Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47463 * 274.71226 * 3 2 1 5 5 H 1.48498 * 109.46858 * 34.71608 * 3 2 1 6 6 H 1.48500 * 109.46947 * 154.71216 * 3 2 1 7 7 C 1.39867 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00171 * 200.02669 * 7 2 1 9 9 C 1.41138 * 120.00071 * 20.03298 * 7 2 1 10 10 C 1.40886 * 120.15424 * 22.94307 * 9 7 2 11 11 C 1.36339 * 119.83473 * 180.25190 * 10 9 7 12 12 C 1.39576 * 120.15976 * 359.49773 * 11 10 9 13 13 N 1.38857 * 119.84122 * 180.25557 * 12 11 10 14 14 S 1.65593 * 119.99872 * 133.53972 * 13 12 11 15 15 O 1.42101 * 104.27811 * 55.01267 * 14 13 12 16 16 O 1.42106 * 104.27584 * 182.86416 * 14 13 12 17 17 C 1.81400 * 104.45232 * 298.93762 * 14 13 12 18 18 C 1.52991 * 109.47472 * 181.84809 * 17 14 13 19 19 N 1.46898 * 109.47423 * 179.97438 * 18 17 14 20 20 C 1.39562 * 120.31501 * 0.23213 * 12 11 10 21 21 C 1.36343 * 120.16269 * 0.02705 * 20 12 11 22 22 H 0.97000 * 119.99489 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.08296 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.92266 * 179.77007 * 11 10 9 25 25 H 0.97008 * 119.99462 * 313.53615 * 13 12 11 26 26 H 1.09001 * 109.46722 * 301.85217 * 17 14 13 27 27 H 1.09004 * 109.46757 * 61.84453 * 17 14 13 28 28 H 1.09004 * 109.47189 * 300.00373 * 18 17 14 29 29 H 1.09004 * 109.47421 * 60.00050 * 18 17 14 30 30 H 1.00897 * 110.99903 * 56.04323 * 19 18 17 31 31 H 1.00898 * 111.00043 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.91643 * 180.02562 * 20 12 11 33 33 H 1.08003 * 120.08056 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3910 2.1039 -1.3953 5 1 1.4939 2.6217 0.7974 6 1 3.5868 1.4133 0.5981 7 6 2.0083 -1.2113 0.0005 8 1 3.0393 -1.2395 0.3209 9 6 1.3666 -2.3968 -0.4176 10 6 0.2436 -2.3323 -1.2659 11 6 -0.3744 -3.4813 -1.6617 12 6 0.1093 -4.7198 -1.2371 13 7 -0.5220 -5.8861 -1.6485 14 16 0.3753 -7.1588 -2.2117 15 8 1.3023 -7.4233 -1.1677 16 8 -0.5918 -8.1268 -2.5954 17 6 1.2298 -6.5001 -3.6700 18 6 2.0661 -7.6072 -4.3145 19 7 2.7577 -7.0739 -5.4957 20 6 1.2247 -4.7915 -0.4013 21 6 1.8496 -3.6504 0.0067 22 1 -0.4849 0.8401 0.0004 23 1 -0.1290 -1.3749 -1.5989 24 1 -1.2376 -3.4333 -2.3090 25 1 -1.4887 -5.9553 -1.6059 26 1 0.4950 -6.1352 -4.3876 27 1 1.8822 -5.6802 -3.3692 28 1 2.8009 -7.9721 -3.5968 29 1 1.4138 -8.4271 -4.6152 30 1 3.3194 -6.2713 -5.2542 31 1 3.3176 -7.7865 -5.9393 32 1 1.5938 -5.7533 -0.0769 33 1 2.7129 -3.7075 0.6531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = -79.677361 kcal Electronic energy + Delta-G solvation = -18433.972521 eV Core-core repulsion = 15392.163064 eV Total energy + Delta-G solvation = -3041.809457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82841 -38.16139 -37.08941 -36.50616 -36.44618 -34.56331 -31.42756 -30.52774 -30.42109 -26.55147 -23.76545 -23.07583 -22.57994 -20.30926 -19.34003 -18.53756 -18.42858 -17.73747 -17.11503 -16.78138 -16.30508 -15.78405 -15.45844 -15.38441 -14.92989 -14.54228 -14.16167 -13.79894 -13.73161 -13.41863 -13.24009 -13.10421 -13.03707 -12.76733 -12.64931 -12.56691 -12.18033 -12.05813 -11.65510 -11.56956 -11.13974 -10.63375 -9.78838 -9.50049 -9.04363 -8.67758 -6.29154 -0.76050 0.88018 1.14116 1.41672 1.52005 1.54717 1.74228 2.21432 2.65838 2.70925 3.25714 3.54991 3.68164 3.69394 3.89631 4.31159 4.40913 4.51285 4.59799 4.66347 4.81667 5.06216 5.15857 5.26867 5.39008 5.66874 5.74387 6.04157 6.08024 6.14019 6.27276 6.40711 6.50470 6.66778 6.91340 7.01834 8.27954 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029114 B = 0.004830 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.497528 B = 5795.457966 C = 6180.695855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.078 0.922 9 C 0.081 3.919 10 C -0.181 4.181 11 C -0.095 4.095 12 C -0.002 4.002 13 N -1.034 6.034 14 S 2.624 3.376 15 O -0.985 6.985 16 O -0.988 6.988 17 C -0.612 4.612 18 C 0.066 3.934 19 N -0.847 5.847 20 C -0.116 4.116 21 C -0.229 4.229 22 H 0.291 0.709 23 H 0.109 0.891 24 H 0.120 0.880 25 H 0.421 0.579 26 H 0.152 0.848 27 H 0.135 0.865 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.351 0.649 31 H 0.358 0.642 32 H 0.130 0.870 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -6.730 -8.038 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.097 0.903 9 C 0.078 3.922 10 C -0.201 4.201 11 C -0.116 4.116 12 C -0.097 4.097 13 N -0.786 5.786 14 S 2.720 3.280 15 O -0.975 6.975 16 O -0.978 6.978 17 C -0.744 4.744 18 C -0.067 4.067 19 N -0.380 5.380 20 C -0.137 4.137 21 C -0.249 4.249 22 H 0.102 0.898 23 H 0.127 0.873 24 H 0.138 0.862 25 H 0.258 0.742 26 H 0.170 0.830 27 H 0.153 0.847 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.148 0.852 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.560 -7.394 -7.938 10.960 hybrid contribution 0.726 1.136 0.442 1.419 sum 2.286 -6.258 -7.497 10.029 Atomic orbital electron populations 1.69898 1.08999 1.30898 1.34097 1.26754 0.95430 1.04518 0.91079 0.85197 0.79184 0.75942 0.79474 1.18544 1.19364 1.18282 1.19871 0.99419 0.92767 1.39714 0.90347 1.18042 0.91850 0.92865 0.89490 1.20965 1.00015 0.97341 1.01770 1.20690 0.99786 0.91505 0.99659 1.16743 1.00296 0.85320 1.07388 1.52318 1.19040 1.29254 1.77989 1.04633 0.74047 0.72827 0.76465 1.93512 1.66204 1.83965 1.53855 1.93532 1.60068 1.59082 1.85159 1.30463 1.13935 1.10933 1.19092 1.21501 0.97370 0.94732 0.93078 1.58670 1.38747 1.12948 1.27625 1.21206 0.97033 0.99026 0.96407 1.20796 1.04609 0.92434 1.07062 0.89819 0.87327 0.86175 0.74190 0.82994 0.84654 0.93243 0.88828 0.83589 0.82686 0.85203 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.13 10.98 21.82 0.24 -39.89 16 2 C 0.04 1.85 5.10 85.23 0.43 2.28 16 3 Si 0.98 36.01 29.60 68.60 2.03 38.04 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.49 -25.04 9.03 23.38 0.21 -24.83 16 8 H 0.08 3.89 7.92 -2.91 -0.02 3.86 16 9 C 0.08 4.13 5.59 -21.27 -0.12 4.01 16 10 C -0.18 -8.80 8.65 22.47 0.19 -8.60 16 11 C -0.09 -3.96 9.90 22.15 0.22 -3.74 16 12 C 0.00 -0.06 6.02 38.67 0.23 0.17 16 13 N -1.03 -33.11 5.63 -51.06 -0.29 -33.40 16 14 S 2.62 77.72 5.35 -56.49 -0.30 77.41 16 15 O -0.99 -35.56 15.14 -127.65 -1.93 -37.49 16 16 O -0.99 -32.21 18.08 -127.65 -2.31 -34.52 16 17 C -0.61 -14.58 6.18 71.98 0.44 -14.14 16 18 C 0.07 1.36 6.79 86.30 0.59 1.94 16 19 N -0.85 -15.23 9.62 -186.73 -1.80 -17.03 16 20 C -0.12 -5.06 9.16 22.15 0.20 -4.85 16 21 C -0.23 -10.95 9.74 22.48 0.22 -10.73 16 22 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 23 H 0.11 5.50 6.12 -2.91 -0.02 5.48 16 24 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 25 H 0.42 11.68 8.92 -96.74 -0.86 10.82 16 26 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.35 5.91 8.99 -89.70 -0.81 5.10 16 31 H 0.36 4.69 9.08 -89.70 -0.81 3.87 16 32 H 0.13 5.53 5.61 -2.91 -0.02 5.51 16 33 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -63.37 295.50 -3.05 -66.41 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -1.31 Total: 38.95 kcal Atomic # 6 Polarization: -61.11 SS G_CDS: 2.63 Total: -58.48 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.85 Total: -90.32 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -4.24 Total: -72.01 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 77.72 SS G_CDS: -0.30 Total: 77.41 kcal Total: -63.37 -3.05 -66.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.265 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds