Wall clock time and date at job start Mon Mar 30 2020 01:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30531 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47231 * 274.98760 * 3 2 1 5 5 H 1.48502 * 109.46551 * 34.98824 * 3 2 1 6 6 H 1.48495 * 109.47085 * 154.98479 * 3 2 1 7 7 C 1.40400 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99955 * 186.00597 * 7 2 1 9 9 C 1.40371 * 119.99763 * 5.99958 * 7 2 1 10 10 N 1.33132 * 126.63270 * 174.32033 * 9 7 2 11 11 C 1.34571 * 105.47373 * 180.02562 * 10 9 7 12 12 C 1.47408 * 126.25603 * 179.97438 * 11 10 9 13 13 C 1.34891 * 120.10033 * 0.02562 * 12 11 10 14 14 C 1.47414 * 117.91434 * 180.54132 * 13 12 11 15 15 C 1.39257 * 121.49258 * 196.37095 * 14 13 12 16 16 C 1.38062 * 119.51633 * 179.97438 * 15 14 13 17 17 C 1.38477 * 120.32697 * 0.02562 * 16 15 14 18 18 C 1.38314 * 120.59931 * 359.97438 * 17 16 15 19 19 C 1.38274 * 119.84263 * 359.97438 * 18 17 16 20 20 O 1.35670 * 121.35669 * 179.97438 * 19 18 17 21 21 C 1.42810 * 117.23034 * 146.11006 * 20 19 18 22 22 N 1.31622 * 107.48505 * 0.22477 * 11 10 9 23 23 O 1.21259 * 110.46473 * 359.60724 * 22 11 10 24 24 H 0.97003 * 120.00253 * 359.97438 * 1 2 3 25 25 H 1.08000 * 121.04285 * 0.55649 * 13 12 11 26 26 H 1.08001 * 120.24070 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.83518 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.70166 * 180.27149 * 17 16 15 29 29 H 1.08000 * 120.08102 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.26416 * 168.52466 * 21 20 19 31 31 H 1.08998 * 109.26614 * 287.98227 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.3815 2.1073 -1.3948 5 1 1.4934 2.6199 0.8029 6 1 3.5856 1.4120 0.5920 7 6 2.0074 -1.2159 -0.0005 8 1 3.0829 -1.2184 0.0973 9 6 1.3113 -2.4281 -0.1282 10 7 1.8451 -3.6416 -0.2502 11 6 0.8009 -4.4856 -0.3422 12 6 0.8744 -5.9501 -0.4929 13 6 2.0736 -6.5650 -0.5501 14 6 2.0909 -8.0299 -0.7135 15 6 3.2355 -8.7779 -0.4493 16 6 3.2060 -10.1481 -0.6156 17 6 2.0478 -10.7759 -1.0424 18 6 0.9058 -10.0420 -1.3074 19 6 0.9173 -8.6689 -1.1452 20 8 -0.1850 -7.9190 -1.3968 21 6 -0.3902 -6.7648 -0.5813 22 7 -0.2979 -3.7637 -0.2785 23 8 -0.0264 -2.5887 -0.1515 24 1 -0.4851 0.8400 0.0004 25 1 2.9923 -6.0017 -0.4782 26 1 4.1393 -8.2897 -0.1160 27 1 4.0906 -10.7333 -0.4117 28 1 2.0348 -11.8489 -1.1648 29 1 0.0070 -10.5403 -1.6395 30 1 -1.1816 -6.1538 -1.0154 31 1 -0.6875 -7.0795 0.4191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062716596.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:37 Heat of formation + Delta-G solvation = 30.029802 kcal Electronic energy + Delta-G solvation = -19097.506401 eV Core-core repulsion = 15925.010253 eV Total energy + Delta-G solvation = -3172.496149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.07326 -41.68400 -38.51533 -36.61443 -36.13579 -34.56966 -32.71214 -31.39785 -31.07856 -28.64315 -27.05595 -25.42312 -23.65996 -23.56596 -22.69736 -20.52327 -19.24331 -18.80967 -17.97165 -17.78272 -17.31818 -17.10107 -16.54104 -15.92743 -15.70920 -15.15733 -14.89433 -14.70383 -14.26235 -13.78289 -13.66442 -13.54370 -13.27865 -13.10395 -12.72503 -12.52979 -12.26354 -12.11655 -11.98636 -11.69263 -11.57516 -11.12584 -11.04868 -10.43195 -9.60399 -9.00131 -8.88099 -7.15894 -0.49389 0.37400 0.78049 1.10733 1.39793 1.60773 1.65494 2.07775 2.13667 2.31927 2.82977 2.94297 2.98330 3.26373 3.36390 3.68653 3.92017 4.06948 4.15573 4.25509 4.29823 4.39270 4.42967 4.66172 4.87121 4.90162 5.05792 5.15955 5.31056 5.43117 5.51520 5.56277 5.79126 5.80081 5.98444 6.19788 6.26914 6.38816 8.01231 8.16606 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.003900 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.836818 B = 7178.645381 C = 7740.618083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.028 3.972 3 Si 1.024 2.976 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.246 1.246 7 C -0.430 4.430 8 H 0.124 0.876 9 C 0.272 3.728 10 N -0.629 5.629 11 C 0.201 3.799 12 C -0.113 4.113 13 C -0.045 4.045 14 C -0.154 4.154 15 C -0.071 4.071 16 C -0.143 4.143 17 C -0.071 4.071 18 C -0.149 4.149 19 C 0.099 3.901 20 O -0.319 6.319 21 C 0.128 3.872 22 N -0.483 5.483 23 O 0.019 5.981 24 H 0.307 0.693 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.112 0.888 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -13.575 -0.451 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.194 4.194 3 Si 0.840 3.160 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.169 1.169 7 C -0.467 4.467 8 H 0.142 0.858 9 C 0.084 3.916 10 N -0.374 5.374 11 C -0.070 4.070 12 C -0.115 4.115 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.090 4.090 16 C -0.160 4.160 17 C -0.089 4.089 18 C -0.167 4.167 19 C 0.054 3.946 20 O -0.234 6.234 21 C 0.053 3.947 22 N -0.216 5.216 23 O -0.025 6.025 24 H 0.119 0.881 25 H 0.153 0.847 26 H 0.162 0.838 27 H 0.181 0.819 28 H 0.187 0.813 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.207 -14.008 -0.640 14.640 hybrid contribution 0.008 1.490 0.135 1.496 sum 4.216 -12.518 -0.505 13.219 Atomic orbital electron populations 1.69699 1.09785 1.33129 1.29390 1.27417 0.95927 1.05856 0.90188 0.84572 0.78801 0.72580 0.80047 1.18003 1.18110 1.16928 1.19179 0.96231 0.86091 1.45242 0.85781 1.24774 0.79980 0.95028 0.91805 1.72398 1.28348 0.99024 1.37679 1.23712 0.86229 0.96294 1.00732 1.20261 0.97317 0.86980 1.06943 1.22149 0.97019 0.92944 0.94628 1.19277 0.95697 0.92034 1.08453 1.21380 0.96224 0.94894 0.96455 1.21510 1.00012 0.93554 1.00965 1.21580 0.90822 1.01618 0.94892 1.20885 1.01717 0.89115 1.05031 1.19592 0.85211 0.91878 0.97870 1.85959 1.41954 1.37426 1.58012 1.21343 0.93870 0.83481 0.96028 1.74626 1.24386 0.91229 1.31372 1.85426 1.26225 1.19110 1.71744 0.88111 0.84693 0.83793 0.81946 0.81261 0.83234 0.87006 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.39 12.07 21.90 0.26 -40.13 16 2 C 0.03 1.35 5.49 85.41 0.47 1.82 16 3 Si 1.02 34.33 29.57 68.60 2.03 36.36 16 4 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.26 -8.01 7.11 99.48 0.71 -7.30 16 6 H -0.25 -7.85 7.11 99.48 0.71 -7.15 16 7 C -0.43 -22.99 9.47 23.32 0.22 -22.77 16 8 H 0.12 6.16 7.86 -2.91 -0.02 6.14 16 9 C 0.27 16.14 7.79 85.06 0.66 16.80 16 10 N -0.63 -36.25 11.25 -305.16 -3.43 -39.68 16 11 C 0.20 10.89 7.76 136.95 1.06 11.96 16 12 C -0.11 -5.00 5.98 -18.22 -0.11 -5.11 16 13 C -0.05 -1.77 9.71 23.92 0.23 -1.54 16 14 C -0.15 -4.88 5.80 -20.08 -0.12 -5.00 16 15 C -0.07 -1.70 9.85 22.47 0.22 -1.47 16 16 C -0.14 -2.45 10.03 22.28 0.22 -2.22 16 17 C -0.07 -1.17 10.02 22.34 0.22 -0.95 16 18 C -0.15 -3.36 10.01 22.30 0.22 -3.13 16 19 C 0.10 3.07 6.46 22.81 0.15 3.22 16 20 O -0.32 -11.21 10.41 -89.87 -0.94 -12.15 16 21 C 0.13 4.83 6.87 71.23 0.49 5.32 16 22 N -0.48 -27.84 11.85 -55.96 -0.66 -28.50 16 23 O 0.02 1.19 9.73 64.30 0.63 1.81 16 24 H 0.31 13.58 8.29 -92.71 -0.77 12.81 16 25 H 0.14 5.41 7.82 -2.91 -0.02 5.39 16 26 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 27 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 28 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.11 4.36 7.88 -2.39 -0.02 4.34 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -70.28 283.68 3.01 -67.27 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.17 Total: 18.10 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 3.95 Total: -3.08 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.83 Total: -108.31 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.31 Total: -10.34 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Total: -70.28 3.01 -67.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062716596.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.298 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds