Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99813 * 2 1 4 4 H 1.48503 * 109.47313 * 239.99962 * 3 2 1 5 5 H 1.48507 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47242 * 119.99997 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46491 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00226 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00136 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99996 * 180.02562 * 11 10 9 14 14 O 1.42899 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.35930 * 117.00270 * 179.97438 * 14 13 11 16 16 C 1.39155 * 120.45930 * 179.97438 * 15 14 13 17 17 C 1.38495 * 118.39045 * 180.02562 * 16 15 14 18 18 C 1.38411 * 119.20748 * 359.97438 * 17 16 15 19 19 Cl 1.73597 * 119.57288 * 179.97438 * 18 17 16 20 20 N 1.31928 * 120.85231 * 359.97438 * 18 17 16 21 21 C 1.31878 * 121.76150 * 0.02562 * 20 18 17 22 22 H 0.96996 * 120.00527 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46884 * 59.99749 * 9 7 2 24 24 H 1.08994 * 109.47274 * 299.99995 * 9 7 2 25 25 H 0.97003 * 120.00348 * 0.02562 * 10 9 7 26 26 H 1.08991 * 109.47072 * 60.00162 * 13 11 10 27 27 H 1.09002 * 109.47078 * 300.00142 * 13 11 10 28 28 H 1.07997 * 120.80764 * 0.02562 * 16 15 14 29 29 H 1.08001 * 120.39425 * 179.72922 * 17 16 15 30 30 H 1.07994 * 119.64507 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0188 -7.2663 0.0015 15 6 2.7591 -8.4063 0.0015 16 6 2.1373 -9.6512 0.0019 17 6 2.9330 -10.7848 0.0024 18 6 4.3099 -10.6434 0.0018 19 17 5.3163 -12.0579 0.0031 20 7 4.8673 -9.4477 0.0004 21 6 4.1442 -8.3448 -0.0001 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 3.1567 -3.4354 0.0009 26 1 3.3597 -5.9706 0.8916 27 1 3.3600 -5.9714 -0.8883 28 1 1.0603 -9.7316 0.0019 29 1 2.4845 -11.7672 0.0071 30 1 4.6363 -7.3835 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087543308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = -47.321851 kcal Electronic energy + Delta-G solvation = -17022.668867 eV Core-core repulsion = 13844.385649 eV Total energy + Delta-G solvation = -3178.283218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02524 -39.26634 -37.94821 -36.74144 -34.34453 -32.93814 -32.46689 -30.61567 -29.03583 -26.77855 -24.21712 -23.42023 -22.47969 -20.05415 -18.66219 -17.86884 -17.36865 -16.71932 -16.51593 -15.63842 -15.25858 -14.90350 -14.79817 -14.44030 -13.92609 -13.74302 -13.35314 -12.94495 -12.61715 -12.33842 -12.04788 -11.79326 -11.57178 -11.29618 -11.07819 -10.92658 -10.39664 -10.16468 -9.96409 -9.51231 -9.27532 -8.83485 -8.68158 -8.06874 -6.24124 -4.32161 0.59870 0.79592 1.55107 2.57231 3.05728 3.20821 3.26189 3.26642 3.27351 3.93008 4.14401 4.19886 4.29821 4.51448 4.77690 4.81780 4.99225 5.05425 5.12279 5.23387 5.35722 5.56849 5.92051 6.83145 7.16362 7.23353 7.32608 7.39391 7.54481 7.86607 8.41279 8.64230 8.87984 9.34413 10.85923 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.055256 B = 0.002771 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.606529 B =10101.024119 C =10587.184715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.501 3.499 12 O -0.532 6.532 13 C 0.033 3.967 14 O -0.274 6.274 15 C 0.092 3.908 16 C -0.095 4.095 17 C -0.111 4.111 18 C 0.130 3.870 19 Cl -0.036 7.036 20 N -0.441 5.441 21 C 0.032 3.968 22 H 0.268 0.732 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.393 0.607 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -19.739 0.007 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.409 6.409 13 C -0.046 4.046 14 O -0.184 6.184 15 C 0.043 3.957 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.035 4.035 19 Cl -0.007 7.007 20 N -0.153 5.153 21 C -0.126 4.126 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.226 0.774 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.817 -19.753 0.007 21.631 hybrid contribution 0.392 0.941 0.001 1.019 sum 9.209 -18.812 0.008 20.945 Atomic orbital electron populations 1.69955 1.06138 1.27611 1.48430 1.24953 0.94937 0.99516 0.94547 0.86445 0.79403 0.82155 0.78738 1.20008 1.21019 1.20012 1.21153 0.93276 0.90272 1.53842 0.91800 1.19183 0.88145 0.81486 0.98074 1.46362 1.11530 1.05309 1.72340 1.19770 0.89036 0.83898 0.78968 1.90727 1.16307 1.84451 1.49397 1.22796 0.95421 0.82555 1.03787 1.86250 1.33541 1.11396 1.87254 1.20213 0.91484 0.88033 0.95940 1.20975 1.01907 0.88570 1.00720 1.21692 0.91612 1.00226 0.99651 1.21473 0.88764 0.88697 1.04595 1.98396 1.70475 1.35076 1.96799 1.66834 1.40795 0.97320 1.10304 1.22874 0.89484 0.97188 1.03076 0.92253 0.95228 0.95220 0.77427 0.88829 0.88836 0.82576 0.82978 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -14.23 9.28 -34.44 -0.32 -14.55 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.35 5.43 -5.20 -0.03 6.33 16 10 N -0.71 -13.63 5.55 -61.48 -0.34 -13.98 16 11 C 0.50 9.31 7.91 -10.98 -0.09 9.22 16 12 O -0.53 -12.53 16.50 -14.35 -0.24 -12.77 16 13 C 0.03 0.42 5.23 36.01 0.19 0.60 16 14 O -0.27 -3.86 9.68 -39.43 -0.38 -4.24 16 15 C 0.09 1.07 6.71 -39.09 -0.26 0.81 16 16 C -0.10 -0.94 10.13 -39.15 -0.40 -1.33 16 17 C -0.11 -0.97 9.87 -39.42 -0.39 -1.36 16 18 C 0.13 1.38 7.27 -17.45 -0.13 1.25 16 19 Cl -0.04 -0.34 29.10 -51.86 -1.51 -1.85 16 20 N -0.44 -5.24 10.33 -10.24 -0.11 -5.35 16 21 C 0.03 0.35 10.22 -17.38 -0.18 0.17 16 22 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.39 6.17 8.32 -40.82 -0.34 5.83 16 26 H 0.09 0.90 7.68 -51.93 -0.40 0.50 16 27 H 0.09 0.90 7.67 -51.93 -0.40 0.50 16 28 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.17 1.40 6.32 -52.49 -0.33 1.07 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -32.70 291.10 -6.86 -39.56 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.69 Total: 0.91 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.70 Total: 2.77 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.29 Total: -43.99 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.62 Total: -17.01 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.70 -6.86 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087543308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.759 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds