Wall clock time and date at job start Mon Mar 30 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48496 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47498 * 300.00193 * 3 2 1 6 6 H 1.48508 * 109.47017 * 60.00116 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99383 * 185.08366 * 7 2 1 9 9 C 1.50696 * 120.00099 * 5.08017 * 7 2 1 10 10 C 1.53004 * 115.54807 * 279.39827 * 9 7 2 11 11 S 1.81393 * 109.47339 * 320.11151 * 10 9 7 12 12 C 1.76197 * 103.00033 * 180.02562 * 11 10 9 13 13 C 1.38857 * 120.06323 * 359.97438 * 12 11 10 14 14 C 1.38144 * 119.97262 * 179.97438 * 13 12 11 15 15 C 1.38461 * 120.09278 * 359.97438 * 14 13 12 16 16 F 1.35102 * 119.94250 * 179.97438 * 15 14 13 17 17 C 1.38486 * 120.12042 * 0.02562 * 15 14 13 18 18 C 1.38271 * 120.02554 * 359.70022 * 17 15 14 19 19 F 1.35104 * 120.04374 * 180.27630 * 18 17 15 20 20 C 1.52997 * 117.49910 * 65.07105 * 9 7 2 21 21 C 1.53000 * 60.03370 * 107.50168 * 20 9 7 22 22 H 0.97000 * 119.99700 * 354.99862 * 1 2 3 23 23 H 1.08998 * 109.46744 * 80.11299 * 10 9 7 24 24 H 1.09003 * 109.46595 * 200.10692 * 10 9 7 25 25 H 1.08008 * 120.01093 * 0.02562 * 13 12 11 26 26 H 1.08004 * 119.95463 * 180.02562 * 14 13 12 27 27 H 1.07995 * 119.98243 * 179.97438 * 17 15 14 28 28 H 1.09005 * 117.49700 * 214.99785 * 20 9 7 29 29 H 1.08994 * 117.49876 * 359.97438 * 20 9 7 30 30 H 1.08995 * 117.50228 * 107.49610 * 21 20 9 31 31 H 1.08996 * 117.49747 * 252.52797 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1167 10 6 0.6282 -3.0148 1.1791 11 16 1.7675 -2.7252 2.5605 12 6 0.8890 -3.3763 3.9421 13 6 -0.3711 -3.9323 3.7658 14 6 -1.0581 -4.4428 4.8502 15 6 -0.4916 -4.4013 6.1130 16 9 -1.1663 -4.9009 7.1715 17 6 0.7649 -3.8476 6.2932 18 6 1.4592 -3.3404 5.2103 19 9 2.6874 -2.8052 5.3848 20 6 0.5043 -2.7655 -1.4221 21 6 1.7897 -3.5335 -1.1079 22 1 -0.4850 0.8369 0.0732 23 1 -0.3087 -2.4895 1.3645 24 1 0.4336 -4.0833 1.0864 25 1 -0.8136 -3.9665 2.7811 26 1 -2.0380 -4.8756 4.7127 27 1 1.2044 -3.8160 7.2791 28 1 -0.4368 -3.3117 -1.3579 29 1 0.5516 -2.0002 -2.1968 30 1 1.6942 -4.5849 -0.8368 31 1 2.6830 -3.2734 -1.6756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259710.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:30 Heat of formation + Delta-G solvation = -56.123071 kcal Electronic energy + Delta-G solvation = -17688.105119 eV Core-core repulsion = 14503.936787 eV Total energy + Delta-G solvation = -3184.168333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.00895 -49.96592 -39.61987 -38.44552 -34.01580 -32.25498 -31.36502 -29.46370 -27.40234 -24.24423 -23.95587 -22.92461 -21.21297 -19.35181 -18.64139 -18.13406 -17.80725 -17.02400 -16.73788 -16.60028 -16.31697 -15.89688 -15.67330 -15.26818 -15.11529 -14.73233 -14.28364 -13.95543 -13.58868 -13.25026 -13.06139 -12.91250 -12.85176 -12.42733 -12.38298 -12.00683 -11.55212 -11.13573 -10.76946 -10.61514 -10.45368 -10.07775 -9.90018 -8.23275 -8.11639 -6.20565 -0.17045 -0.04746 0.63965 1.38478 1.43444 1.51826 1.74265 2.26073 2.43012 2.83754 3.18565 3.37269 3.45785 3.55859 3.85862 4.10602 4.16781 4.35575 4.52061 4.61577 4.64354 4.72573 4.84130 4.92903 4.93961 5.00305 5.01276 5.22905 5.50859 5.63008 5.68833 5.77682 6.35174 6.81483 7.46978 8.95536 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.005636 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.137107 B = 4967.054108 C = 5432.960033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.041 3.959 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.048 0.952 9 C 0.021 3.979 10 C -0.040 4.040 11 S -0.083 6.083 12 C -0.151 4.151 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.106 3.894 16 F -0.132 7.132 17 C -0.163 4.163 18 C 0.114 3.886 19 F -0.135 7.135 20 C -0.152 4.152 21 C -0.185 4.185 22 H 0.260 0.740 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -9.351 8.974 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.160 4.160 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.189 4.189 11 S 0.168 5.832 12 C -0.265 4.265 13 C -0.114 4.114 14 C -0.148 4.148 15 C 0.082 3.918 16 F -0.110 7.110 17 C -0.184 4.184 18 C 0.087 3.913 19 F -0.113 7.113 20 C -0.191 4.191 21 C -0.222 4.222 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.166 0.834 26 H 0.189 0.811 27 H 0.188 0.812 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.517 -8.661 8.775 12.422 hybrid contribution -0.704 0.713 0.118 1.009 sum -2.221 -7.947 8.893 12.132 Atomic orbital electron populations 1.70019 1.06665 1.27232 1.49641 1.25432 0.95401 1.01137 0.94065 0.85868 0.79479 0.81094 0.77492 1.19566 1.20601 1.20937 1.20500 0.92395 0.89878 1.50855 0.93374 1.18584 0.99275 0.94149 0.86055 1.23159 0.99041 1.01500 0.95166 1.86360 1.26086 1.72830 0.97956 1.22666 1.00557 1.05282 0.98021 1.21111 0.92100 0.97520 1.00717 1.21348 1.02232 1.01223 0.89956 1.17204 0.90860 0.99450 0.84242 1.91517 1.79321 1.85122 1.55079 1.21036 0.95042 1.02420 0.99871 1.16864 0.81878 1.00198 0.92338 1.91502 1.40085 1.83841 1.95892 1.22545 0.94361 1.01576 1.00661 1.23105 0.97299 0.96467 1.05298 0.93060 0.90977 0.89806 0.83391 0.81071 0.81227 0.89938 0.91965 0.88558 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.59 13.08 21.45 0.28 -48.31 16 2 C 0.04 2.18 5.42 84.65 0.46 2.64 16 3 Si 0.93 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.50 -25.81 7.53 25.60 0.19 -25.62 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.02 0.95 1.58 -52.90 -0.08 0.87 16 10 C -0.04 -1.62 4.44 71.98 0.32 -1.30 16 11 S -0.08 -3.38 20.37 -56.49 -1.15 -4.53 16 12 C -0.15 -5.09 6.11 22.63 0.14 -4.96 16 13 C -0.09 -2.52 9.36 22.40 0.21 -2.31 16 14 C -0.13 -2.89 10.02 22.30 0.22 -2.67 16 15 C 0.11 2.48 7.30 22.38 0.16 2.64 16 16 F -0.13 -2.94 17.26 44.97 0.78 -2.16 16 17 C -0.16 -4.07 10.00 22.34 0.22 -3.85 16 18 C 0.11 3.57 7.28 22.49 0.16 3.74 16 19 F -0.13 -4.59 16.76 44.97 0.75 -3.84 16 20 C -0.15 -6.44 9.68 30.59 0.30 -6.14 16 21 C -0.18 -7.21 9.89 30.62 0.30 -6.90 16 22 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 23 H 0.07 3.13 7.75 -2.39 -0.02 3.11 16 24 H 0.08 2.85 7.55 -2.39 -0.02 2.83 16 25 H 0.15 3.97 5.87 -2.91 -0.02 3.95 16 26 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 29 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.10 3.20 8.09 -2.39 -0.02 3.18 16 31 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -56.45 292.88 6.44 -50.01 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.15 Total: 7.77 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.61 Total: -43.87 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.28 Total: -48.31 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.53 Total: -6.00 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.15 Total: -4.53 kcal Total: -56.45 6.44 -50.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259710.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.113 kcal (2) G-P(sol) polarization free energy of solvation -56.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds