Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36931 * 120.00083 * 2 1 4 4 H 1.08009 * 119.99955 * 201.30479 * 3 2 1 5 5 C 1.38813 * 120.00240 * 21.31130 * 3 2 1 6 6 N 1.31615 * 119.99554 * 15.30810 * 5 3 2 7 7 Si 1.86801 * 119.99943 * 195.31115 * 5 3 2 8 8 H 1.48491 * 109.47131 * 89.99997 * 7 5 3 9 9 H 1.48508 * 109.46700 * 209.99734 * 7 5 3 10 10 H 1.48499 * 109.47231 * 329.99354 * 7 5 3 11 11 C 1.46504 * 119.99583 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46942 * 270.75529 * 11 2 1 13 13 C 1.38266 * 119.98543 * 359.59362 * 12 11 2 14 14 C 1.38192 * 120.01082 * 179.72410 * 13 12 11 15 15 C 1.38379 * 119.98694 * 0.54983 * 14 13 12 16 16 Cl 1.73594 * 120.01358 * 179.74949 * 15 14 13 17 17 C 1.38328 * 119.97109 * 359.72401 * 15 14 13 18 18 C 1.38216 * 119.98655 * 179.86385 * 12 11 2 19 19 N 1.48020 * 119.99683 * 359.97438 * 18 12 11 20 20 O 1.21793 * 120.00351 * 182.90221 * 19 18 12 21 21 O 1.21802 * 119.99353 * 2.90207 * 19 18 12 22 22 H 1.08989 * 109.46950 * 275.10713 * 1 2 3 23 23 H 1.09003 * 109.46727 * 35.10481 * 1 2 3 24 24 H 1.09001 * 109.47524 * 155.10224 * 1 2 3 25 25 H 0.97007 * 119.99915 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.47336 * 30.75760 * 11 2 1 27 27 H 1.09007 * 109.46886 * 150.75850 * 11 2 1 28 28 H 1.08002 * 119.99332 * 0.02562 * 13 12 11 29 29 H 1.07995 * 120.00896 * 180.24956 * 14 13 12 30 30 H 1.08003 * 120.00413 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1744 1.2178 -0.3399 5 6 1.5269 2.3469 0.4369 6 7 0.4068 2.2742 1.1241 7 14 2.2785 4.0126 0.0493 8 1 1.7435 4.5081 -1.2442 9 1 1.9349 4.9737 1.1280 10 1 3.7546 3.8800 -0.0437 11 6 2.1974 -1.2688 -0.0006 12 6 2.4323 -1.7138 1.4199 13 6 1.9784 -0.9386 2.4710 14 6 2.1885 -1.3490 3.7737 15 6 2.8633 -2.5304 4.0264 16 17 3.1333 -3.0433 5.6627 17 6 3.3222 -3.3026 2.9745 18 6 3.1064 -2.8939 1.6716 19 7 3.5968 -3.7206 0.5460 20 8 4.1440 -4.7862 0.7661 21 8 3.4531 -3.3351 -0.6004 22 1 -0.3633 0.0915 1.0235 23 1 -0.3633 0.8408 -0.5910 24 1 -0.3634 -0.9321 -0.4326 25 1 -0.0283 3.0855 1.4298 26 1 1.6143 -2.0248 -0.5265 27 1 3.1557 -1.1349 -0.5026 28 1 1.4552 -0.0146 2.2737 29 1 1.8303 -0.7455 4.5946 30 1 3.8486 -4.2250 3.1710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050444090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = 31.892601 kcal Electronic energy + Delta-G solvation = -18514.857816 eV Core-core repulsion = 15340.009594 eV Total energy + Delta-G solvation = -3174.848221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.31984 -40.66561 -38.14920 -37.62796 -37.20888 -33.89969 -33.05741 -31.84731 -28.47337 -27.87179 -26.99055 -24.27129 -23.40860 -22.32313 -20.18504 -19.69821 -18.83093 -18.61602 -17.55852 -17.05664 -16.54082 -15.94317 -15.59010 -15.33072 -15.07762 -14.73763 -13.79490 -13.61085 -13.24177 -13.04900 -12.88229 -12.75447 -12.61884 -12.51335 -12.36970 -12.24465 -12.12641 -12.03793 -11.96545 -11.78079 -10.68164 -10.61205 -9.89324 -8.93660 -7.86887 -5.35103 -1.21966 -0.19485 0.25076 0.28836 0.90932 1.47517 1.51539 1.57092 2.17476 2.48663 3.19305 3.32480 3.53149 3.64248 3.71428 3.89544 3.97602 4.49646 4.54369 4.56216 4.79320 4.82939 4.84942 5.13367 5.31562 5.35578 5.50562 5.62982 5.70880 6.26733 6.56053 7.10912 7.76803 8.21747 9.15263 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.006650 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.223477 B = 4209.773228 C = 5242.426028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.606 5.606 3 C -0.268 4.268 4 H 0.066 0.934 5 C -0.033 4.033 6 N -0.923 5.923 7 Si 0.958 3.042 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.275 1.275 11 C 0.180 3.820 12 C -0.031 4.031 13 C -0.091 4.091 14 C -0.051 4.051 15 C -0.044 4.044 16 Cl -0.032 7.032 17 C -0.050 4.050 18 C -0.053 4.053 19 N 0.038 4.962 20 O -0.167 6.167 21 O -0.181 6.181 22 H 0.020 0.980 23 H 0.022 0.978 24 H 0.026 0.974 25 H 0.252 0.748 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -9.320 7.322 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.328 5.328 3 C -0.397 4.397 4 H 0.083 0.917 5 C -0.229 4.229 6 N -0.569 5.569 7 Si 0.787 3.213 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.200 1.200 11 C 0.053 3.947 12 C -0.036 4.036 13 C -0.110 4.110 14 C -0.070 4.070 15 C -0.072 4.072 16 Cl -0.003 7.003 17 C -0.069 4.069 18 C -0.138 4.138 19 N 0.552 4.448 20 O -0.383 6.383 21 O -0.391 6.391 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.175 0.825 29 H 0.184 0.816 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.849 -8.826 8.009 12.254 hybrid contribution 0.349 0.847 -0.383 0.993 sum 3.198 -7.979 7.626 11.491 Atomic orbital electron populations 1.20715 0.82041 0.96268 0.98622 1.44179 1.02302 1.00947 1.85357 1.19382 0.97612 0.85985 1.36754 0.91663 1.25498 0.98379 1.00760 0.98290 1.70134 1.20341 1.27592 1.38785 0.85416 0.78222 0.80662 0.76976 1.21678 1.21950 1.20030 1.20305 0.97635 0.87834 0.88896 1.21506 0.90431 0.89687 1.02000 1.21558 0.98500 1.00598 0.90313 1.21774 0.93377 0.93741 0.98104 1.20570 1.03331 0.96388 0.86892 1.98390 1.95167 1.90392 1.16382 1.20831 0.97301 1.00852 0.87953 1.20827 1.10581 0.95925 0.86446 1.43638 0.98218 1.00559 1.02371 1.94462 1.42585 1.10118 1.91109 1.94557 1.61722 1.75829 1.06954 0.96172 0.95911 0.95545 0.93870 0.90047 0.90464 0.82482 0.81619 0.80743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.57 8.69 127.77 1.11 8.68 16 2 N -0.61 -27.81 1.73 -731.29 -1.27 -29.08 16 3 C -0.27 -13.50 9.05 84.03 0.76 -12.74 16 4 H 0.07 3.31 7.86 -2.91 -0.02 3.29 16 5 C -0.03 -1.66 5.05 84.86 0.43 -1.23 16 6 N -0.92 -48.47 10.74 21.65 0.23 -48.24 16 7 Si 0.96 42.28 29.58 68.60 2.03 44.31 16 8 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 9 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 C 0.18 7.14 4.34 85.63 0.37 7.52 16 12 C -0.03 -1.13 5.88 -19.86 -0.12 -1.24 16 13 C -0.09 -3.22 9.16 22.27 0.20 -3.02 16 14 C -0.05 -1.42 9.83 22.29 0.22 -1.20 16 15 C -0.04 -1.10 6.32 22.32 0.14 -0.96 16 16 Cl -0.03 -0.66 28.96 -2.72 -0.08 -0.74 16 17 C -0.05 -1.31 9.34 22.29 0.21 -1.10 16 18 C -0.05 -1.70 6.84 36.37 0.25 -1.46 16 19 N 0.04 1.27 4.45 -46.47 -0.21 1.07 16 20 O -0.17 -5.42 18.45 18.89 0.35 -5.07 16 21 O -0.18 -6.54 15.43 18.88 0.29 -6.24 16 22 H 0.02 0.95 6.85 -2.39 -0.02 0.94 16 23 H 0.02 1.11 7.29 -2.39 -0.02 1.09 16 24 H 0.03 1.03 7.84 -2.39 -0.02 1.01 16 25 H 0.25 13.01 8.31 -92.70 -0.77 12.23 16 26 H 0.08 3.08 7.10 -2.39 -0.02 3.06 16 27 H 0.08 3.17 7.12 -2.38 -0.02 3.15 16 28 H 0.16 6.81 5.81 -2.91 -0.02 6.79 16 29 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.18 3.82 7.61 -2.91 -0.02 3.80 16 Total: -1.00 -53.24 279.03 6.10 -47.14 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.18 Total: 3.60 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 3.58 Total: -6.74 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.24 Total: -76.25 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.64 Total: -11.32 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -53.24 6.10 -47.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050444090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.028 kcal (2) G-P(sol) polarization free energy of solvation -53.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds