Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46834 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47093 * 299.99768 * 3 2 1 6 6 H 1.48495 * 109.47280 * 59.99973 * 3 2 1 7 7 C 1.38945 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99989 * 198.21834 * 7 2 1 9 9 N 1.37099 * 120.00060 * 18.22204 * 7 2 1 10 10 C 1.34772 * 120.00345 * 44.28039 * 9 7 2 11 11 O 1.21294 * 120.00007 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00242 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47123 * 180.02562 * 12 10 9 14 14 C 1.44540 * 120.61605 * 269.74574 * 13 12 10 15 15 C 1.53432 * 111.72075 * 180.27437 * 14 13 12 16 16 S 1.82069 * 103.93155 * 0.02562 * 15 14 13 17 17 C 1.33002 * 120.61585 * 90.02544 * 13 12 10 18 18 O 1.21621 * 125.20126 * 359.75956 * 17 13 12 19 19 C 1.46507 * 119.99674 * 224.28533 * 9 7 2 20 20 C 1.52997 * 117.50028 * 3.21895 * 19 9 7 21 21 C 1.52995 * 60.00118 * 252.51342 * 20 19 9 22 22 H 0.97006 * 119.99956 * 354.93116 * 1 2 3 23 23 H 1.08999 * 109.46378 * 60.00201 * 12 10 9 24 24 H 1.08998 * 109.46713 * 300.00327 * 12 10 9 25 25 H 1.08998 * 109.04027 * 300.87232 * 14 13 12 26 26 H 1.09001 * 109.04352 * 59.68271 * 14 13 12 27 27 H 1.08998 * 110.53578 * 241.39004 * 15 14 13 28 28 H 1.08996 * 110.53204 * 118.61245 * 15 14 13 29 29 H 1.08996 * 115.54887 * 148.93393 * 19 9 7 30 30 H 1.09008 * 117.50019 * 0.02562 * 20 19 9 31 31 H 1.08997 * 117.50192 * 145.02143 * 20 19 9 32 32 H 1.08994 * 117.50205 * 252.50974 * 21 20 19 33 33 H 1.09003 * 117.51807 * 107.48122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0482 -1.2267 0.2930 9 7 1.3748 -2.3610 -0.3702 10 6 0.5784 -2.3748 -1.4573 11 8 0.4228 -1.3631 -2.1081 12 6 -0.1189 -3.6473 -1.8645 13 7 -0.9179 -3.4027 -3.0678 14 6 -2.2955 -2.9781 -2.9630 15 6 -2.9380 -2.7891 -4.3434 16 16 -1.6036 -3.2080 -5.5091 17 6 -0.3907 -3.5726 -4.2770 18 8 0.7514 -3.9262 -4.5006 19 6 1.5631 -3.5831 0.4155 20 6 2.4182 -3.4851 1.6804 21 6 2.9641 -4.1975 0.4414 22 1 -0.4850 0.8368 0.0742 23 1 -0.7707 -3.9789 -1.0563 24 1 0.6235 -4.4179 -2.0721 25 1 -2.8580 -3.7294 -2.4088 26 1 -2.3363 -2.0341 -2.4196 27 1 -3.2545 -1.7550 -4.4795 28 1 -3.7816 -3.4678 -4.4686 29 1 0.7138 -4.2660 0.4334 30 1 2.8403 -2.5111 1.9284 31 1 2.1313 -4.1034 2.5310 32 1 3.0364 -5.2844 0.4768 33 1 3.7456 -3.6926 -0.1264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = -36.468735 kcal Electronic energy + Delta-G solvation = -19233.330484 eV Core-core repulsion = 16193.394694 eV Total energy + Delta-G solvation = -3039.935790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.35513 -39.98217 -37.99868 -37.40684 -34.79819 -33.09091 -32.27340 -29.40626 -26.82858 -25.53670 -23.27001 -22.91200 -22.40089 -20.89383 -19.24397 -18.73249 -17.92989 -17.80698 -17.02619 -16.59591 -16.15379 -15.60865 -15.50955 -15.27411 -15.20870 -14.99582 -14.56345 -13.84704 -13.77340 -13.25937 -13.13812 -12.90932 -12.78202 -12.58011 -12.22885 -12.10703 -11.97710 -11.68218 -11.25172 -11.06262 -10.83778 -10.53016 -9.85908 -9.23002 -8.98933 -8.24429 -6.00327 0.03689 0.88219 1.10803 1.31309 1.40030 1.46057 2.05704 2.19839 2.35767 3.06364 3.10455 3.30860 3.33899 3.86101 4.01119 4.07269 4.17660 4.27907 4.32188 4.45695 4.47531 4.55655 4.72815 4.90399 4.92519 5.06700 5.27247 5.45628 5.49412 5.87216 6.17477 6.48283 6.99621 7.14959 7.65492 8.28915 8.84118 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.007171 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.264722 B = 3903.459502 C = 4707.911547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.356 4.356 8 H 0.072 0.928 9 N -0.441 5.441 10 C 0.452 3.548 11 O -0.579 6.579 12 C 0.114 3.886 13 N -0.582 5.582 14 C 0.093 3.907 15 C -0.075 4.075 16 S -0.200 6.200 17 C 0.534 3.466 18 O -0.542 6.542 19 C 0.042 3.958 20 C -0.164 4.164 21 C -0.189 4.189 22 H 0.260 0.740 23 H 0.135 0.865 24 H 0.106 0.894 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.234 -9.953 -0.207 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.179 4.179 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.484 4.484 8 H 0.089 0.911 9 N -0.162 5.162 10 C 0.239 3.761 11 O -0.459 6.459 12 C -0.015 4.015 13 N -0.316 5.316 14 C -0.030 4.030 15 C -0.223 4.223 16 S 0.025 5.975 17 C 0.213 3.787 18 O -0.423 6.423 19 C -0.063 4.063 20 C -0.202 4.202 21 C -0.227 4.227 22 H 0.069 0.931 23 H 0.153 0.847 24 H 0.124 0.876 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.180 0.820 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.874 -9.509 -1.930 12.496 hybrid contribution 0.738 1.377 1.212 1.977 sum -7.137 -8.133 -0.718 10.844 Atomic orbital electron populations 1.69880 1.07482 1.27421 1.44943 1.25902 0.95649 1.02039 0.94327 0.85371 0.79200 0.79428 0.77184 1.18892 1.22477 1.19250 1.19046 0.94635 0.85349 1.49354 0.91055 1.42978 1.43539 1.07948 1.21745 1.21021 0.83550 0.90294 0.81186 1.90504 1.64348 1.36612 1.54478 1.21429 0.96499 0.95928 0.87669 1.47529 1.13587 1.65359 1.05092 1.21669 0.79573 1.03557 0.98232 1.24446 0.97997 1.09424 0.90459 1.87092 1.11356 1.84238 1.14783 1.22092 0.90340 0.79731 0.86488 1.90787 1.18724 1.51971 1.80850 1.22135 0.95204 0.90346 0.98600 1.23105 1.03155 1.02003 0.91909 1.23331 0.97060 1.00595 1.01743 0.93097 0.84720 0.87613 0.85075 0.90828 0.85573 0.81996 0.84565 0.90248 0.85943 0.85614 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.27 11.74 21.66 0.25 -50.02 16 2 C 0.03 1.56 4.38 84.93 0.37 1.93 16 3 Si 0.96 46.04 29.59 68.60 2.03 48.07 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.36 -19.66 7.92 84.04 0.67 -18.99 16 8 H 0.07 3.90 7.26 -2.91 -0.02 3.88 16 9 N -0.44 -21.70 2.83 -613.13 -1.74 -23.44 16 10 C 0.45 22.64 7.03 87.66 0.62 23.25 16 11 O -0.58 -34.72 14.19 -3.07 -0.04 -34.76 16 12 C 0.11 4.17 4.67 85.64 0.40 4.57 16 13 N -0.58 -20.31 2.26 -844.70 -1.91 -22.22 16 14 C 0.09 2.31 6.80 86.89 0.59 2.90 16 15 C -0.08 -1.45 7.42 72.13 0.54 -0.91 16 16 S -0.20 -6.05 23.25 -56.49 -1.31 -7.36 16 17 C 0.53 21.21 8.26 130.07 1.07 22.29 16 18 O -0.54 -25.94 17.28 -4.10 -0.07 -26.01 16 19 C 0.04 1.53 5.87 44.99 0.26 1.80 16 20 C -0.16 -5.38 9.80 30.59 0.30 -5.08 16 21 C -0.19 -5.98 10.36 30.59 0.32 -5.66 16 22 H 0.26 14.57 8.32 -92.70 -0.77 13.80 16 23 H 0.14 3.76 7.50 -2.39 -0.02 3.74 16 24 H 0.11 3.75 7.62 -2.39 -0.02 3.73 16 25 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.14 3.96 6.96 -2.39 -0.02 3.94 16 30 H 0.08 3.07 6.72 -2.38 -0.02 3.05 16 31 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -81.32 296.36 3.46 -77.86 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.12 Total: 11.79 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 5.14 Total: 26.10 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -3.40 Total: -95.68 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.11 Total: -60.77 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.31 Total: -7.36 kcal Total: -81.32 3.46 -77.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.387 kcal (2) G-P(sol) polarization free energy of solvation -81.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds