Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48502 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47119 * 299.99706 * 3 2 1 6 6 H 1.48506 * 109.47405 * 59.99914 * 3 2 1 7 7 C 1.37879 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00234 * 185.98883 * 7 2 1 9 9 C 1.50700 * 119.99442 * 5.98844 * 7 2 1 10 10 C 1.53001 * 115.55078 * 279.38583 * 9 7 2 11 11 O 1.42897 * 109.47374 * 294.88504 * 10 9 7 12 12 C 1.35944 * 116.99738 * 179.97438 * 11 10 9 13 13 C 1.38726 * 120.02727 * 359.72165 * 12 11 10 14 14 C 1.38148 * 119.99300 * 179.80975 * 13 12 11 15 15 C 1.38441 * 120.04357 * 0.44576 * 14 13 12 16 16 F 1.35101 * 119.97717 * 179.76497 * 15 14 13 17 17 C 1.38546 * 120.04959 * 359.78860 * 15 14 13 18 18 Cl 1.73602 * 119.99921 * 179.97438 * 17 15 14 19 19 C 1.38276 * 120.00723 * 359.97438 * 17 15 14 20 20 C 1.53000 * 117.49603 * 133.68498 * 9 7 2 21 21 C 1.52997 * 117.49912 * 65.06399 * 9 7 2 22 22 H 0.96999 * 120.00426 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46877 * 54.88719 * 10 9 7 24 24 H 1.08998 * 109.46839 * 174.87914 * 10 9 7 25 25 H 1.07997 * 120.00473 * 0.03125 * 13 12 11 26 26 H 1.08003 * 119.98080 * 180.21150 * 14 13 12 27 27 H 1.07994 * 120.02025 * 179.97438 * 19 17 15 28 28 H 1.08999 * 117.49885 * 0.02562 * 20 9 7 29 29 H 1.09001 * 117.49906 * 145.01770 * 20 9 7 30 30 H 1.09009 * 117.49397 * 214.97393 * 21 9 7 31 31 H 1.09001 * 117.50009 * 359.97243 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0802 -1.1964 0.0981 9 6 1.2573 -2.4956 -0.1351 10 6 0.6126 -3.0232 1.1483 11 8 1.6326 -3.3530 2.0931 12 6 1.2260 -3.8390 3.2958 13 6 -0.1271 -3.9895 3.5622 14 6 -0.5394 -4.4872 4.7831 15 6 0.3966 -4.8274 5.7448 16 9 -0.0083 -5.3095 6.9401 17 6 1.7482 -4.6733 5.4825 18 17 2.9208 -5.0996 6.6896 19 6 2.1634 -4.1799 4.2593 20 6 1.8053 -3.5249 -1.1256 21 6 0.5240 -2.7553 -1.4525 22 1 -0.4851 0.8400 -0.0004 23 1 -0.0386 -2.2570 1.5692 24 1 0.0263 -3.9134 0.9209 25 1 -0.8580 -3.7210 2.8138 26 1 -1.5928 -4.6075 4.9890 27 1 3.2169 -4.0593 4.0547 28 1 2.7065 -3.2608 -1.6789 29 1 1.7066 -4.5782 -0.8631 30 1 -0.4177 -3.3023 -1.4049 31 1 0.5817 -1.9844 -2.2210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = -43.078856 kcal Electronic energy + Delta-G solvation = -17821.701646 eV Core-core repulsion = 14623.682457 eV Total energy + Delta-G solvation = -3198.019189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.77855 -39.80942 -37.55387 -36.52688 -35.71116 -32.05986 -31.05023 -29.32838 -26.74351 -25.39102 -23.08700 -22.06652 -21.23050 -19.34312 -18.11478 -17.21340 -16.82300 -15.99463 -15.69125 -15.07194 -14.99216 -14.54128 -14.28902 -13.82938 -13.56835 -13.18093 -12.97379 -12.67533 -12.20287 -11.69528 -11.52126 -11.25633 -11.06389 -11.00793 -10.77454 -10.54643 -10.40848 -10.23366 -9.70486 -9.00318 -8.90319 -8.57044 -8.32261 -7.87087 -6.16197 -4.20294 1.02819 1.25846 1.94701 3.23394 3.32401 3.36907 3.55432 3.72005 4.21842 4.33771 4.68363 5.03773 5.13165 5.18497 5.28876 5.38207 5.73101 5.78820 5.97747 6.07067 6.11248 6.16393 6.29376 6.43811 6.48674 6.62853 6.70315 6.90880 7.23324 7.30847 7.79356 7.90552 8.29756 8.81794 9.46269 10.93620 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004750 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.815898 B = 5893.092947 C = 6207.731247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.487 4.487 8 H 0.064 0.936 9 C 0.040 3.960 10 C 0.101 3.899 11 O -0.286 6.286 12 C 0.157 3.843 13 C -0.183 4.183 14 C -0.098 4.098 15 C 0.048 3.952 16 F -0.136 7.136 17 C -0.031 4.031 18 Cl -0.054 7.054 19 C -0.131 4.131 20 C -0.204 4.204 21 C -0.150 4.150 22 H 0.261 0.739 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -8.713 7.940 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.039 3.961 10 C 0.027 3.973 11 O -0.197 6.197 12 C 0.108 3.892 13 C -0.202 4.202 14 C -0.117 4.117 15 C 0.028 3.972 16 F -0.115 7.115 17 C -0.059 4.059 18 Cl -0.025 7.025 19 C -0.150 4.150 20 C -0.241 4.241 21 C -0.188 4.188 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.167 0.833 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.324 -8.592 7.992 11.738 hybrid contribution 0.083 0.849 0.290 0.901 sum -0.242 -7.743 8.282 11.340 Atomic orbital electron populations 1.69965 1.05926 1.26716 1.49521 1.24984 0.94863 0.99103 0.94365 0.86532 0.80392 0.83494 0.77650 1.19548 1.20883 1.20956 1.20438 0.93135 0.88268 1.50666 0.91802 1.18721 0.98460 0.94121 0.84773 1.22749 0.88680 0.96870 0.89042 1.86248 1.37276 1.75641 1.20564 1.19036 0.91624 0.91366 0.87126 1.21373 0.95646 1.04635 0.98540 1.20857 0.99474 0.99001 0.92340 1.17148 0.90778 1.05834 0.83442 1.91486 1.90956 1.86092 1.42940 1.20555 0.88527 1.04622 0.92170 1.98368 1.57645 1.91680 1.54843 1.20120 1.00897 1.03654 0.90350 1.22976 0.97933 0.95735 1.07430 1.22588 0.93231 1.01626 1.01310 0.92914 0.90568 0.94825 0.83649 0.83923 0.83277 0.90023 0.91386 0.91613 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 13.11 55.43 0.73 -23.01 16 2 C 0.07 1.83 5.42 -17.82 -0.10 1.74 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -12.79 8.74 -34.44 -0.30 -13.09 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.93 1.53 -155.66 -0.24 0.69 16 10 C 0.10 2.12 4.56 37.16 0.17 2.28 16 11 O -0.29 -5.82 10.07 -19.57 -0.20 -6.02 16 12 C 0.16 2.70 6.68 -39.24 -0.26 2.43 16 13 C -0.18 -2.76 9.04 -39.43 -0.36 -3.12 16 14 C -0.10 -1.31 10.02 -39.54 -0.40 -1.70 16 15 C 0.05 0.69 7.27 -39.39 -0.29 0.40 16 16 F -0.14 -1.94 16.83 2.25 0.04 -1.90 16 17 C -0.03 -0.45 6.32 -39.45 -0.25 -0.70 16 18 Cl -0.05 -0.72 28.61 -51.86 -1.48 -2.20 16 19 C -0.13 -2.03 9.77 -39.40 -0.38 -2.41 16 20 C -0.20 -4.20 9.96 -26.73 -0.27 -4.46 16 21 C -0.15 -3.25 9.68 -26.73 -0.26 -3.50 16 22 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 23 H 0.08 1.72 7.64 -51.93 -0.40 1.32 16 24 H 0.03 0.62 7.62 -51.93 -0.40 0.23 16 25 H 0.15 2.09 6.30 -52.49 -0.33 1.76 16 26 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 27 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -26.65 294.85 -7.63 -34.27 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.21 Total: 0.33 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.93 Total: -21.45 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.73 Total: -23.01 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.20 Total: -6.02 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.65 -7.63 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.807 kcal (2) G-P(sol) polarization free energy of solvation -26.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds