Wall clock time and date at job start Mon Mar 30 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47068 * 2 1 4 4 C 1.33231 * 120.00392 * 94.00950 * 3 2 1 5 5 H 1.07997 * 120.00242 * 168.13592 * 4 3 2 6 6 C 1.46792 * 119.99457 * 348.14040 * 4 3 2 7 7 N 1.29315 * 120.00258 * 338.51454 * 6 4 3 8 8 Si 1.86805 * 119.99804 * 158.51649 * 6 4 3 9 9 H 1.48496 * 109.47260 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47083 * 119.99871 * 8 6 4 11 11 H 1.48506 * 109.47003 * 239.99741 * 8 6 4 12 12 C 1.34778 * 120.00456 * 274.01144 * 3 2 1 13 13 O 1.21645 * 120.00843 * 185.53969 * 12 3 2 14 14 C 1.46332 * 119.99498 * 5.53730 * 12 3 2 15 15 C 1.36897 * 125.46560 * 186.78790 * 14 12 3 16 16 C 1.37331 * 113.27760 * 179.97438 * 15 14 12 17 17 C 1.33949 * 115.11716 * 0.02562 * 16 15 14 18 18 N 1.48021 * 124.51657 * 179.97438 * 17 16 15 19 19 O 1.31697 * 119.99525 * 359.97438 * 18 17 16 20 20 O 1.31702 * 119.99907 * 179.72290 * 18 17 16 21 21 S 1.70617 * 110.96948 * 0.25704 * 17 16 15 22 22 H 1.08999 * 109.47506 * 299.99888 * 1 2 3 23 23 H 1.09001 * 109.47231 * 60.00154 * 1 2 3 24 24 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47045 * 239.99855 * 2 1 3 26 26 H 1.09001 * 109.47231 * 119.99846 * 2 1 3 27 27 H 0.96996 * 120.00272 * 180.02562 * 7 6 4 28 28 H 1.08005 * 123.35983 * 0.04541 * 15 14 12 29 29 H 1.07993 * 122.44309 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3164 1.9824 1.1509 5 1 2.8521 2.9201 1.1474 6 6 1.9168 1.3701 2.4238 7 7 0.9517 0.5098 2.4527 8 14 2.8022 1.8338 4.0020 9 1 3.8605 2.8311 3.7011 10 1 1.8306 2.4166 4.9618 11 1 3.4199 0.6216 4.5975 12 6 2.1659 2.0438 -1.1643 13 8 2.6655 3.1529 -1.1739 14 6 1.7254 1.4290 -2.4169 15 6 1.9380 1.9384 -3.6697 16 6 1.4168 1.1549 -4.6699 17 6 0.7976 0.0417 -4.2558 18 7 0.1625 -0.9485 -5.1542 19 8 0.1830 -0.7630 -6.4579 20 8 -0.4187 -2.0175 -4.6502 21 16 0.8315 -0.0790 -2.5542 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6874 0.1055 3.2938 28 1 2.4641 2.8636 -3.8531 29 1 1.5002 1.4170 -5.7142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231187.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:12 Heat of formation + Delta-G solvation = 47.500135 kcal Electronic energy + Delta-G solvation = -18380.983513 eV Core-core repulsion = 15208.855791 eV Total energy + Delta-G solvation = -3172.127721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.51636 -38.42970 -36.92238 -35.55314 -33.58002 -33.27733 -30.85697 -29.74194 -27.05804 -25.13369 -23.28962 -22.98597 -21.17814 -19.12497 -18.45319 -17.78271 -17.08624 -16.69299 -15.63808 -15.35359 -15.25457 -14.75166 -14.45895 -13.98190 -13.61871 -12.92300 -12.78753 -12.64392 -12.05891 -11.96203 -11.70826 -11.55051 -11.04093 -10.96548 -10.78408 -10.64080 -10.58863 -10.22122 -10.09030 -9.97820 -9.01143 -8.89831 -8.61641 -8.02342 -7.67226 -4.22549 -0.45629 1.20339 1.36606 2.16232 2.31252 2.48563 2.62725 2.71507 2.78871 3.28179 3.53238 3.97848 4.23563 5.08792 5.35622 5.42016 5.62920 5.76028 5.85384 6.01070 6.09292 6.22923 6.36193 6.43132 6.47867 6.65263 6.90083 7.10770 7.35803 7.50524 8.11869 8.31808 9.13515 9.40761 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.005718 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.187443 B = 4895.315613 C = 5560.524119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 N -0.362 5.362 4 C -0.224 4.224 5 H 0.140 0.860 6 C 0.032 3.968 7 N -0.753 5.753 8 Si 0.948 3.052 9 H -0.250 1.250 10 H -0.265 1.265 11 H -0.264 1.264 12 C 0.432 3.568 13 O -0.593 6.593 14 C -0.168 4.168 15 C -0.148 4.148 16 C -0.045 4.045 17 C -0.250 4.250 18 N 0.049 4.951 19 O -0.245 6.245 20 O -0.248 6.248 21 S 0.296 5.704 22 H 0.109 0.891 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.302 0.698 28 H 0.156 0.844 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -1.230 4.667 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.044 4.044 3 N -0.071 5.071 4 C -0.365 4.365 5 H 0.158 0.842 6 C -0.191 4.191 7 N -0.383 5.383 8 Si 0.769 3.231 9 H -0.173 1.173 10 H -0.190 1.190 11 H -0.189 1.189 12 C 0.231 3.769 13 O -0.483 6.483 14 C -0.294 4.294 15 C -0.177 4.177 16 C -0.079 4.079 17 C -0.460 4.460 18 N 0.497 4.503 19 O -0.418 6.418 20 O -0.419 6.419 21 S 0.564 5.436 22 H 0.127 0.873 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.174 0.826 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.617 -1.744 5.739 6.030 hybrid contribution 0.471 0.640 -0.959 1.245 sum 1.088 -1.104 4.780 5.025 Atomic orbital electron populations 1.22365 0.94297 1.02776 1.03471 1.22185 0.96793 0.82893 1.02517 1.43601 1.45847 1.10971 1.06676 1.21912 1.26783 1.06285 0.81550 0.84233 1.27572 0.95051 0.94887 1.01565 1.69056 1.18386 1.19545 1.31296 0.85468 0.80103 0.80186 0.77301 1.17277 1.19013 1.18892 1.16290 0.92089 0.87124 0.81416 1.90675 1.53103 1.20086 1.84458 1.25272 1.06310 0.98875 0.98966 1.20123 1.05814 1.02727 0.88995 1.19845 0.94548 0.91426 1.02049 1.25275 1.21027 0.99986 0.99729 1.49255 0.97970 1.00883 1.02206 1.96182 1.69250 1.85004 0.91336 1.96204 1.48899 1.16830 1.79931 1.84531 1.50051 1.19525 0.89487 0.87304 0.93226 0.91705 0.91674 0.86990 0.88412 0.82637 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.30 37.16 0.31 -2.53 15 2 C 0.08 1.44 4.82 -4.05 -0.02 1.42 15 3 N -0.36 -7.49 2.53 -114.88 -0.29 -7.78 15 4 C -0.22 -4.59 9.66 -13.49 -0.13 -4.72 15 5 H 0.14 3.01 7.31 -52.49 -0.38 2.63 15 6 C 0.03 0.56 5.08 -15.15 -0.08 0.48 15 7 N -0.75 -12.89 8.31 56.00 0.47 -12.43 15 8 Si 0.95 13.63 29.69 -169.99 -5.05 8.58 15 9 H -0.25 -3.75 7.11 56.52 0.40 -3.34 15 10 H -0.27 -3.82 7.11 56.52 0.40 -3.42 15 11 H -0.26 -3.74 7.11 56.52 0.40 -3.33 15 12 C 0.43 9.67 7.53 -13.01 -0.10 9.57 15 13 O -0.59 -15.09 16.40 5.24 0.09 -15.01 15 14 C -0.17 -3.36 6.14 -36.81 -0.23 -3.59 15 15 C -0.15 -2.78 10.02 -40.40 -0.40 -3.19 15 16 C -0.04 -0.83 9.77 -41.42 -0.40 -1.23 15 17 C -0.25 -5.03 7.34 -11.14 -0.08 -5.11 15 18 N 0.05 1.10 4.98 32.58 0.16 1.26 15 19 O -0.25 -5.54 19.61 -31.57 -0.62 -6.16 15 20 O -0.25 -5.61 19.73 -31.57 -0.62 -6.23 15 21 S 0.30 5.40 14.67 -107.50 -1.58 3.83 15 22 H 0.11 1.95 5.92 -51.93 -0.31 1.64 15 23 H 0.05 0.86 5.50 -31.57 -0.17 0.69 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.07 1.11 4.89 -25.54 -0.12 0.99 15 26 H 0.11 1.93 6.10 -51.93 -0.32 1.62 15 27 H 0.30 4.55 8.26 -40.82 -0.34 4.22 15 28 H 0.16 2.76 8.06 -52.48 -0.42 2.34 15 29 H 0.15 2.44 7.97 -52.49 -0.42 2.02 15 LS Contribution 268.07 15.07 4.04 4.04 Total: -1.00 -25.99 268.07 -6.24 -32.23 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -1.70 Total: 6.56 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.13 Total: -8.90 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.34 Total: -18.94 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.16 Total: -27.39 kcal Atomic # 14 Polarization: 13.63 SS G_CDS: -5.05 Total: 8.58 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.58 Total: 3.83 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.99 -6.24 -32.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231187.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.733 kcal (2) G-P(sol) polarization free energy of solvation -25.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds