Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97139 * 179.97438 * 7 6 5 9 9 O 1.42099 * 104.27758 * 26.09344 * 8 7 6 10 10 O 1.42098 * 104.27524 * 153.94858 * 8 7 6 11 11 C 1.81399 * 104.44937 * 270.02178 * 8 7 6 12 12 C 1.53002 * 109.46973 * 179.97438 * 11 8 7 13 13 C 1.50706 * 109.46827 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47460 * 59.99647 * 17 15 13 19 19 H 1.48498 * 109.47418 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47042 * 299.99447 * 17 15 13 21 21 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 26 26 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 27 27 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 28 28 H 1.08998 * 109.47506 * 300.00062 * 11 8 7 29 29 H 1.09005 * 109.47248 * 60.00280 * 11 8 7 30 30 H 1.08993 * 109.47362 * 299.99965 * 12 11 8 31 31 H 1.09001 * 109.46854 * 60.00659 * 12 11 8 32 32 H 0.97005 * 120.00253 * 179.97438 * 16 15 13 33 33 H 1.08006 * 120.02917 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 -0.0012 9 8 6.0992 3.8660 0.6038 10 8 6.2322 1.3957 0.6038 11 6 6.2661 2.6363 -1.7581 12 6 7.7879 2.7190 -1.8931 13 6 8.1623 2.7398 -3.3528 14 1 7.3918 2.6978 -4.1085 15 6 9.4884 2.8114 -3.7233 16 7 10.4265 2.8620 -2.8031 17 14 9.9524 2.8380 -5.5326 18 1 9.3333 4.0195 -6.1852 19 1 11.4295 2.9168 -5.6637 20 1 9.4635 1.5979 -6.1872 21 6 3.4311 1.2849 -0.0001 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2128 2.3203 -0.0106 26 1 1.3339 4.5114 0.0011 27 1 3.7922 4.6381 0.0002 28 1 5.9073 1.7258 -2.2380 29 1 5.8115 3.5032 -2.2379 30 1 8.1463 3.6297 -1.4135 31 1 8.2428 1.8523 -1.4133 32 1 11.3595 2.9120 -3.0637 33 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -88.164895 kcal Electronic energy + Delta-G solvation = -18065.904762 eV Core-core repulsion = 14991.434507 eV Total energy + Delta-G solvation = -3074.470255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28517 -37.59276 -36.57383 -35.41526 -33.89769 -31.49754 -31.16408 -30.41658 -27.57738 -25.61417 -23.27595 -22.62201 -21.45907 -19.12615 -18.06119 -16.75811 -16.55689 -16.26238 -16.01172 -15.82301 -15.25943 -15.20585 -14.53206 -14.05996 -13.82343 -13.37905 -13.05539 -12.73698 -12.49763 -12.11749 -11.76358 -11.55880 -11.53355 -11.46422 -11.32889 -11.05943 -10.96720 -10.60236 -10.38130 -10.37390 -9.74464 -9.49657 -9.12380 -8.49293 -8.46358 -6.11645 -4.17449 0.48592 0.80297 1.21780 2.98940 3.28579 3.30124 3.33464 3.35112 3.44948 4.31750 4.41366 4.48180 4.61412 4.68068 4.80710 4.83003 5.04034 5.15739 5.21782 5.23712 5.29469 5.62339 5.71040 5.75857 5.95932 6.09305 6.10202 6.39744 6.45984 7.13001 7.30524 7.36243 7.81068 8.17002 8.85644 9.47230 10.99291 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.004417 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.169521 B = 6337.340638 C = 6683.299887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.103 3.897 4 C -0.164 4.164 5 C -0.103 4.103 6 C -0.063 4.063 7 C -0.615 4.615 8 S 2.474 3.526 9 O -0.944 6.944 10 O -0.943 6.943 11 C -0.563 4.563 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.055 4.055 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.276 -1.510 4.246 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.122 4.122 6 C -0.082 4.082 7 C -0.699 4.699 8 S 2.656 3.344 9 O -0.941 6.941 10 O -0.941 6.941 11 C -0.696 4.696 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.551 -1.673 5.063 20.265 hybrid contribution -0.789 0.122 -1.534 1.729 sum -20.339 -1.550 3.528 20.701 Atomic orbital electron populations 1.23076 0.78416 1.04141 1.01256 1.86113 1.21323 1.26461 1.88891 1.19052 0.92398 0.84428 0.98342 1.21483 1.00165 0.92576 1.04070 1.21078 0.94642 0.97254 0.99180 1.20945 0.94048 0.97608 0.95556 1.31000 1.27686 0.98092 1.13096 1.06393 0.73184 0.74719 0.80088 1.93523 1.82489 1.43115 1.74955 1.93528 1.79698 1.45899 1.74934 1.30193 1.10938 1.10676 1.17839 1.19041 0.83007 0.99191 1.00069 1.20958 0.92229 1.52252 0.90667 0.91980 1.25054 0.96448 0.94866 0.98019 1.69942 1.00566 1.49237 1.33030 0.86521 0.77420 0.78710 0.84563 1.20073 1.21078 1.20071 1.20229 0.91885 0.97562 0.97756 0.92677 0.92615 0.88046 0.84992 0.84885 0.83758 0.85687 0.85706 0.94529 0.94520 0.92439 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.70 10.50 -19.44 -0.20 -3.90 16 3 C 0.10 1.34 6.69 -39.22 -0.26 1.07 16 4 C -0.16 -1.76 9.04 -39.43 -0.36 -2.11 16 5 C -0.10 -1.12 10.04 -39.60 -0.40 -1.52 16 6 C -0.06 -0.84 9.47 -39.56 -0.37 -1.21 16 7 C -0.62 -9.35 5.65 -39.61 -0.22 -9.58 16 8 S 2.47 44.81 5.16 -107.50 -0.55 44.26 16 9 O -0.94 -19.21 17.12 -57.54 -0.99 -20.20 16 10 O -0.94 -19.55 17.12 -57.54 -0.99 -20.54 16 11 C -0.56 -10.59 5.92 37.16 0.22 -10.37 16 12 C 0.03 0.64 4.98 -27.88 -0.14 0.51 16 13 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.06 -0.81 9.41 -39.44 -0.37 -1.18 16 22 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 23 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 26 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.14 1.76 7.57 -52.49 -0.40 1.36 16 28 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 29 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.15 2.15 7.57 -52.48 -0.40 1.75 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -34.79 301.20 -7.80 -42.59 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.00 Total: -1.06 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: -1.32 Total: -36.21 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.17 Total: -44.63 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.55 Total: 44.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.79 -7.80 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.573 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds