Wall clock time and date at job start Mon Mar 30 2020 00:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 117.00218 * 2 1 4 4 O 1.20820 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99980 * 179.97438 * 3 2 1 6 6 C 1.50700 * 109.47126 * 179.97438 * 5 3 2 7 7 C 1.34215 * 122.12452 * 124.99689 * 6 5 3 8 8 S 1.76249 * 108.19620 * 179.97438 * 7 6 5 9 9 C 1.76169 * 89.86664 * 0.02562 * 8 7 6 10 10 N 1.37921 * 125.43734 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99929 * 0.02927 * 10 9 8 12 12 O 1.21848 * 120.00053 * 359.97438 * 11 10 9 13 13 C 1.41241 * 120.00016 * 179.97438 * 11 10 9 14 14 H 1.07998 * 119.99436 * 0.02562 * 13 11 10 15 15 C 1.40151 * 119.99954 * 179.97438 * 13 11 10 16 16 N 1.30621 * 120.00566 * 0.02562 * 15 13 11 17 17 Si 1.86810 * 119.99726 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46874 * 60.00394 * 17 15 13 19 19 H 1.48502 * 109.46872 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46823 * 300.00331 * 17 15 13 21 21 N 1.30350 * 109.12268 * 0.02562 * 9 8 7 22 22 H 1.09001 * 109.46849 * 300.00763 * 1 2 3 23 23 H 1.08998 * 109.46302 * 60.00226 * 1 2 3 24 24 H 1.08992 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47069 * 59.99788 * 5 3 2 26 26 H 1.08998 * 109.47234 * 299.99816 * 5 3 2 27 27 H 1.07999 * 125.90215 * 359.97438 * 7 6 5 28 28 H 0.96992 * 119.99976 * 180.02562 * 10 9 8 29 29 H 0.96991 * 120.00278 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 3.9937 2.7199 -0.0002 7 6 4.8209 3.2201 0.9310 8 16 5.0734 4.9291 0.5820 9 6 4.0123 4.7958 -0.8179 10 7 3.6897 5.8249 -1.6777 11 6 4.2010 7.0556 -1.4775 12 8 4.9480 7.2594 -0.5366 13 6 3.8711 8.1093 -2.3582 14 1 3.2086 7.9288 -3.1919 15 6 4.4024 9.3893 -2.1497 16 7 5.2032 9.6078 -1.1412 17 14 3.9654 10.7831 -3.3143 18 1 2.4961 10.9979 -3.2997 19 1 4.6521 12.0257 -2.8788 20 1 4.4011 10.4335 -4.6902 21 7 3.5799 3.5696 -0.9108 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.9564 0.7804 -0.8891 26 1 3.9557 0.7809 0.8908 27 1 5.2565 2.6703 1.7522 28 1 3.0948 5.6628 -2.4264 29 1 5.5706 10.4937 -0.9967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083366814.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:24 Heat of formation + Delta-G solvation = -77.074304 kcal Electronic energy + Delta-G solvation = -17677.509042 eV Core-core repulsion = 14499.979367 eV Total energy + Delta-G solvation = -3177.529674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37060 -38.99156 -37.84568 -36.21246 -33.84774 -32.70427 -31.21376 -28.46178 -27.18305 -26.79763 -23.50284 -21.45599 -20.37724 -19.43653 -17.55913 -17.36354 -16.92426 -16.47791 -16.19878 -15.66335 -15.49953 -14.35723 -14.27670 -13.65328 -13.60620 -13.32960 -12.88317 -12.52258 -12.26902 -12.01013 -11.99630 -11.55646 -11.20178 -10.88574 -10.73789 -10.62950 -10.44471 -10.25785 -9.74460 -9.12130 -8.87654 -8.32514 -8.06205 -7.16432 -6.60071 -5.14285 1.59903 2.07713 2.42654 2.62775 2.89364 2.98917 3.04318 3.06435 3.56864 3.79531 4.13907 4.23215 4.84471 5.06735 5.12644 5.17944 5.23265 5.44376 5.49130 5.51196 5.82845 6.17393 6.43666 6.67281 7.04675 7.49871 7.58080 7.78673 7.95429 8.47779 8.58072 8.98753 10.05464 10.28159 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.004389 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.116868 B = 6378.419610 C = 7040.514728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.479 6.479 5 C -0.029 4.029 6 C 0.098 3.902 7 C -0.355 4.355 8 S 0.192 5.808 9 C 0.322 3.678 10 N -0.635 5.635 11 C 0.530 3.470 12 O -0.548 6.548 13 C -0.521 4.521 14 H 0.077 0.923 15 C 0.086 3.914 16 N -0.737 5.737 17 Si 0.921 3.079 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.264 1.264 21 N -0.538 5.538 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.161 0.839 28 H 0.407 0.593 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -13.351 1.312 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.363 6.363 5 C -0.070 4.070 6 C -0.037 4.037 7 C -0.497 4.497 8 S 0.442 5.558 9 C -0.047 4.047 10 N -0.283 5.283 11 C 0.341 3.659 12 O -0.433 6.433 13 C -0.557 4.557 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.364 5.364 17 Si 0.744 3.256 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.188 1.188 21 N -0.263 5.263 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.179 0.821 28 H 0.243 0.757 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.927 -11.874 2.058 12.402 hybrid contribution -1.083 -0.302 -0.969 1.484 sum -4.010 -12.176 1.088 12.865 Atomic orbital electron populations 1.23184 0.76804 1.03165 1.02529 1.86484 1.23121 1.34036 1.84971 1.23637 0.91975 0.81250 0.73254 1.90729 1.66653 1.36064 1.42882 1.19787 0.87731 0.93538 1.05910 1.18781 0.97791 0.94285 0.92814 1.27132 1.12052 1.03059 1.07417 1.86100 1.45583 1.01207 1.22958 1.24312 0.95782 0.89526 0.95110 1.43662 1.48980 1.07595 1.28020 1.17214 0.81785 0.79577 0.87335 1.90611 1.39894 1.79285 1.33482 1.19837 1.30012 0.93201 1.12601 0.90452 1.25806 0.93117 0.99697 0.95274 1.69961 1.20016 1.22881 1.23521 0.86196 0.79717 0.79123 0.80563 1.18818 1.20116 1.18814 1.66179 1.30005 1.00197 1.29933 0.92145 0.91999 0.88441 0.86750 0.86688 0.82129 0.75701 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 15 2 O -0.37 -4.66 10.57 -39.27 -0.41 -5.07 15 3 C 0.46 7.00 7.92 36.00 0.29 7.29 15 4 O -0.48 -9.33 15.17 -18.75 -0.28 -9.62 15 5 C -0.03 -0.39 6.29 -29.04 -0.18 -0.58 15 6 C 0.10 1.78 5.62 -84.26 -0.47 1.31 15 7 C -0.35 -6.22 11.05 29.31 0.32 -5.89 15 8 S 0.19 4.13 20.53 -107.50 -2.21 1.92 15 9 C 0.32 7.40 8.37 -87.80 -0.74 6.66 15 10 N -0.63 -14.96 5.35 -14.63 -0.08 -15.03 15 11 C 0.53 14.32 7.51 -15.12 -0.11 14.20 15 12 O -0.55 -16.20 12.36 5.06 0.06 -16.14 15 13 C -0.52 -13.63 9.28 -37.72 -0.35 -13.98 15 14 H 0.08 1.82 7.85 -52.49 -0.41 1.41 15 15 C 0.09 2.20 5.50 -17.35 -0.10 2.10 15 16 N -0.74 -20.18 11.72 55.56 0.65 -19.53 15 17 Si 0.92 18.50 29.56 -169.99 -5.02 13.48 15 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 21 N -0.54 -11.48 9.66 -10.10 -0.10 -11.58 15 22 H 0.06 0.61 8.13 -51.93 -0.42 0.18 15 23 H 0.06 0.64 8.13 -51.93 -0.42 0.22 15 24 H 0.10 0.64 8.14 -51.93 -0.42 0.21 15 25 H 0.11 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.12 1.12 8.01 -51.93 -0.42 0.71 15 27 H 0.16 2.22 8.06 -52.49 -0.42 1.79 15 28 H 0.41 8.53 8.77 -40.82 -0.36 8.17 15 29 H 0.28 6.86 8.29 -40.82 -0.34 6.52 15 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -33.41 281.86 -5.85 -39.26 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -2.43 Total: 5.51 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.28 Total: 12.55 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.48 Total: -46.14 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.64 Total: -30.82 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.21 Total: 1.92 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.41 -5.85 -39.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083366814.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.815 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds