Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39829 * 120.07248 * 95.65138 * 3 2 1 5 5 C 1.37625 * 119.91876 * 180.27341 * 4 3 2 6 6 C 1.39200 * 120.07900 * 359.49319 * 5 4 3 7 7 N 1.39183 * 119.92472 * 180.25739 * 6 5 4 8 8 C 1.46501 * 120.00559 * 0.24770 * 7 6 5 9 9 C 1.50694 * 109.47367 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00181 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99874 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00032 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47346 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47090 * 120.00095 * 13 11 9 16 16 H 1.48511 * 109.46954 * 239.99501 * 13 11 9 17 17 C 1.39156 * 120.14655 * 0.50174 * 6 5 4 18 18 C 1.37668 * 120.07727 * 359.75375 * 17 6 5 19 19 C 1.50705 * 120.03857 * 179.97438 * 18 17 6 20 20 F 1.39898 * 109.46904 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.46707 * 120.02155 * 19 18 17 22 22 F 1.39894 * 109.47120 * 240.02352 * 19 18 17 23 23 H 1.08002 * 120.03748 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.95777 * 179.72134 * 5 4 3 25 25 H 0.97003 * 119.99985 * 180.24897 * 7 6 5 26 26 H 1.09005 * 109.46677 * 300.00034 * 8 7 6 27 27 H 1.09001 * 109.46808 * 59.99465 * 8 7 6 28 28 H 0.96994 * 119.99906 * 180.02562 * 12 11 9 29 29 H 1.07998 * 119.96090 * 179.76971 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2687 0.1201 -1.2042 5 6 4.6449 0.1147 -1.2011 6 6 5.3394 0.0011 -0.0001 7 7 6.7313 0.0014 -0.0002 8 6 7.4638 0.1266 -1.2627 9 6 8.9454 0.0991 -0.9887 10 1 9.3054 -0.0012 0.0245 11 6 9.8413 0.2030 -2.0316 12 7 9.4029 0.3256 -3.2655 13 14 11.6778 0.1696 -1.6920 14 1 11.9088 0.0251 -0.2323 15 1 12.2927 -0.9776 -2.4069 16 1 12.2922 1.4355 -2.1670 17 6 4.6453 -0.1179 1.2001 18 6 3.2686 -0.1184 1.2037 19 6 2.5177 -0.2479 2.5040 20 9 3.4290 -0.3522 3.5603 21 9 1.7130 0.8810 2.6920 22 9 1.7141 -1.3924 2.4665 23 1 2.7304 0.2117 -2.1360 24 1 5.1867 0.2024 -2.1313 25 1 7.2164 -0.0814 0.8358 26 1 7.2006 -0.7028 -1.9192 27 1 7.2002 1.0685 -1.7438 28 1 10.0332 0.3983 -3.9991 29 1 5.1871 -0.2096 2.1298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088191490.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = -115.883712 kcal Electronic energy + Delta-G solvation = -19538.356866 eV Core-core repulsion = 15817.676693 eV Total energy + Delta-G solvation = -3720.680174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.26309 -48.75832 -48.73992 -40.78902 -37.95952 -36.63199 -34.67712 -32.95605 -31.44017 -28.57225 -27.31622 -24.79501 -24.13369 -22.55637 -20.38144 -19.58833 -19.57229 -19.16514 -18.50420 -17.13829 -16.83028 -16.29908 -15.75569 -15.71920 -15.34149 -15.26571 -15.14760 -14.95074 -14.87636 -14.84856 -14.76547 -14.51968 -14.16376 -13.73642 -13.60000 -13.41527 -13.20159 -12.77027 -12.70962 -12.28681 -12.00834 -11.39009 -11.27691 -10.58251 -10.30715 -8.39157 -8.28263 -6.39759 -0.31399 0.18371 1.44107 1.46924 1.50105 1.57331 1.58306 1.93271 2.34390 2.52533 2.66915 2.68322 2.88632 3.04850 3.09162 3.33144 3.82965 4.13522 4.31171 4.33649 4.71978 4.84341 5.05585 5.21407 5.24537 5.34363 5.47161 5.64649 5.90817 6.32130 6.41855 6.69377 7.00273 7.32275 8.82746 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.004097 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.204928 B = 6832.322283 C = 7493.732468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.271 3.729 3 C -0.083 4.083 4 C 0.004 3.996 5 C -0.187 4.187 6 C 0.251 3.749 7 N -0.709 5.709 8 C 0.260 3.740 9 C -0.556 4.556 10 H 0.072 0.928 11 C 0.015 3.985 12 N -0.921 5.921 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.156 4.156 18 C -0.086 4.086 19 C 0.506 3.494 20 F -0.168 7.168 21 F -0.179 7.179 22 F -0.179 7.179 23 H 0.165 0.835 24 H 0.137 0.863 25 H 0.406 0.594 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.268 0.732 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -0.792 7.920 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.043 4.043 3 C -0.090 4.090 4 C -0.017 4.017 5 C -0.210 4.210 6 C 0.138 3.862 7 N -0.329 5.329 8 C 0.138 3.862 9 C -0.594 4.594 10 H 0.090 0.910 11 C -0.186 4.186 12 N -0.560 5.560 13 Si 0.793 3.207 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.179 4.179 18 C -0.091 4.091 19 C 0.452 3.548 20 F -0.149 7.149 21 F -0.161 7.161 22 F -0.160 7.160 23 H 0.183 0.817 24 H 0.155 0.845 25 H 0.242 0.758 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.820 -0.758 7.585 12.431 hybrid contribution 1.436 -0.032 0.355 1.479 sum -8.384 -0.790 7.940 11.574 Atomic orbital electron populations 1.81205 1.12739 1.11340 1.07710 1.25704 0.92638 0.92504 0.93412 1.15273 0.83476 1.16159 0.94090 1.21005 0.92703 0.91484 0.96509 1.20939 0.94158 1.08290 0.97630 1.18236 0.84709 0.89542 0.93739 1.45368 1.01989 1.74388 1.11157 1.18852 0.90499 0.95375 0.81521 1.21599 0.91482 1.51886 0.94443 0.90967 1.25746 1.03959 0.94233 0.94658 1.70032 1.36608 1.49631 0.99731 0.85354 0.79033 0.77585 0.78762 1.18579 1.20697 1.20709 1.20335 0.91429 1.07749 0.98409 1.19503 0.94133 1.05235 0.90215 1.18329 0.77481 0.73820 0.85173 1.93184 1.66383 1.95808 1.59550 1.93222 1.74857 1.52089 1.95885 1.93221 1.74916 1.51198 1.96715 0.81746 0.84543 0.75821 0.97210 0.97214 0.92279 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.12 18.54 19.01 0.35 -13.77 15 2 C 0.27 7.50 13.18 88.33 1.16 8.66 15 3 C -0.08 -2.07 5.72 -21.27 -0.12 -2.19 15 4 C 0.00 0.09 9.75 22.51 0.22 0.31 15 5 C -0.19 -5.05 9.28 22.36 0.21 -4.84 15 6 C 0.25 7.14 6.65 38.43 0.26 7.39 15 7 N -0.71 -23.53 5.70 -343.10 -1.96 -25.49 15 8 C 0.26 11.21 4.65 85.63 0.40 11.61 15 9 C -0.56 -26.61 9.28 25.60 0.24 -26.37 15 10 H 0.07 3.27 7.60 -2.91 -0.02 3.24 15 11 C 0.01 0.73 5.46 84.66 0.46 1.19 15 12 N -0.92 -48.97 13.29 21.45 0.28 -48.68 15 13 Si 0.97 39.23 29.54 68.60 2.03 41.26 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.28 -11.33 7.11 99.48 0.71 -10.62 15 16 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 17 C -0.16 -3.80 9.26 22.36 0.21 -3.59 15 18 C -0.09 -2.13 5.40 -19.62 -0.11 -2.24 15 19 C 0.51 12.63 2.89 71.24 0.21 12.84 15 20 F -0.17 -3.89 15.97 44.97 0.72 -3.17 15 21 F -0.18 -4.76 16.52 44.97 0.74 -4.02 15 22 F -0.18 -4.76 16.52 44.97 0.74 -4.02 15 23 H 0.17 2.81 8.06 -2.91 -0.02 2.78 15 24 H 0.14 3.99 6.70 -2.91 -0.02 3.97 15 25 H 0.41 12.16 8.32 -92.71 -0.77 11.39 15 26 H 0.01 0.47 7.93 -2.38 -0.02 0.45 15 27 H 0.01 0.47 7.94 -2.39 -0.02 0.45 15 28 H 0.27 13.49 8.31 -92.71 -0.77 12.72 15 29 H 0.16 3.27 7.14 -2.91 -0.02 3.25 15 Total: -1.00 -54.00 280.90 6.49 -47.51 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.45 Total: 7.61 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 3.13 Total: 2.78 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.32 Total: -87.94 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.20 Total: -11.21 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -54.00 6.49 -47.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088191490.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.374 kcal (2) G-P(sol) polarization free energy of solvation -54.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds