Wall clock time and date at job start Mon Mar 30 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47298 * 2 1 4 4 C 1.33274 * 119.99922 * 81.61729 * 3 2 1 5 5 H 1.07998 * 120.00405 * 173.80876 * 4 3 2 6 6 C 1.46794 * 120.00374 * 353.81192 * 4 3 2 7 7 N 1.29321 * 119.99599 * 8.21269 * 6 4 3 8 8 Si 1.86797 * 120.00355 * 188.21055 * 6 4 3 9 9 H 1.48501 * 109.46806 * 60.00178 * 8 6 4 10 10 H 1.48499 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47220 * 300.00076 * 8 6 4 12 12 C 1.34777 * 119.99917 * 261.62535 * 3 2 1 13 13 O 1.21565 * 119.99766 * 184.85462 * 12 3 2 14 14 C 1.46986 * 120.00215 * 4.84953 * 12 3 2 15 15 C 1.36219 * 123.48872 * 207.89891 * 14 12 3 16 16 S 1.70453 * 110.79088 * 179.69881 * 15 14 12 17 17 C 1.75497 * 92.46215 * 0.25919 * 16 15 14 18 18 N 1.48023 * 124.68476 * 180.02562 * 17 16 15 19 19 O 1.31708 * 119.99478 * 180.02562 * 18 17 16 20 20 O 1.31696 * 120.00445 * 0.02562 * 18 17 16 21 21 C 1.32718 * 110.62342 * 0.02562 * 17 16 15 22 22 H 1.09000 * 109.46949 * 170.73769 * 1 2 3 23 23 H 1.08995 * 109.47292 * 290.74380 * 1 2 3 24 24 H 1.09005 * 109.46827 * 50.74493 * 1 2 3 25 25 H 1.08999 * 109.47036 * 240.00081 * 2 1 3 26 26 H 1.08996 * 109.46957 * 120.00086 * 2 1 3 27 27 H 0.96996 * 119.99718 * 180.02562 * 7 6 4 28 28 H 1.08002 * 124.60775 * 359.95312 * 15 14 12 29 29 H 1.07995 * 123.44899 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0819 2.0656 1.1419 5 1 2.5341 3.0462 1.1594 6 6 1.5374 1.4865 2.3760 7 7 1.1413 0.2555 2.3926 8 14 1.4166 2.5275 3.9222 9 1 0.5451 3.7013 3.6618 10 1 0.8365 1.7153 5.0218 11 1 2.7715 2.9937 4.3122 12 6 2.4033 1.9599 -1.1548 13 8 2.8909 3.0734 -1.1436 14 6 2.2338 1.2445 -2.4276 15 6 3.0292 1.4462 -3.5148 16 16 2.5517 0.4438 -4.8081 17 6 1.2439 -0.2640 -3.8760 18 7 0.3143 -1.2994 -4.3806 19 8 -0.6375 -1.7669 -3.5994 20 8 0.4387 -1.7532 -5.6106 21 6 1.2038 0.2575 -2.6562 22 1 -0.3633 -1.0143 -0.1654 23 1 -0.3633 0.3640 0.9610 24 1 -0.3633 0.6503 -0.7958 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.7811 -0.1270 3.2079 28 1 3.8533 2.1433 -3.5511 29 1 0.4789 -0.0305 -1.9093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426465.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:14 Heat of formation + Delta-G solvation = 50.553721 kcal Electronic energy + Delta-G solvation = -18560.904762 eV Core-core repulsion = 15388.909454 eV Total energy + Delta-G solvation = -3171.995308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34172 -40.16536 -38.12061 -37.27641 -35.63973 -34.07755 -32.07423 -31.69825 -27.85320 -27.58784 -25.11826 -23.97171 -22.38334 -20.83371 -20.28417 -19.11354 -19.01108 -17.97375 -17.38568 -17.24339 -16.76478 -16.01905 -15.76659 -15.43241 -15.02646 -14.35138 -14.11116 -13.94815 -13.41740 -13.30637 -12.89617 -12.80268 -12.70562 -12.55164 -12.36585 -12.13534 -12.07562 -12.02591 -11.92463 -10.98503 -10.77301 -10.55150 -10.06905 -9.73899 -8.42972 -5.76850 -1.99440 -0.71382 -0.40793 0.07120 0.42590 0.57532 1.39870 1.43394 1.49978 2.17923 2.22779 2.95012 3.00972 3.36470 3.55474 3.89314 4.00967 4.23389 4.31223 4.56277 4.61997 4.68334 4.71589 4.99537 5.10318 5.39405 5.53372 5.66227 5.88234 6.41418 7.07031 7.35388 8.03180 8.38033 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.006094 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.256749 B = 4593.612286 C = 5445.530285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.090 3.910 3 N -0.398 5.398 4 C -0.382 4.382 5 H 0.083 0.917 6 C 0.020 3.980 7 N -0.829 5.829 8 Si 0.996 3.004 9 H -0.274 1.274 10 H -0.260 1.260 11 H -0.271 1.271 12 C 0.436 3.564 13 O -0.645 6.645 14 C -0.148 4.148 15 C -0.158 4.158 16 S 0.402 5.598 17 C -0.182 4.182 18 N 0.024 4.976 19 O -0.201 6.201 20 O -0.168 6.168 21 C -0.028 4.028 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.290 0.710 28 H 0.209 0.791 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -3.462 -7.974 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 N -0.109 5.109 4 C -0.511 4.511 5 H 0.101 0.899 6 C -0.192 4.192 7 N -0.463 5.463 8 Si 0.818 3.182 9 H -0.199 1.199 10 H -0.184 1.184 11 H -0.196 1.196 12 C 0.227 3.773 13 O -0.538 6.538 14 C -0.164 4.164 15 C -0.299 4.299 16 S 0.669 5.331 17 C -0.386 4.386 18 N 0.497 4.503 19 O -0.386 6.386 20 O -0.363 6.363 21 C -0.065 4.065 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.139 0.861 27 H 0.103 0.897 28 H 0.226 0.774 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.145 -2.977 -9.021 9.739 hybrid contribution -0.950 0.416 2.242 2.471 sum 1.195 -2.561 -6.779 7.344 Atomic orbital electron populations 1.22190 0.95551 1.01125 1.01732 1.22423 0.95553 0.82444 1.02806 1.42835 1.50012 1.12151 1.05875 1.20564 1.41951 1.02353 0.86273 0.89890 1.27512 0.93697 0.96653 1.01348 1.68972 1.33714 1.13211 1.30387 0.84972 0.79051 0.78221 0.75961 1.19932 1.18427 1.19569 1.17258 0.89683 0.87193 0.83176 1.90538 1.54170 1.22303 1.86776 1.20041 0.98416 1.00733 0.97255 1.26515 1.03487 1.03175 0.96709 1.82880 1.16198 1.26606 1.07446 1.25266 1.05691 1.05215 1.02447 1.49574 0.99918 0.98930 1.01841 1.96320 1.25230 1.63039 1.53977 1.96251 1.79552 1.62884 0.97626 1.22687 0.97548 0.91012 0.95277 0.90823 0.90966 0.94744 0.92772 0.86114 0.89667 0.77398 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 8.09 71.98 0.58 -5.24 15 2 C 0.09 3.83 4.87 86.38 0.42 4.25 15 3 N -0.40 -19.73 2.55 -634.87 -1.62 -21.35 15 4 C -0.38 -20.35 9.70 86.71 0.84 -19.51 15 5 H 0.08 4.82 7.22 -2.91 -0.02 4.80 15 6 C 0.02 0.91 5.29 87.30 0.46 1.37 15 7 N -0.83 -36.92 7.59 23.26 0.18 -36.74 15 8 Si 1.00 37.89 29.65 68.60 2.03 39.92 15 9 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 10 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 11 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 12 C 0.44 21.23 7.46 86.54 0.65 21.88 15 13 O -0.64 -36.02 16.43 -3.92 -0.06 -36.08 15 14 C -0.15 -5.51 5.41 -19.87 -0.11 -5.61 15 15 C -0.16 -4.39 10.64 67.35 0.72 -3.67 15 16 S 0.40 8.67 22.81 -56.49 -1.29 7.38 15 17 C -0.18 -5.51 7.49 80.75 0.61 -4.90 15 18 N 0.02 0.78 4.98 -48.71 -0.24 0.54 15 19 O -0.20 -7.22 19.64 3.50 0.07 -7.16 15 20 O -0.17 -5.34 19.78 3.52 0.07 -5.27 15 21 C -0.03 -0.97 7.38 22.69 0.17 -0.80 15 22 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.07 3.10 5.97 -2.39 -0.01 3.08 15 24 H 0.03 1.33 6.51 -2.38 -0.02 1.32 15 25 H 0.05 2.09 5.06 -2.39 -0.01 2.07 15 26 H 0.12 5.49 5.58 -2.39 -0.01 5.48 15 27 H 0.29 11.80 8.26 -92.71 -0.77 11.04 15 28 H 0.21 5.09 8.06 -2.91 -0.02 5.07 15 29 H 0.19 6.75 2.97 -2.91 -0.01 6.74 15 Total: -1.00 -61.61 268.84 4.69 -56.91 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.23 Total: 14.07 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.33 Total: -12.23 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -1.69 Total: -57.55 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: 0.07 Total: -48.51 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Atomic # 16 Polarization: 8.67 SS G_CDS: -1.29 Total: 7.38 kcal Total: -61.61 4.69 -56.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426465.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.468 kcal (2) G-P(sol) polarization free energy of solvation -61.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds