Wall clock time and date at job start Mon Mar 30 2020 01:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30531 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47231 * 274.98760 * 3 2 1 5 5 H 1.48502 * 109.46551 * 34.98824 * 3 2 1 6 6 H 1.48495 * 109.47085 * 154.98479 * 3 2 1 7 7 C 1.40400 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99955 * 186.00597 * 7 2 1 9 9 C 1.40371 * 119.99763 * 5.99958 * 7 2 1 10 10 N 1.33132 * 126.63270 * 174.32033 * 9 7 2 11 11 C 1.34571 * 105.47373 * 180.02562 * 10 9 7 12 12 C 1.47408 * 126.25603 * 179.97438 * 11 10 9 13 13 C 1.34891 * 120.10033 * 0.02562 * 12 11 10 14 14 C 1.47414 * 117.91434 * 180.54132 * 13 12 11 15 15 C 1.39257 * 121.49258 * 196.37095 * 14 13 12 16 16 C 1.38062 * 119.51633 * 179.97438 * 15 14 13 17 17 C 1.38477 * 120.32697 * 0.02562 * 16 15 14 18 18 C 1.38314 * 120.59931 * 359.97438 * 17 16 15 19 19 C 1.38274 * 119.84263 * 359.97438 * 18 17 16 20 20 O 1.35670 * 121.35669 * 179.97438 * 19 18 17 21 21 C 1.42810 * 117.23034 * 146.11006 * 20 19 18 22 22 N 1.31622 * 107.48505 * 0.22477 * 11 10 9 23 23 O 1.21259 * 110.46473 * 359.60724 * 22 11 10 24 24 H 0.97003 * 120.00253 * 359.97438 * 1 2 3 25 25 H 1.08000 * 121.04285 * 0.55649 * 13 12 11 26 26 H 1.08001 * 120.24070 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.83518 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.70166 * 180.27149 * 17 16 15 29 29 H 1.08000 * 120.08102 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.26416 * 168.52466 * 21 20 19 31 31 H 1.08998 * 109.26614 * 287.98227 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.3815 2.1073 -1.3948 5 1 1.4934 2.6199 0.8029 6 1 3.5856 1.4120 0.5920 7 6 2.0074 -1.2159 -0.0005 8 1 3.0829 -1.2184 0.0973 9 6 1.3113 -2.4281 -0.1282 10 7 1.8451 -3.6416 -0.2502 11 6 0.8009 -4.4856 -0.3422 12 6 0.8744 -5.9501 -0.4929 13 6 2.0736 -6.5650 -0.5501 14 6 2.0909 -8.0299 -0.7135 15 6 3.2355 -8.7779 -0.4493 16 6 3.2060 -10.1481 -0.6156 17 6 2.0478 -10.7759 -1.0424 18 6 0.9058 -10.0420 -1.3074 19 6 0.9173 -8.6689 -1.1452 20 8 -0.1850 -7.9190 -1.3968 21 6 -0.3902 -6.7648 -0.5813 22 7 -0.2979 -3.7637 -0.2785 23 8 -0.0264 -2.5887 -0.1515 24 1 -0.4851 0.8400 0.0004 25 1 2.9923 -6.0017 -0.4782 26 1 4.1393 -8.2897 -0.1160 27 1 4.0906 -10.7333 -0.4117 28 1 2.0348 -11.8489 -1.1648 29 1 0.0070 -10.5403 -1.6395 30 1 -1.1816 -6.1538 -1.0154 31 1 -0.6875 -7.0795 0.4191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062716596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:37 Heat of formation + Delta-G solvation = 49.852169 kcal Electronic energy + Delta-G solvation = -19096.646839 eV Core-core repulsion = 15925.010253 eV Total energy + Delta-G solvation = -3171.636586 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09123 -40.47432 -37.41340 -34.94841 -34.21306 -32.87942 -31.07528 -30.32764 -29.56310 -26.71489 -25.66089 -23.93732 -22.51516 -21.75877 -21.04493 -18.88600 -17.95318 -17.33422 -16.35422 -16.01928 -15.77038 -15.51239 -14.93022 -14.63563 -14.48489 -13.80856 -13.43943 -13.29876 -13.01898 -12.61501 -12.04169 -11.81702 -11.73008 -11.53491 -11.48842 -11.28986 -10.60550 -10.53540 -10.34187 -10.21430 -9.96778 -9.55992 -9.09258 -8.72349 -8.40810 -7.47378 -7.16785 -5.12100 0.79709 1.38547 2.22761 2.74764 2.92187 2.98664 3.27184 3.45766 3.68238 3.85856 4.08919 4.57128 4.73226 4.83174 4.93006 4.96816 5.20541 5.25492 5.29782 5.41764 5.53855 5.60604 5.81868 5.96464 6.05901 6.20982 6.33111 6.47914 6.67082 6.74436 6.77483 6.94644 7.23533 7.46086 7.78474 7.97949 8.19418 8.35794 9.82156 10.18757 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.003900 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.836818 B = 7178.645381 C = 7740.618083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.115 0.885 9 C 0.305 3.695 10 N -0.603 5.603 11 C 0.190 3.810 12 C -0.061 4.061 13 C -0.079 4.079 14 C -0.117 4.117 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.092 4.092 18 C -0.146 4.146 19 C 0.125 3.875 20 O -0.311 6.311 21 C 0.114 3.886 22 N -0.457 5.457 23 O 0.054 5.946 24 H 0.293 0.707 25 H 0.146 0.854 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -11.811 -0.407 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.452 4.452 8 H 0.133 0.867 9 C 0.115 3.885 10 N -0.347 5.347 11 C -0.080 4.080 12 C -0.063 4.063 13 C -0.101 4.101 14 C -0.118 4.118 15 C -0.092 4.092 16 C -0.169 4.169 17 C -0.110 4.110 18 C -0.164 4.164 19 C 0.079 3.921 20 O -0.225 6.225 21 C 0.039 3.961 22 N -0.184 5.184 23 O 0.003 5.997 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.295 -12.256 -0.601 12.483 hybrid contribution 0.468 1.187 0.144 1.284 sum 2.763 -11.069 -0.457 11.417 Atomic orbital electron populations 1.69642 1.07810 1.31001 1.30415 1.26207 0.95141 1.02383 0.91760 0.85794 0.80207 0.78428 0.79544 1.18871 1.19626 1.17894 1.18610 0.95507 0.85542 1.45536 0.86739 1.24154 0.79640 0.93893 0.90834 1.72435 1.27546 0.98775 1.35975 1.23024 0.87062 0.94494 1.03380 1.20078 0.95122 0.88878 1.02264 1.21955 0.98239 0.90925 0.98940 1.19263 0.93815 0.93716 1.04991 1.21069 0.96936 0.93663 0.97484 1.21030 0.98484 0.94496 1.02878 1.21009 0.92211 0.99628 0.98182 1.20503 0.99882 0.90506 1.05538 1.19155 0.85817 0.90655 0.96433 1.85995 1.41039 1.37732 1.57690 1.21569 0.95552 0.83488 0.95496 1.74710 1.23720 0.91485 1.28493 1.85496 1.25966 1.18225 1.69971 0.89542 0.83660 0.85210 0.85794 0.85559 0.85141 0.85869 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.98 12.07 55.57 0.67 -18.31 16 2 C 0.07 1.67 5.49 -17.29 -0.10 1.57 16 3 Si 0.94 17.18 29.57 -169.99 -5.03 12.16 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.58 7.11 56.52 0.40 -4.17 16 7 C -0.41 -10.72 9.47 -37.97 -0.36 -11.08 16 8 H 0.11 2.78 7.86 -52.49 -0.41 2.37 16 9 C 0.30 8.56 7.79 -16.32 -0.13 8.43 16 10 N -0.60 -16.42 11.25 -11.71 -0.13 -16.55 16 11 C 0.19 4.85 7.76 -156.44 -1.21 3.63 16 12 C -0.06 -1.29 5.98 -102.08 -0.61 -1.90 16 13 C -0.08 -1.49 9.71 -37.04 -0.36 -1.85 16 14 C -0.12 -1.90 5.80 -104.96 -0.61 -2.51 16 15 C -0.07 -0.97 9.85 -39.27 -0.39 -1.35 16 16 C -0.15 -1.66 10.03 -39.56 -0.40 -2.06 16 17 C -0.09 -0.99 10.02 -39.47 -0.40 -1.39 16 18 C -0.15 -1.87 10.01 -39.54 -0.40 -2.26 16 19 C 0.12 1.99 6.46 -38.74 -0.25 1.74 16 20 O -0.31 -5.37 10.41 -18.71 -0.19 -5.56 16 21 C 0.11 2.04 6.87 36.00 0.25 2.29 16 22 N -0.46 -12.30 11.85 31.42 0.37 -11.93 16 23 O 0.05 1.55 9.73 15.15 0.15 1.70 16 24 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.15 2.79 7.82 -52.49 -0.41 2.38 16 26 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 2.22 7.88 -51.93 -0.41 1.81 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 283.68 15.07 4.27 4.27 Total: -1.00 -29.98 283.68 -7.32 -37.30 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -2.48 Total: 3.65 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -4.95 Total: -6.74 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.91 Total: -46.78 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.05 Total: -3.87 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.98 -7.32 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062716596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.154 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds