Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46834 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47093 * 299.99768 * 3 2 1 6 6 H 1.48495 * 109.47280 * 59.99973 * 3 2 1 7 7 C 1.38945 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99989 * 198.21834 * 7 2 1 9 9 N 1.37099 * 120.00060 * 18.22204 * 7 2 1 10 10 C 1.34772 * 120.00345 * 44.28039 * 9 7 2 11 11 O 1.21294 * 120.00007 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00242 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47123 * 180.02562 * 12 10 9 14 14 C 1.44540 * 120.61605 * 269.74574 * 13 12 10 15 15 C 1.53432 * 111.72075 * 180.27437 * 14 13 12 16 16 S 1.82069 * 103.93155 * 0.02562 * 15 14 13 17 17 C 1.33002 * 120.61585 * 90.02544 * 13 12 10 18 18 O 1.21621 * 125.20126 * 359.75956 * 17 13 12 19 19 C 1.46507 * 119.99674 * 224.28533 * 9 7 2 20 20 C 1.52997 * 117.50028 * 3.21895 * 19 9 7 21 21 C 1.52995 * 60.00118 * 252.51342 * 20 19 9 22 22 H 0.97006 * 119.99956 * 354.93116 * 1 2 3 23 23 H 1.08999 * 109.46378 * 60.00201 * 12 10 9 24 24 H 1.08998 * 109.46713 * 300.00327 * 12 10 9 25 25 H 1.08998 * 109.04027 * 300.87232 * 14 13 12 26 26 H 1.09001 * 109.04352 * 59.68271 * 14 13 12 27 27 H 1.08998 * 110.53578 * 241.39004 * 15 14 13 28 28 H 1.08996 * 110.53204 * 118.61245 * 15 14 13 29 29 H 1.08996 * 115.54887 * 148.93393 * 19 9 7 30 30 H 1.09008 * 117.50019 * 0.02562 * 20 19 9 31 31 H 1.08997 * 117.50192 * 145.02143 * 20 19 9 32 32 H 1.08994 * 117.50205 * 252.50974 * 21 20 19 33 33 H 1.09003 * 117.51807 * 107.48122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0482 -1.2267 0.2930 9 7 1.3748 -2.3610 -0.3702 10 6 0.5784 -2.3748 -1.4573 11 8 0.4228 -1.3631 -2.1081 12 6 -0.1189 -3.6473 -1.8645 13 7 -0.9179 -3.4027 -3.0678 14 6 -2.2955 -2.9781 -2.9630 15 6 -2.9380 -2.7891 -4.3434 16 16 -1.6036 -3.2080 -5.5091 17 6 -0.3907 -3.5726 -4.2770 18 8 0.7514 -3.9262 -4.5006 19 6 1.5631 -3.5831 0.4155 20 6 2.4182 -3.4851 1.6804 21 6 2.9641 -4.1975 0.4414 22 1 -0.4850 0.8368 0.0742 23 1 -0.7707 -3.9789 -1.0563 24 1 0.6235 -4.4179 -2.0721 25 1 -2.8580 -3.7294 -2.4088 26 1 -2.3363 -2.0341 -2.4196 27 1 -3.2545 -1.7550 -4.4795 28 1 -3.7816 -3.4678 -4.4686 29 1 0.7138 -4.2660 0.4334 30 1 2.8403 -2.5111 1.9284 31 1 2.1313 -4.1034 2.5310 32 1 3.0364 -5.2844 0.4768 33 1 3.7456 -3.6926 -0.1264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = -12.340844 kcal Electronic energy + Delta-G solvation = -19232.284220 eV Core-core repulsion = 16193.394694 eV Total energy + Delta-G solvation = -3038.889526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85699 -38.29237 -36.48986 -35.82358 -32.87422 -31.46229 -30.76556 -27.86601 -25.04193 -24.22343 -21.79647 -21.43447 -20.88899 -19.17767 -17.91965 -17.06585 -16.36966 -16.12238 -15.59938 -14.74032 -14.60110 -14.20478 -13.96580 -13.86902 -13.68820 -13.43816 -12.92468 -12.66542 -12.17112 -11.85208 -11.54029 -11.13157 -10.95435 -10.89803 -10.80823 -10.57737 -10.20162 -10.03240 -9.80771 -9.58069 -9.14852 -8.72165 -8.23091 -7.83959 -7.09304 -6.18649 -3.92501 1.35668 1.98137 2.58391 3.25808 3.35221 3.38068 3.38576 4.00330 4.22597 4.35068 4.68632 4.72274 4.81554 5.19579 5.34207 5.42680 5.47041 5.55549 5.60097 5.71856 5.76869 5.80706 6.00214 6.20561 6.27048 6.42058 6.70034 6.88791 7.21004 7.57118 7.91775 8.20996 8.98111 9.07639 9.58374 10.18501 10.90806 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.007171 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.264722 B = 3903.459502 C = 4707.911547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.345 4.345 8 H 0.078 0.922 9 N -0.425 5.425 10 C 0.468 3.532 11 O -0.521 6.521 12 C 0.103 3.897 13 N -0.581 5.581 14 C 0.101 3.899 15 C -0.091 4.091 16 S -0.201 6.201 17 C 0.556 3.444 18 O -0.488 6.488 19 C 0.069 3.931 20 C -0.171 4.171 21 C -0.206 4.206 22 H 0.263 0.737 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 -8.253 -1.024 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.471 4.471 8 H 0.096 0.904 9 N -0.147 5.147 10 C 0.254 3.746 11 O -0.398 6.398 12 C -0.026 4.026 13 N -0.316 5.316 14 C -0.023 4.023 15 C -0.240 4.240 16 S 0.024 5.976 17 C 0.234 3.766 18 O -0.365 6.365 19 C -0.037 4.037 20 C -0.209 4.209 21 C -0.245 4.245 22 H 0.073 0.927 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.263 -7.788 -2.791 10.377 hybrid contribution 0.253 0.870 1.466 1.723 sum -6.010 -6.918 -1.326 9.260 Atomic orbital electron populations 1.69812 1.06555 1.27255 1.43358 1.25215 0.94883 0.99380 0.94131 0.86144 0.79933 0.82498 0.77465 1.19527 1.20653 1.21148 1.18899 0.94567 0.83732 1.49945 0.90397 1.42735 1.44020 1.06955 1.20990 1.20003 0.83813 0.88980 0.81851 1.90554 1.62350 1.34069 1.52798 1.21557 0.95712 0.99252 0.86122 1.47293 1.12249 1.66254 1.05812 1.21353 0.81092 1.03362 0.96533 1.24133 0.98868 1.07290 0.93753 1.87152 1.10841 1.84680 1.14951 1.21428 0.90108 0.79975 0.85126 1.90836 1.16486 1.49867 1.79326 1.21730 0.92745 0.91494 0.97710 1.23059 1.04250 1.02547 0.90997 1.23326 0.99610 0.98634 1.02950 0.92730 0.88674 0.88102 0.89679 0.88276 0.86725 0.86867 0.88081 0.87438 0.89713 0.89646 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.85 11.74 55.50 0.65 -23.20 16 2 C 0.07 2.05 4.38 -17.47 -0.08 1.97 16 3 Si 0.91 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.34 -9.30 7.92 -14.93 -0.12 -9.42 16 8 H 0.08 2.06 7.26 -52.48 -0.38 1.68 16 9 N -0.43 -10.41 2.83 -107.73 -0.31 -10.72 16 10 C 0.47 11.61 7.03 -10.99 -0.08 11.53 16 11 O -0.52 -15.15 14.19 5.54 0.08 -15.07 16 12 C 0.10 1.95 4.67 -5.20 -0.02 1.92 16 13 N -0.58 -10.49 2.26 -180.66 -0.41 -10.89 16 14 C 0.10 1.39 6.80 -4.86 -0.03 1.36 16 15 C -0.09 -1.04 7.42 37.38 0.28 -0.76 16 16 S -0.20 -3.18 23.25 -107.50 -2.50 -5.68 16 17 C 0.56 11.05 8.26 53.27 0.44 11.49 16 18 O -0.49 -11.35 17.28 5.26 0.09 -11.26 16 19 C 0.07 1.33 5.87 -67.93 -0.40 0.93 16 20 C -0.17 -2.97 9.80 -26.74 -0.26 -3.23 16 21 C -0.21 -3.48 10.36 -26.73 -0.28 -3.76 16 22 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 23 H 0.10 1.48 7.50 -51.93 -0.39 1.09 16 24 H 0.10 1.84 7.62 -51.93 -0.40 1.45 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.65 6.96 -51.93 -0.36 1.29 16 30 H 0.11 2.09 6.72 -51.92 -0.35 1.74 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -34.87 296.36 -7.48 -42.34 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.97 Total: 1.09 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.55 Total: 12.04 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.06 Total: -44.81 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: 0.17 Total: -26.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.50 Total: -5.68 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.87 -7.48 -42.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.004 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds