Wall clock time and date at job start Mon Mar 30 2020 01:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47290 * 238.53152 * 3 2 1 5 5 C 1.36782 * 120.00505 * 263.46215 * 4 3 2 6 6 H 1.08006 * 120.00267 * 203.75109 * 5 4 3 7 7 C 1.39076 * 120.00148 * 23.75418 * 5 4 3 8 8 N 1.31349 * 119.99450 * 24.11316 * 7 5 4 9 9 Si 1.86796 * 120.00012 * 204.11185 * 7 5 4 10 10 H 1.48496 * 109.47013 * 90.00286 * 9 7 5 11 11 H 1.48505 * 109.46895 * 209.99577 * 9 7 5 12 12 H 1.48493 * 109.47357 * 329.99737 * 9 7 5 13 13 C 1.34783 * 119.99764 * 83.46371 * 4 3 2 14 14 O 1.21713 * 120.00195 * 183.68374 * 13 4 3 15 15 C 1.46816 * 119.99879 * 3.67445 * 13 4 3 16 16 C 1.35959 * 125.14252 * 173.46963 * 15 13 4 17 17 C 1.46202 * 106.07007 * 179.97438 * 16 15 13 18 18 C 1.39725 * 134.17749 * 179.97438 * 17 16 15 19 19 C 1.36622 * 119.70865 * 179.97438 * 18 17 16 20 20 C 1.38845 * 120.44284 * 0.03837 * 19 18 17 21 21 C 1.37818 * 120.74412 * 359.97438 * 20 19 18 22 22 C 1.39002 * 119.86136 * 359.97438 * 21 20 19 23 23 O 1.34735 * 133.22657 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.46947 * 118.53899 * 3 2 1 25 25 H 1.09003 * 109.47629 * 358.53823 * 3 2 1 26 26 H 0.97004 * 119.99628 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.96610 * 359.97438 * 16 15 13 28 28 H 1.07999 * 120.14675 * 0.02562 * 18 17 16 29 29 H 1.08003 * 119.78084 * 180.02562 * 19 18 17 30 30 H 1.07999 * 119.62837 * 180.26025 * 20 19 18 31 31 H 1.08000 * 120.06990 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7219 1.1780 5 6 3.4506 2.0389 1.0754 6 1 4.1447 2.4681 1.7829 7 6 2.9173 2.8256 0.0600 8 7 1.7704 2.4986 -0.4903 9 14 3.8322 4.3470 -0.5210 10 1 4.7514 3.9793 -1.6278 11 1 2.8564 5.3573 -1.0032 12 1 4.6158 4.9139 0.6057 13 6 3.1956 0.0876 2.3631 14 8 3.5369 0.7031 3.3561 15 6 2.8923 -1.3459 2.4562 16 6 3.0776 -2.1148 3.5620 17 6 2.6425 -3.4617 3.1960 18 6 2.5811 -4.6827 3.8726 19 6 2.1090 -5.7910 3.2280 20 6 1.6912 -5.7115 1.9063 21 6 1.7439 -4.5168 1.2213 22 6 2.2194 -3.3754 1.8563 23 8 2.3860 -2.0992 1.4576 24 1 2.9711 0.4918 -0.9029 25 1 2.9719 -1.0265 0.0262 26 1 1.3982 3.0475 -1.1983 27 1 3.4674 -1.7954 4.5173 28 1 2.9047 -4.7499 4.9007 29 1 2.0607 -6.7353 3.7500 30 1 1.3163 -6.5949 1.4108 31 1 1.4157 -4.4673 0.1936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:42 Heat of formation + Delta-G solvation = 23.565953 kcal Electronic energy + Delta-G solvation = -19815.561067 eV Core-core repulsion = 16642.784625 eV Total energy + Delta-G solvation = -3172.776442 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.48079 -40.53914 -38.69779 -37.77023 -36.30693 -33.98798 -33.71518 -31.34903 -30.58621 -29.34328 -27.31188 -24.75633 -23.52260 -22.52502 -21.36939 -19.91283 -19.06576 -18.64364 -18.11884 -17.16105 -17.05671 -16.76998 -16.02876 -15.70703 -15.31975 -14.99700 -14.97783 -14.78571 -14.08070 -13.97324 -13.87772 -13.55509 -13.27285 -13.19139 -12.93164 -12.79552 -12.48362 -12.21539 -12.11336 -11.82063 -11.26148 -11.17711 -10.97381 -10.10627 -9.59877 -9.21292 -8.56271 -6.12864 -0.35401 0.42144 0.88536 1.43229 1.47692 1.55290 1.61512 1.78796 2.13754 2.24654 2.31103 2.79175 2.85586 2.92300 3.46396 3.53250 3.69089 4.02338 4.08783 4.20172 4.38357 4.43031 4.55763 4.62710 4.67821 4.91228 5.19051 5.35636 5.36644 5.43973 5.52606 5.62372 5.88773 6.10145 6.25563 6.86659 6.91611 7.08761 7.64211 8.47665 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033127 B = 0.005534 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.020047 B = 5058.355753 C = 5636.939123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.259 3.741 3 C 0.220 3.780 4 N -0.424 5.424 5 C -0.349 4.349 6 H 0.095 0.905 7 C 0.011 3.989 8 N -0.877 5.877 9 Si 0.999 3.001 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.504 3.496 14 O -0.593 6.593 15 C -0.021 4.021 16 C -0.140 4.140 17 C -0.155 4.155 18 C -0.072 4.072 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.124 4.124 22 C 0.028 3.972 23 O -0.193 6.193 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.281 0.719 27 H 0.170 0.830 28 H 0.150 0.850 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -16.012 0.102 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.058 4.058 3 C 0.094 3.906 4 N -0.140 5.140 5 C -0.476 4.476 6 H 0.113 0.887 7 C -0.195 4.195 8 N -0.512 5.512 9 Si 0.822 3.178 10 H -0.178 1.178 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.294 3.706 14 O -0.481 6.481 15 C -0.070 4.070 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.090 4.090 19 C -0.150 4.150 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.019 4.019 23 O -0.096 6.096 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.167 0.833 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.761 -15.498 0.122 15.598 hybrid contribution 0.495 1.389 -0.107 1.479 sum 2.255 -14.109 0.015 14.288 Atomic orbital electron populations 1.80836 1.14390 1.13166 1.09348 1.29341 0.95508 0.89103 0.91870 1.19109 0.80986 0.98770 0.91774 1.43710 1.53519 1.10744 1.06019 1.19805 1.25943 0.85606 1.16244 0.88727 1.26260 0.94593 1.02080 0.96522 1.69959 1.14676 1.41529 1.25037 0.84841 0.77915 0.76133 0.78951 1.17791 1.20917 1.19415 1.17053 0.85715 0.84076 0.83707 1.90676 1.55163 1.66065 1.36158 1.22119 1.04257 0.91881 0.88772 1.22804 1.03132 0.91156 0.99083 1.20136 1.05710 0.94923 0.94828 1.20723 0.97922 0.89590 1.00773 1.21249 0.99329 0.99284 0.95111 1.21480 0.96844 0.96656 0.94602 1.20393 1.03263 0.88741 1.01810 1.20496 1.02063 0.84585 0.94764 1.84234 1.68951 1.18620 1.37760 0.85383 0.85200 0.90847 0.81296 0.83275 0.81505 0.80963 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -25.10 18.54 20.01 0.37 -24.73 16 2 C 0.26 12.27 12.39 89.44 1.11 13.38 16 3 C 0.22 9.34 4.76 84.57 0.40 9.74 16 4 N -0.42 -21.07 2.58 -649.81 -1.68 -22.75 16 5 C -0.35 -18.30 9.14 84.12 0.77 -17.53 16 6 H 0.09 5.21 7.54 -2.91 -0.02 5.19 16 7 C 0.01 0.53 4.73 84.97 0.40 0.93 16 8 N -0.88 -44.46 9.93 21.69 0.22 -44.24 16 9 Si 1.00 38.71 29.62 68.60 2.03 40.74 16 10 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 13 C 0.50 25.37 7.52 86.49 0.65 26.02 16 14 O -0.59 -33.38 16.56 -4.39 -0.07 -33.45 16 15 C -0.02 -0.88 6.70 23.99 0.16 -0.71 16 16 C -0.14 -5.18 10.82 23.81 0.26 -4.92 16 17 C -0.16 -4.84 6.38 -20.23 -0.13 -4.97 16 18 C -0.07 -1.61 10.06 22.25 0.22 -1.38 16 19 C -0.13 -2.19 9.98 22.04 0.22 -1.97 16 20 C -0.08 -1.33 10.01 22.32 0.22 -1.11 16 21 C -0.12 -2.99 10.07 22.35 0.23 -2.77 16 22 C 0.03 0.92 7.41 23.07 0.17 1.09 16 23 O -0.19 -7.42 6.38 -13.19 -0.08 -7.50 16 24 H 0.13 5.21 6.92 -2.38 -0.02 5.19 16 25 H 0.13 4.76 5.39 -2.39 -0.01 4.74 16 26 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 27 H 0.17 5.80 8.06 -2.91 -0.02 5.77 16 28 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 30 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -69.10 283.33 6.65 -62.45 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.18 Total: 13.68 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 4.68 Total: 15.80 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -1.09 Total: -91.72 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.16 Total: -40.95 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -69.10 6.65 -62.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.019 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds