Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99657 * 2 1 4 4 H 1.48506 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47341 * 299.99569 * 3 2 1 6 6 H 1.48501 * 109.47044 * 60.00220 * 3 2 1 7 7 C 1.37880 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99718 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46819 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99538 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00271 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99306 * 179.97438 * 11 10 9 14 14 O 1.42904 * 109.46514 * 179.97438 * 13 11 10 15 15 C 1.35940 * 116.99678 * 180.02562 * 14 13 11 16 16 C 1.39056 * 120.47722 * 0.19419 * 15 14 13 17 17 C 1.38596 * 118.38705 * 180.24424 * 16 15 14 18 18 C 1.38205 * 119.24949 * 359.52341 * 17 16 15 19 19 N 1.31883 * 120.89574 * 0.27901 * 18 17 16 20 20 C 1.31916 * 121.76671 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.67496 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99914 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46918 * 60.00185 * 9 7 2 24 24 H 1.08998 * 109.47465 * 300.00240 * 9 7 2 25 25 H 0.96992 * 120.00277 * 0.02562 * 10 9 7 26 26 H 1.09004 * 109.46949 * 60.01015 * 13 11 10 27 27 H 1.08992 * 109.47415 * 300.00189 * 13 11 10 28 28 H 1.07993 * 120.80831 * 0.04528 * 16 15 14 29 29 H 1.08002 * 120.37777 * 179.80807 * 17 16 15 30 30 H 1.07997 * 119.55172 * 180.25856 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7334 -6.0287 0.0005 14 8 2.0189 -7.2662 0.0018 15 6 2.7593 -8.4063 0.0020 16 6 4.1485 -8.3450 0.0050 17 6 4.8606 -9.5341 -0.0001 18 6 4.1730 -10.7329 0.0021 19 7 2.8544 -10.7573 0.0034 20 6 2.1393 -9.6488 0.0032 21 17 0.4059 -9.7442 0.0043 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 3.1568 -3.4354 0.0009 26 1 3.3606 -5.9708 0.8901 27 1 3.3594 -5.9710 -0.8899 28 1 4.6602 -7.3940 0.0080 29 1 5.9405 -9.5240 -0.0010 30 1 4.7229 -11.6624 0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083119374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = -70.254351 kcal Electronic energy + Delta-G solvation = -17277.095927 eV Core-core repulsion = 14097.818281 eV Total energy + Delta-G solvation = -3179.277645 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.81664 -40.59365 -39.03225 -37.57905 -36.19005 -34.41109 -33.23360 -31.84584 -30.32763 -28.39181 -25.11415 -24.48008 -23.90942 -21.59867 -19.62182 -19.15510 -18.11666 -18.04035 -17.55632 -17.22155 -16.93654 -16.09190 -16.02382 -15.45987 -15.11056 -14.99660 -14.67625 -14.08246 -13.92225 -13.74126 -12.97663 -12.88205 -12.77147 -12.75133 -12.45272 -12.26374 -12.20915 -11.46183 -10.87821 -10.82860 -10.77942 -10.75515 -9.91753 -9.46615 -8.29185 -6.46050 -0.11605 0.11349 0.87959 1.43444 1.45983 1.50744 1.59968 1.60191 2.36758 2.58636 2.72070 3.06493 3.46799 3.56596 3.84908 3.88454 3.94832 4.06954 4.09815 4.38249 4.84632 5.00358 5.09112 5.21898 5.33842 5.43645 5.63747 5.82729 5.99656 6.64406 6.67690 6.81613 7.22567 7.40965 8.83280 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038402 B = 0.003404 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.953321 B = 8223.745682 C = 8932.251989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.249 1.249 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.494 3.506 12 O -0.590 6.590 13 C 0.049 3.951 14 O -0.306 6.306 15 C 0.082 3.918 16 C -0.150 4.150 17 C -0.107 4.107 18 C 0.071 3.929 19 N -0.470 5.470 20 C 0.112 3.888 21 Cl -0.045 7.045 22 H 0.268 0.732 23 H -0.012 1.012 24 H -0.012 1.012 25 H 0.415 0.585 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.186 0.814 29 H 0.194 0.806 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.257 -17.751 0.002 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.108 0.892 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.280 3.720 12 O -0.470 6.470 13 C -0.029 4.029 14 O -0.217 6.217 15 C 0.032 3.968 16 C -0.176 4.176 17 C -0.126 4.126 18 C -0.087 4.087 19 N -0.182 5.182 20 C -0.052 4.052 21 Cl -0.017 7.017 22 H 0.077 0.923 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.251 0.749 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.203 0.797 29 H 0.211 0.789 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 15.441 -18.546 0.004 24.133 hybrid contribution 0.038 1.749 -0.001 1.749 sum 15.480 -16.797 0.003 22.842 Atomic orbital electron populations 1.70153 1.08400 1.28531 1.50052 1.26097 0.95743 1.04044 0.93914 0.85090 0.79271 0.77223 0.77493 1.17174 1.20709 1.20721 1.21650 0.94528 0.90196 1.52701 0.89178 1.18600 0.88699 0.84117 0.94313 1.45973 1.11645 1.04562 1.72654 1.20890 0.89456 0.84938 0.76705 1.90716 1.19549 1.85354 1.51391 1.22743 0.93121 0.79606 1.07441 1.86264 1.35058 1.12248 1.88139 1.19852 0.92200 0.85804 0.98906 1.22265 0.89975 1.03303 1.02082 1.22623 1.04017 0.90755 0.95201 1.23355 0.87151 1.00981 0.97184 1.67070 1.10518 1.28405 1.12176 1.21035 0.87808 0.88293 1.08043 1.98409 1.07947 1.98552 1.96754 0.92294 0.99360 0.99354 0.74861 0.84823 0.84816 0.79679 0.78903 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.99 40.99 29.54 68.60 2.03 43.01 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -28.79 9.28 25.60 0.24 -28.55 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.10 5.43 85.63 0.46 14.56 16 10 N -0.70 -27.04 5.55 -466.79 -2.59 -29.63 16 11 C 0.49 18.89 7.91 87.66 0.69 19.58 16 12 O -0.59 -30.15 16.50 16.02 0.26 -29.88 16 13 C 0.05 1.13 5.24 71.24 0.37 1.51 16 14 O -0.31 -9.18 9.14 -73.83 -0.67 -9.85 16 15 C 0.08 1.97 6.70 22.62 0.15 2.12 16 16 C -0.15 -2.02 9.14 22.55 0.21 -1.82 16 17 C -0.11 -0.96 10.10 22.35 0.23 -0.74 16 18 C 0.07 0.96 11.18 84.68 0.95 1.91 16 19 N -0.47 -10.99 10.34 -186.33 -1.93 -12.91 16 20 C 0.11 3.05 7.29 84.83 0.62 3.67 16 21 Cl -0.04 -1.40 28.66 -2.72 -0.08 -1.48 16 22 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.41 12.10 8.32 -92.71 -0.77 11.33 16 26 H 0.13 2.00 7.69 -2.38 -0.02 1.98 16 27 H 0.13 2.00 7.71 -2.39 -0.02 1.98 16 28 H 0.19 1.13 6.45 -2.91 -0.02 1.11 16 29 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 30 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -81.51 290.51 2.10 -79.40 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 0.42 Total: 3.87 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 4.38 Total: 12.78 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.23 Total: -97.87 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.41 Total: -39.73 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -81.51 2.10 -79.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083119374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.150 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds