Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99813 * 2 1 4 4 H 1.48503 * 109.47313 * 239.99962 * 3 2 1 5 5 H 1.48507 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47242 * 119.99997 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46491 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00226 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00136 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99996 * 180.02562 * 11 10 9 14 14 O 1.42899 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.35930 * 117.00270 * 179.97438 * 14 13 11 16 16 C 1.39155 * 120.45930 * 179.97438 * 15 14 13 17 17 C 1.38495 * 118.39045 * 180.02562 * 16 15 14 18 18 C 1.38411 * 119.20748 * 359.97438 * 17 16 15 19 19 Cl 1.73597 * 119.57288 * 179.97438 * 18 17 16 20 20 N 1.31928 * 120.85231 * 359.97438 * 18 17 16 21 21 C 1.31878 * 121.76150 * 0.02562 * 20 18 17 22 22 H 0.96996 * 120.00527 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46884 * 59.99749 * 9 7 2 24 24 H 1.08994 * 109.47274 * 299.99995 * 9 7 2 25 25 H 0.97003 * 120.00348 * 0.02562 * 10 9 7 26 26 H 1.08991 * 109.47072 * 60.00162 * 13 11 10 27 27 H 1.09002 * 109.47078 * 300.00142 * 13 11 10 28 28 H 1.07997 * 120.80764 * 0.02562 * 16 15 14 29 29 H 1.08001 * 120.39425 * 179.72922 * 17 16 15 30 30 H 1.07994 * 119.64507 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0188 -7.2663 0.0015 15 6 2.7591 -8.4063 0.0015 16 6 2.1373 -9.6512 0.0019 17 6 2.9330 -10.7848 0.0024 18 6 4.3099 -10.6434 0.0018 19 17 5.3163 -12.0579 0.0031 20 7 4.8673 -9.4477 0.0004 21 6 4.1442 -8.3448 -0.0001 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 3.1567 -3.4354 0.0009 26 1 3.3597 -5.9706 0.8916 27 1 3.3600 -5.9714 -0.8883 28 1 1.0603 -9.7316 0.0019 29 1 2.4845 -11.7672 0.0071 30 1 4.6363 -7.3835 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087543308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = -70.955720 kcal Electronic energy + Delta-G solvation = -17023.693708 eV Core-core repulsion = 13844.385649 eV Total energy + Delta-G solvation = -3179.308059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88703 -40.60653 -39.07487 -37.50649 -36.18826 -34.41395 -33.69477 -31.51306 -30.39874 -28.42168 -25.19789 -24.58714 -23.89925 -21.62975 -19.54215 -19.28634 -18.17545 -18.08883 -17.54037 -17.18608 -16.94946 -16.07722 -15.98173 -15.65756 -15.13117 -14.86113 -14.44294 -14.08422 -13.97849 -13.84303 -13.62534 -12.94920 -12.93433 -12.66974 -12.31072 -12.23726 -12.18218 -11.51910 -10.96899 -10.91004 -10.79912 -10.66622 -9.91780 -9.49939 -8.28974 -6.45643 -0.15816 0.02166 0.79582 1.43993 1.48476 1.52668 1.57891 1.59011 2.37176 2.49379 2.74055 3.06459 3.38352 3.41676 3.71374 3.83662 4.01687 4.05478 4.08989 4.43353 4.60190 4.84812 5.08846 5.19409 5.22515 5.43200 5.63174 5.82950 6.00251 6.55018 6.64111 6.80511 7.22347 7.39441 8.82933 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.055256 B = 0.002771 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.606529 B =10101.024119 C =10587.184715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.497 3.503 12 O -0.590 6.590 13 C 0.046 3.954 14 O -0.304 6.304 15 C 0.077 3.923 16 C -0.099 4.099 17 C -0.101 4.101 18 C 0.118 3.882 19 Cl -0.030 7.030 20 N -0.464 5.464 21 C 0.033 3.967 22 H 0.269 0.731 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.414 0.586 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.168 0.832 29 H 0.182 0.818 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -20.241 0.008 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.283 3.717 12 O -0.471 6.471 13 C -0.032 4.032 14 O -0.215 6.215 15 C 0.029 3.971 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.047 4.047 19 Cl -0.002 7.002 20 N -0.176 5.176 21 C -0.125 4.125 22 H 0.077 0.923 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.251 0.749 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.185 0.815 29 H 0.199 0.801 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.392 -20.292 0.008 23.272 hybrid contribution -0.412 0.957 0.001 1.041 sum 10.981 -19.336 0.008 22.236 Atomic orbital electron populations 1.70125 1.08299 1.28669 1.49897 1.26058 0.95741 1.03918 0.93897 0.85216 0.77887 0.76632 0.79542 1.18597 1.21382 1.18609 1.21591 0.94485 0.90333 1.52959 0.89373 1.18597 0.88650 0.83976 0.94443 1.46006 1.11709 1.04689 1.72511 1.20825 0.89388 0.84856 0.76648 1.90699 1.19387 1.85362 1.51608 1.22725 0.93181 0.79851 1.07415 1.86189 1.34902 1.12257 1.88124 1.20356 0.91897 0.87545 0.97333 1.21259 1.02766 0.88436 1.00019 1.21958 0.90821 1.01220 0.98168 1.21787 0.89640 0.88747 1.04498 1.98397 1.70424 1.34586 1.96746 1.66864 1.41449 0.97975 1.11329 1.23181 0.89141 0.97882 1.02276 0.92252 0.99174 0.99165 0.74904 0.85018 0.85025 0.81460 0.80073 0.79022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.98 40.98 29.54 68.60 2.03 43.00 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.56 -28.87 9.28 25.60 0.24 -28.63 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 13.94 5.43 85.64 0.46 14.41 16 10 N -0.70 -26.77 5.55 -466.81 -2.59 -29.36 16 11 C 0.50 18.37 7.91 87.66 0.69 19.06 16 12 O -0.59 -28.82 16.50 16.01 0.26 -28.55 16 13 C 0.05 1.04 5.23 71.24 0.37 1.41 16 14 O -0.30 -8.10 9.68 -73.73 -0.71 -8.81 16 15 C 0.08 1.63 6.71 22.59 0.15 1.78 16 16 C -0.10 -1.76 10.13 22.55 0.23 -1.53 16 17 C -0.10 -1.54 9.87 22.37 0.22 -1.32 16 18 C 0.12 2.26 7.27 84.72 0.62 2.88 16 19 Cl -0.03 -0.51 29.10 -2.72 -0.08 -0.59 16 20 N -0.46 -10.05 10.33 -186.32 -1.93 -11.97 16 21 C 0.03 0.63 10.22 84.78 0.87 1.50 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.41 12.17 8.32 -92.71 -0.77 11.40 16 26 H 0.13 2.01 7.68 -2.39 -0.02 2.00 16 27 H 0.13 2.01 7.67 -2.39 -0.02 1.99 16 28 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.19 2.48 6.32 -2.91 -0.02 2.46 16 Total: -1.00 -74.46 291.10 2.00 -72.46 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.42 Total: 8.37 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.31 Total: 10.21 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.23 Total: -96.09 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.45 Total: -37.36 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -74.46 2.00 -72.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087543308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.508 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds