065 1.63403 0.97683 1.23046 0.97591 0.90540 0.94565 0.92968 0.89043 0.94679 0.94449 0.84569 0.90553 0.79156 0.78371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.09 37.16 0.30 -2.79 15 2 C 0.09 1.77 4.87 -4.04 -0.02 1.75 15 3 N -0.39 -9.21 2.55 -114.63 -0.29 -9.50 15 4 C -0.32 -8.19 9.70 -13.47 -0.13 -8.32 15 5 H 0.12 3.10 7.22 -52.49 -0.38 2.72 15 6 C 0.04 0.85 5.29 -15.15 -0.08 0.77 15 7 N -0.83 -18.24 7.59 56.00 0.42 -17.82 15 8 Si 0.94 18.19 29.65 -169.99 -5.04 13.15 15 9 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 10 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 11 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 12 C 0.45 10.52 7.46 -12.72 -0.09 10.43 15 13 O -0.60 -16.05 16.43 5.31 0.09 -15.96 15 14 C -0.11 -2.14 5.41 -104.62 -0.57 -2.71 15 15 C -0.18 -2.77 10.64 30.01 0.32 -2.45 15 16 S 0.27 3.55 22.81 -107.50 -2.45 1.10 15 17 C -0.16 -2.68 7.49 -11.51 -0.09 -2.76 15 18 N 0.02 0.40 4.98 33.25 0.17 0.56 15 19 O -0.17 -3.05 19.64 -31.57 -0.62 -3.67 15 20 O -0.19 -3.26 19.78 -31.56 -0.62 -3.88 15 21 C -0.02 -0.37 7.38 -39.01 -0.29 -0.66 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.09 1.92 5.97 -51.93 -0.31 1.61 15 24 H 0.03 0.66 6.51 -51.93 -0.34 0.33 15 25 H 0.04 0.72 5.06 -51.93 -0.26 0.45 15 26 H 0.14 3.03 5.58 -51.93 -0.29 2.74 15 27 H 0.28 5.78 8.26 -40.82 -0.34 5.45 15 28 H 0.19 2.65 8.06 -52.49 -0.42 2.23 15 29 H 0.20 3.56 2.97 -52.49 -0.16 3.40 15 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -27.16 268.84 -6.66 -33.82 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -1.71 Total: 4.88 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.65 Total: -6.74 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.30 Total: -26.75 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.16 Total: -23.52 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.04 Total: 13.15 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.45 Total: 1.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.16 -6.66 -33.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426465.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.934 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds