Wall clock time and date at job start Mon Mar 30 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47463 * 274.71226 * 3 2 1 5 5 H 1.48498 * 109.46858 * 34.71608 * 3 2 1 6 6 H 1.48500 * 109.46947 * 154.71216 * 3 2 1 7 7 C 1.39867 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00171 * 200.02669 * 7 2 1 9 9 C 1.41138 * 120.00071 * 20.03298 * 7 2 1 10 10 C 1.40886 * 120.15424 * 22.94307 * 9 7 2 11 11 C 1.36339 * 119.83473 * 180.25190 * 10 9 7 12 12 C 1.39576 * 120.15976 * 359.49773 * 11 10 9 13 13 N 1.38857 * 119.84122 * 180.25557 * 12 11 10 14 14 S 1.65593 * 119.99872 * 133.53972 * 13 12 11 15 15 O 1.42101 * 104.27811 * 55.01267 * 14 13 12 16 16 O 1.42106 * 104.27584 * 182.86416 * 14 13 12 17 17 C 1.81400 * 104.45232 * 298.93762 * 14 13 12 18 18 C 1.52991 * 109.47472 * 181.84809 * 17 14 13 19 19 N 1.46898 * 109.47423 * 179.97438 * 18 17 14 20 20 C 1.39562 * 120.31501 * 0.23213 * 12 11 10 21 21 C 1.36343 * 120.16269 * 0.02705 * 20 12 11 22 22 H 0.97000 * 119.99489 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.08296 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.92266 * 179.77007 * 11 10 9 25 25 H 0.97008 * 119.99462 * 313.53615 * 13 12 11 26 26 H 1.09001 * 109.46722 * 301.85217 * 17 14 13 27 27 H 1.09004 * 109.46757 * 61.84453 * 17 14 13 28 28 H 1.09004 * 109.47189 * 300.00373 * 18 17 14 29 29 H 1.09004 * 109.47421 * 60.00050 * 18 17 14 30 30 H 1.00897 * 110.99903 * 56.04323 * 19 18 17 31 31 H 1.00898 * 111.00043 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.91643 * 180.02562 * 20 12 11 33 33 H 1.08003 * 120.08056 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3910 2.1039 -1.3953 5 1 1.4939 2.6217 0.7974 6 1 3.5868 1.4133 0.5981 7 6 2.0083 -1.2113 0.0005 8 1 3.0393 -1.2395 0.3209 9 6 1.3666 -2.3968 -0.4176 10 6 0.2436 -2.3323 -1.2659 11 6 -0.3744 -3.4813 -1.6617 12 6 0.1093 -4.7198 -1.2371 13 7 -0.5220 -5.8861 -1.6485 14 16 0.3753 -7.1588 -2.2117 15 8 1.3023 -7.4233 -1.1677 16 8 -0.5918 -8.1268 -2.5954 17 6 1.2298 -6.5001 -3.6700 18 6 2.0661 -7.6072 -4.3145 19 7 2.7577 -7.0739 -5.4957 20 6 1.2247 -4.7915 -0.4013 21 6 1.8496 -3.6504 0.0067 22 1 -0.4849 0.8401 0.0004 23 1 -0.1290 -1.3749 -1.5989 24 1 -1.2376 -3.4333 -2.3090 25 1 -1.4887 -5.9553 -1.6059 26 1 0.4950 -6.1352 -4.3876 27 1 1.8822 -5.6802 -3.3692 28 1 2.8009 -7.9721 -3.5968 29 1 1.4138 -8.4271 -4.6152 30 1 3.3194 -6.2713 -5.2542 31 1 3.3176 -7.7865 -5.9393 32 1 1.5938 -5.7533 -0.0769 33 1 2.7129 -3.7075 0.6531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:50 Heat of formation + Delta-G solvation = -56.842890 kcal Electronic energy + Delta-G solvation = -18432.982344 eV Core-core repulsion = 15392.163064 eV Total energy + Delta-G solvation = -3040.819280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.11161 -36.74498 -35.71351 -35.50804 -34.84667 -32.88451 -29.65534 -29.43326 -28.77738 -24.80431 -22.74992 -21.35181 -20.86530 -18.94318 -17.62241 -17.10023 -16.96155 -16.56282 -15.67288 -15.36879 -15.12913 -14.34820 -14.11389 -14.07613 -13.52391 -12.86600 -12.54170 -12.39525 -12.18952 -12.03104 -11.83019 -11.65102 -11.56322 -11.39463 -11.20447 -10.94673 -10.70118 -10.54961 -10.11455 -9.85461 -9.42280 -8.97601 -8.94799 -7.71384 -7.28994 -6.94677 -4.45534 0.53740 2.57994 2.96017 2.99014 3.02459 3.05825 3.10735 3.80489 3.94935 4.40277 4.44618 4.56812 4.61579 4.92953 5.21754 5.50262 5.54055 5.83165 6.10079 6.18877 6.42147 6.82662 6.83874 6.91964 6.99152 7.14851 7.19583 7.34021 7.48241 7.88256 7.91533 7.95025 8.13895 8.46279 8.71870 8.81610 9.98276 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029114 B = 0.004830 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.497528 B = 5795.457966 C = 6180.695855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.110 3.890 10 C -0.163 4.163 11 C -0.095 4.095 12 C -0.025 4.025 13 N -1.031 6.031 14 S 2.604 3.396 15 O -0.955 6.955 16 O -0.977 6.977 17 C -0.630 4.630 18 C 0.074 3.926 19 N -0.843 5.843 20 C -0.107 4.107 21 C -0.215 4.215 22 H 0.284 0.716 23 H 0.121 0.879 24 H 0.093 0.907 25 H 0.410 0.590 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.347 0.653 31 H 0.343 0.657 32 H 0.125 0.875 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -6.298 -6.664 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.183 4.183 11 C -0.117 4.117 12 C -0.121 4.121 13 N -0.783 5.783 14 S 2.698 3.302 15 O -0.945 6.945 16 O -0.967 6.967 17 C -0.759 4.759 18 C -0.058 4.058 19 N -0.374 5.374 20 C -0.128 4.128 21 C -0.235 4.235 22 H 0.095 0.905 23 H 0.139 0.861 24 H 0.111 0.889 25 H 0.246 0.754 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.529 -6.953 -6.599 9.707 hybrid contribution 0.788 1.244 0.123 1.477 sum 2.317 -5.709 -6.476 8.938 Atomic orbital electron populations 1.69867 1.07725 1.29658 1.33253 1.25993 0.94742 1.01656 0.92040 0.86259 0.80692 0.80317 0.79313 1.19173 1.20158 1.18391 1.19669 0.99185 0.91545 1.37513 0.89994 1.17745 0.90907 0.92168 0.88558 1.20968 0.99458 0.96870 1.01014 1.20466 0.99323 0.92100 0.99781 1.16801 1.01572 0.84413 1.09266 1.52340 1.18187 1.30611 1.77130 1.05501 0.74700 0.73662 0.76291 1.93549 1.65724 1.83591 1.51642 1.93539 1.59351 1.58947 1.84895 1.30663 1.13728 1.10577 1.20906 1.21386 0.96944 0.95170 0.92298 1.58698 1.38114 1.12192 1.28354 1.21073 0.96359 0.99335 0.96004 1.20661 1.04101 0.92197 1.06589 0.90545 0.86108 0.88908 0.75394 0.84526 0.84599 0.94032 0.89825 0.84034 0.84381 0.85722 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.91 10.98 55.54 0.61 -18.30 16 2 C 0.08 1.77 5.10 -17.34 -0.09 1.68 16 3 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -11.19 9.03 -37.87 -0.34 -11.53 16 8 H 0.08 1.95 7.92 -52.49 -0.42 1.54 16 9 C 0.11 2.74 5.59 -106.79 -0.60 2.14 16 10 C -0.16 -3.91 8.65 -39.26 -0.34 -4.25 16 11 C -0.09 -2.03 9.90 -39.77 -0.39 -2.42 16 12 C -0.02 -0.50 6.02 -83.69 -0.50 -1.01 16 13 N -1.03 -17.52 5.63 32.51 0.18 -17.34 16 14 S 2.60 41.22 5.35 -107.50 -0.58 40.65 16 15 O -0.96 -17.89 15.14 -57.54 -0.87 -18.76 16 16 O -0.98 -17.06 18.08 -57.54 -1.04 -18.10 16 17 C -0.63 -8.36 6.18 37.15 0.23 -8.13 16 18 C 0.07 0.87 6.79 -3.83 -0.03 0.85 16 19 N -0.84 -8.78 9.62 -10.37 -0.10 -8.88 16 20 C -0.11 -2.35 9.16 -39.77 -0.36 -2.71 16 21 C -0.22 -5.05 9.74 -39.26 -0.38 -5.43 16 22 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 23 H 0.12 2.99 6.12 -52.49 -0.32 2.67 16 24 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.41 6.15 8.92 -34.47 -0.31 5.85 16 26 H 0.14 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.14 1.86 8.14 -51.92 -0.42 1.44 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.35 3.36 8.99 -39.29 -0.35 3.01 16 31 H 0.34 2.73 9.08 -39.29 -0.36 2.37 16 32 H 0.13 2.68 5.61 -52.48 -0.29 2.39 16 33 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -29.77 295.50 -8.90 -38.67 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -3.72 Total: 15.98 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -2.81 Total: -30.81 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.69 Total: -44.52 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.91 Total: -36.86 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 41.22 SS G_CDS: -0.58 Total: 40.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.77 -8.90 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.173 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds