Wall clock time and date at job start Mon Mar 30 2020 00:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45207 * 109.46869 * 2 1 4 4 C 1.34808 * 116.99783 * 180.02562 * 3 2 1 5 5 O 1.21551 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.47130 * 119.99491 * 180.02562 * 4 3 2 7 7 C 1.36417 * 122.59263 * 179.97438 * 6 4 3 8 8 S 1.71004 * 109.01289 * 179.97438 * 7 6 4 9 9 C 1.75958 * 90.66939 * 0.02562 * 8 7 6 10 10 N 1.38166 * 125.19589 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99941 * 359.74091 * 10 9 8 12 12 O 1.21793 * 120.00078 * 0.28190 * 11 10 9 13 13 C 1.41574 * 120.00019 * 180.27902 * 11 10 9 14 14 H 1.08001 * 119.99734 * 0.02562 * 13 11 10 15 15 C 1.40158 * 119.99734 * 179.97438 * 13 11 10 16 16 N 1.30614 * 120.00340 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99688 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47118 * 60.00485 * 17 15 13 19 19 H 1.48498 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47259 * 300.00387 * 17 15 13 21 21 N 1.29747 * 109.60684 * 0.22697 * 9 8 7 22 22 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47286 * 300.00130 * 1 2 3 24 24 H 1.08996 * 109.47397 * 60.00234 * 1 2 3 25 25 H 1.08998 * 109.47404 * 240.00353 * 2 1 3 26 26 H 1.08996 * 109.47397 * 119.99766 * 2 1 3 27 27 H 1.08007 * 125.49272 * 0.02562 * 7 6 4 28 28 H 0.97001 * 120.00271 * 180.02562 * 10 9 8 29 29 H 0.97005 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0909 0.5817 -0.0005 6 6 3.9127 2.9053 0.0000 7 6 5.2556 3.1452 0.0000 8 16 5.5197 4.8347 0.0000 9 6 3.7846 5.1268 0.0007 10 7 3.1867 6.3724 0.0016 11 6 3.9474 7.4850 0.0071 12 8 5.1618 7.3924 0.0062 13 6 3.3347 8.7613 0.0139 14 1 2.2578 8.8433 0.0151 15 6 4.1258 9.9183 0.0203 16 7 5.4282 9.8190 0.0193 17 14 3.3175 11.6023 0.0285 18 1 2.4717 11.7395 1.2414 19 1 4.3654 12.6544 0.0338 20 1 2.4727 11.7519 -1.1836 21 7 3.1523 3.9938 0.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 6.0275 2.3898 -0.0008 28 1 2.2195 6.4462 0.0023 29 1 5.9757 10.6198 0.0233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083366817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:47 Heat of formation + Delta-G solvation = -103.905249 kcal Electronic energy + Delta-G solvation = -17528.509149 eV Core-core repulsion = 14349.815998 eV Total energy + Delta-G solvation = -3178.693151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72600 -40.61193 -39.49810 -37.68684 -35.53105 -34.60808 -32.62087 -31.00782 -28.93228 -27.14745 -24.53795 -23.46820 -22.29496 -21.35566 -20.07076 -18.89723 -18.32692 -17.68620 -17.57806 -17.24691 -17.19971 -16.22020 -16.04286 -15.17944 -14.92013 -14.59095 -14.33308 -14.09689 -13.62793 -13.33740 -12.95896 -12.89498 -12.78777 -12.70151 -12.50414 -12.07507 -11.82078 -11.73716 -11.53686 -10.99599 -10.85227 -10.35059 -10.13408 -9.08391 -8.49935 -7.13544 -0.45304 0.17894 0.66402 0.82448 1.44007 1.44192 1.58447 1.72160 2.02400 2.11818 2.36297 2.38322 3.44938 3.46724 4.00922 4.06412 4.13659 4.22893 4.33540 4.65829 4.85337 4.92196 5.07696 5.16562 5.34505 5.59507 5.67995 5.88011 6.33507 6.63458 6.72462 7.09812 8.06578 8.40842 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.034932 B = 0.004226 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.366078 B = 6624.038087 C = 7404.944848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.347 6.347 4 C 0.554 3.446 5 O -0.524 6.524 6 C 0.019 3.981 7 C -0.283 4.283 8 S 0.287 5.713 9 C 0.271 3.729 10 N -0.631 5.631 11 C 0.518 3.482 12 O -0.584 6.584 13 C -0.542 4.542 14 H 0.099 0.901 15 C 0.037 3.963 16 N -0.784 5.784 17 Si 1.002 2.998 18 H -0.254 1.254 19 H -0.272 1.272 20 H -0.254 1.254 21 N -0.509 5.509 22 H 0.108 0.892 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.203 0.797 28 H 0.419 0.581 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -9.720 -0.024 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.263 6.263 4 C 0.397 3.603 5 O -0.414 6.414 6 C -0.116 4.116 7 C -0.428 4.428 8 S 0.540 5.460 9 C -0.099 4.099 10 N -0.281 5.281 11 C 0.330 3.670 12 O -0.472 6.472 13 C -0.577 4.577 14 H 0.117 0.883 15 C -0.184 4.184 16 N -0.411 5.411 17 Si 0.821 3.179 18 H -0.178 1.178 19 H -0.196 1.196 20 H -0.178 1.178 21 N -0.235 5.235 22 H 0.126 0.874 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.220 0.780 28 H 0.257 0.743 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.098 -9.247 -0.020 10.559 hybrid contribution -0.952 -0.414 0.004 1.038 sum -6.051 -9.661 -0.017 11.399 Atomic orbital electron populations 1.21825 0.90308 1.04546 1.03508 1.23446 0.97277 0.78672 1.03029 1.86717 1.22358 1.34089 1.83178 1.19931 0.81119 0.87356 0.71869 1.90804 1.61094 1.41510 1.48017 1.18995 0.89571 0.90627 1.12402 1.27648 0.99678 1.06703 1.08748 1.85392 1.03587 0.91576 1.65399 1.24596 0.95302 0.89677 1.00317 1.43354 1.11513 1.00431 1.72838 1.17606 0.86523 0.83798 0.79062 1.90543 1.14685 1.84172 1.57784 1.20423 0.96255 0.89239 1.51750 0.88285 1.26960 0.94908 1.05555 0.90987 1.70064 1.06921 1.32869 1.31269 0.84969 0.78486 0.73989 0.80455 1.17788 1.19622 1.17796 1.66867 1.36262 0.95916 1.24450 0.87354 0.91642 0.91632 0.90712 0.90718 0.78022 0.74263 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.29 71.98 0.74 -1.59 15 2 C 0.05 1.10 6.20 71.98 0.45 1.55 15 3 O -0.35 -11.14 10.14 -57.20 -0.58 -11.72 15 4 C 0.55 19.66 7.94 70.16 0.56 20.22 15 5 O -0.52 -18.94 16.47 19.67 0.32 -18.61 15 6 C 0.02 0.71 6.69 40.91 0.27 0.99 15 7 C -0.28 -9.90 10.63 67.39 0.72 -9.18 15 8 S 0.29 11.42 20.24 -56.49 -1.14 10.28 15 9 C 0.27 11.64 8.33 179.45 1.50 13.13 15 10 N -0.63 -27.72 5.36 -318.49 -1.71 -29.43 15 11 C 0.52 26.67 7.52 85.06 0.64 27.31 15 12 O -0.58 -33.21 12.34 -4.65 -0.06 -33.26 15 13 C -0.54 -26.81 9.30 23.56 0.22 -26.59 15 14 H 0.10 4.31 7.85 -2.91 -0.02 4.29 15 15 C 0.04 1.78 5.50 85.34 0.47 2.25 15 16 N -0.78 -41.67 11.73 21.85 0.26 -41.42 15 17 Si 1.00 35.55 29.56 68.60 2.03 37.58 15 18 H -0.25 -8.56 7.11 99.48 0.71 -7.86 15 19 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 20 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 21 N -0.51 -20.89 10.57 -187.14 -1.98 -22.87 15 22 H 0.11 1.08 8.14 -2.38 -0.02 1.06 15 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.20 5.91 8.02 -2.91 -0.02 5.89 15 28 H 0.42 16.04 8.78 -92.71 -0.81 15.23 15 29 H 0.29 13.66 8.29 -92.70 -0.77 12.90 15 Total: -1.00 -64.17 283.77 3.09 -61.07 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.40 Total: 20.29 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.56 Total: 28.09 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.43 Total: -93.72 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -0.31 Total: -63.59 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 16 Polarization: 11.42 SS G_CDS: -1.14 Total: 10.28 kcal Total: -64.17 3.09 -61.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083366817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.835 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds