Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97139 * 179.97438 * 7 6 5 9 9 O 1.42099 * 104.27758 * 26.09344 * 8 7 6 10 10 O 1.42098 * 104.27524 * 153.94858 * 8 7 6 11 11 C 1.81399 * 104.44937 * 270.02178 * 8 7 6 12 12 C 1.53002 * 109.46973 * 179.97438 * 11 8 7 13 13 C 1.50706 * 109.46827 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47460 * 59.99647 * 17 15 13 19 19 H 1.48498 * 109.47418 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47042 * 299.99447 * 17 15 13 21 21 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 26 26 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 27 27 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 28 28 H 1.08998 * 109.47506 * 300.00062 * 11 8 7 29 29 H 1.09005 * 109.47248 * 60.00280 * 11 8 7 30 30 H 1.08993 * 109.47362 * 299.99965 * 12 11 8 31 31 H 1.09001 * 109.46854 * 60.00659 * 12 11 8 32 32 H 0.97005 * 120.00253 * 179.97438 * 16 15 13 33 33 H 1.08006 * 120.02917 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 -0.0012 9 8 6.0992 3.8660 0.6038 10 8 6.2322 1.3957 0.6038 11 6 6.2661 2.6363 -1.7581 12 6 7.7879 2.7190 -1.8931 13 6 8.1623 2.7398 -3.3528 14 1 7.3918 2.6978 -4.1085 15 6 9.4884 2.8114 -3.7233 16 7 10.4265 2.8620 -2.8031 17 14 9.9524 2.8380 -5.5326 18 1 9.3333 4.0195 -6.1852 19 1 11.4295 2.9168 -5.6637 20 1 9.4635 1.5979 -6.1872 21 6 3.4311 1.2849 -0.0001 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2128 2.3203 -0.0106 26 1 1.3339 4.5114 0.0011 27 1 3.7922 4.6381 0.0002 28 1 5.9073 1.7258 -2.2380 29 1 5.8115 3.5032 -2.2379 30 1 8.1463 3.6297 -1.4135 31 1 8.2428 1.8523 -1.4133 32 1 11.3595 2.9120 -3.0637 33 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084241495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -113.371641 kcal Electronic energy + Delta-G solvation = -18066.997809 eV Core-core repulsion = 14991.434507 eV Total energy + Delta-G solvation = -3075.563302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16099 -38.48866 -38.13419 -36.98438 -35.88505 -33.13054 -32.44414 -31.33714 -28.20520 -27.58474 -24.39868 -23.66090 -23.16372 -20.24177 -19.46823 -18.61020 -17.53901 -17.27129 -17.10107 -16.91836 -16.67571 -16.56484 -16.44234 -15.19643 -14.89779 -14.63205 -14.46910 -13.91088 -13.71693 -13.58370 -13.17359 -13.14746 -12.88886 -12.85170 -12.79254 -12.32778 -12.21918 -12.18910 -12.13385 -11.82946 -11.60747 -11.06275 -10.61588 -10.41075 -9.39335 -8.23789 -6.37884 -0.91704 -0.27666 0.26654 1.43081 1.46574 1.54681 1.96554 2.28280 2.36753 2.41723 2.92526 3.09775 3.21873 3.68671 3.90271 4.03051 4.06933 4.10467 4.17540 4.39954 4.40316 4.43134 4.71113 4.75836 4.78215 4.99077 5.13048 5.19957 5.28789 5.30213 5.52644 5.70195 6.07329 6.32303 6.75356 7.32099 8.88351 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.004417 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.169521 B = 6337.340638 C = 6683.299887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.099 3.901 4 C -0.150 4.150 5 C -0.093 4.093 6 C -0.077 4.077 7 C -0.617 4.617 8 S 2.491 3.509 9 O -0.972 6.972 10 O -0.979 6.979 11 C -0.561 4.561 12 C 0.017 3.983 13 C -0.541 4.541 14 H 0.077 0.923 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.264 1.264 21 C -0.083 4.083 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.173 0.827 26 H 0.174 0.826 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.268 0.732 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.782 -1.001 2.939 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.053 3.947 4 C -0.168 4.168 5 C -0.111 4.111 6 C -0.096 4.096 7 C -0.706 4.706 8 S 2.678 3.322 9 O -0.970 6.970 10 O -0.977 6.977 11 C -0.693 4.693 12 C -0.021 4.021 13 C -0.579 4.579 14 H 0.095 0.905 15 C -0.201 4.201 16 N -0.573 5.573 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.189 1.189 21 C -0.103 4.103 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.190 0.810 26 H 0.192 0.808 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.019 -1.166 3.747 23.351 hybrid contribution 0.095 -0.074 -1.060 1.066 sum -22.924 -1.241 2.688 23.115 Atomic orbital electron populations 1.23455 0.75823 1.05984 1.02771 1.86098 1.24021 1.26155 1.88675 1.19134 0.91841 0.85816 0.97918 1.21961 1.02103 0.91415 1.01369 1.21538 0.93590 0.99034 0.96941 1.21234 0.95545 0.97051 0.95804 1.30187 1.24539 0.99487 1.16391 1.05328 0.74519 0.73331 0.79031 1.93475 1.84091 1.44090 1.75310 1.93473 1.81615 1.47125 1.75465 1.30059 1.06665 1.12947 1.19631 1.18903 0.87342 0.96812 0.99084 1.21486 0.92941 1.51577 0.91944 0.90469 1.26102 0.96507 0.94345 1.03150 1.70094 1.00988 1.50607 1.35630 0.85361 0.77020 0.79440 0.78408 1.18675 1.20994 1.18880 1.20251 0.93414 0.96970 0.99663 0.91097 0.90954 0.86346 0.80972 0.80834 0.83055 0.83695 0.83148 0.96932 0.97240 0.92370 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -7.17 10.50 -92.48 -0.97 -8.14 16 3 C 0.10 2.34 6.69 22.50 0.15 2.49 16 4 C -0.15 -2.56 9.04 22.37 0.20 -2.36 16 5 C -0.09 -1.63 10.04 22.26 0.22 -1.41 16 6 C -0.08 -1.90 9.47 22.28 0.21 -1.69 16 7 C -0.62 -18.54 5.65 22.25 0.13 -18.42 16 8 S 2.49 93.76 5.16 -56.49 -0.29 93.47 16 9 O -0.97 -41.05 17.12 -127.65 -2.19 -43.24 16 10 O -0.98 -42.98 17.12 -127.65 -2.19 -45.16 16 11 C -0.56 -21.50 5.92 71.98 0.43 -21.08 16 12 C 0.02 0.90 4.98 29.85 0.15 1.05 16 13 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 14 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 17 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 C -0.08 -2.43 9.41 22.36 0.21 -2.22 16 22 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 23 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 24 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.17 1.51 6.30 -2.91 -0.02 1.50 16 26 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 27 H 0.15 3.43 7.57 -2.91 -0.02 3.41 16 28 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 29 H 0.15 4.91 8.14 -2.39 -0.02 4.89 16 30 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 33 H 0.14 4.19 7.57 -2.91 -0.02 4.17 16 Total: -1.00 -78.14 301.20 1.29 -76.85 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.11 Total: 9.34 kcal Atomic # 6 Polarization: -75.26 SS G_CDS: 3.51 Total: -71.76 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -91.20 SS G_CDS: -5.34 Total: -96.54 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 93.76 SS G_CDS: -0.29 Total: 93.47 kcal Total: -78.14 1.29 -76.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.523 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds