Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48502 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47119 * 299.99706 * 3 2 1 6 6 H 1.48506 * 109.47405 * 59.99914 * 3 2 1 7 7 C 1.37879 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00234 * 185.98883 * 7 2 1 9 9 C 1.50700 * 119.99442 * 5.98844 * 7 2 1 10 10 C 1.53001 * 115.55078 * 279.38583 * 9 7 2 11 11 O 1.42897 * 109.47374 * 294.88504 * 10 9 7 12 12 C 1.35944 * 116.99738 * 179.97438 * 11 10 9 13 13 C 1.38726 * 120.02727 * 359.72165 * 12 11 10 14 14 C 1.38148 * 119.99300 * 179.80975 * 13 12 11 15 15 C 1.38441 * 120.04357 * 0.44576 * 14 13 12 16 16 F 1.35101 * 119.97717 * 179.76497 * 15 14 13 17 17 C 1.38546 * 120.04959 * 359.78860 * 15 14 13 18 18 Cl 1.73602 * 119.99921 * 179.97438 * 17 15 14 19 19 C 1.38276 * 120.00723 * 359.97438 * 17 15 14 20 20 C 1.53000 * 117.49603 * 133.68498 * 9 7 2 21 21 C 1.52997 * 117.49912 * 65.06399 * 9 7 2 22 22 H 0.96999 * 120.00426 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46877 * 54.88719 * 10 9 7 24 24 H 1.08998 * 109.46839 * 174.87914 * 10 9 7 25 25 H 1.07997 * 120.00473 * 0.03125 * 13 12 11 26 26 H 1.08003 * 119.98080 * 180.21150 * 14 13 12 27 27 H 1.07994 * 120.02025 * 179.97438 * 19 17 15 28 28 H 1.08999 * 117.49885 * 0.02562 * 20 9 7 29 29 H 1.09001 * 117.49906 * 145.01770 * 20 9 7 30 30 H 1.09009 * 117.49397 * 214.97393 * 21 9 7 31 31 H 1.09001 * 117.50009 * 359.97243 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0802 -1.1964 0.0981 9 6 1.2573 -2.4956 -0.1351 10 6 0.6126 -3.0232 1.1483 11 8 1.6326 -3.3530 2.0931 12 6 1.2260 -3.8390 3.2958 13 6 -0.1271 -3.9895 3.5622 14 6 -0.5394 -4.4872 4.7831 15 6 0.3966 -4.8274 5.7448 16 9 -0.0083 -5.3095 6.9401 17 6 1.7482 -4.6733 5.4825 18 17 2.9208 -5.0996 6.6896 19 6 2.1634 -4.1799 4.2593 20 6 1.8053 -3.5249 -1.1256 21 6 0.5240 -2.7553 -1.4525 22 1 -0.4851 0.8400 -0.0004 23 1 -0.0386 -2.2570 1.5692 24 1 0.0263 -3.9134 0.9209 25 1 -0.8580 -3.7210 2.8138 26 1 -1.5928 -4.6075 4.9890 27 1 3.2169 -4.0593 4.0547 28 1 2.7065 -3.2608 -1.6789 29 1 1.7066 -4.5782 -0.8631 30 1 -0.4177 -3.3023 -1.4049 31 1 0.5817 -1.9844 -2.2210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = -55.159195 kcal Electronic energy + Delta-G solvation = -17822.225489 eV Core-core repulsion = 14623.682457 eV Total energy + Delta-G solvation = -3198.543032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.92120 -41.12229 -38.95961 -37.84356 -37.12112 -34.02820 -32.21692 -30.57720 -28.34529 -27.27780 -24.27655 -23.34346 -22.88390 -21.10321 -19.36755 -18.60641 -18.19320 -17.55525 -16.97005 -16.69207 -16.26716 -16.17343 -15.81067 -15.05838 -14.92898 -14.57921 -14.34202 -13.93867 -13.66094 -13.36186 -13.03058 -12.91807 -12.70548 -12.39537 -12.31173 -12.06787 -11.99200 -11.68784 -11.44612 -10.77203 -10.48947 -10.10969 -10.05365 -9.14744 -8.14552 -6.22975 -0.13559 0.07377 0.81561 1.39136 1.43427 1.52964 2.30146 2.37446 2.43209 3.06613 3.15705 3.52259 3.58443 3.86408 4.09526 4.12567 4.25089 4.43275 4.50163 4.60071 4.69692 4.79747 4.88145 4.94685 4.99424 5.17839 5.21649 5.46713 5.54509 5.61135 5.76806 6.35617 6.52595 6.80542 7.45159 8.94368 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004750 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.815898 B = 5893.092947 C = 6207.731247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.047 0.953 9 C 0.004 3.996 10 C 0.116 3.884 11 O -0.310 6.310 12 C 0.130 3.870 13 C -0.182 4.182 14 C -0.086 4.086 15 C 0.049 3.951 16 F -0.133 7.133 17 C -0.035 4.035 18 Cl -0.042 7.042 19 C -0.133 4.133 20 C -0.184 4.184 21 C -0.147 4.147 22 H 0.262 0.738 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.151 0.849 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -9.563 8.694 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.004 3.996 10 C 0.041 3.959 11 O -0.223 6.223 12 C 0.083 3.917 13 C -0.201 4.201 14 C -0.105 4.105 15 C 0.029 3.971 16 F -0.112 7.112 17 C -0.063 4.063 18 Cl -0.013 7.013 19 C -0.152 4.152 20 C -0.221 4.221 21 C -0.185 4.185 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.169 0.831 26 H 0.193 0.807 27 H 0.170 0.830 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.789 -9.452 8.755 12.908 hybrid contribution 0.259 1.049 0.154 1.091 sum -0.530 -8.403 8.909 12.258 Atomic orbital electron populations 1.70033 1.06703 1.27200 1.50337 1.25553 0.95593 1.01534 0.94361 0.85734 0.79249 0.80452 0.77630 1.19624 1.20364 1.20859 1.20638 0.92650 0.90200 1.50597 0.93508 1.18879 0.99998 0.94232 0.86508 1.22385 0.88295 0.97069 0.88126 1.86177 1.37468 1.76801 1.21834 1.19267 0.92975 0.92933 0.86539 1.21477 0.94857 1.04375 0.99379 1.21135 1.00950 0.97328 0.91080 1.17304 0.90848 1.05318 0.83633 1.91498 1.90894 1.85994 1.42822 1.20612 0.89132 1.04423 0.92149 1.98373 1.57278 1.91513 1.54152 1.20167 1.00980 1.03637 0.90434 1.22982 0.97220 0.96483 1.05433 1.22525 0.94647 1.01515 0.99803 0.92924 0.92945 0.92344 0.83091 0.80708 0.82972 0.90354 0.88868 0.89615 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.90 13.11 21.45 0.28 -48.62 16 2 C 0.03 1.60 5.42 84.66 0.46 2.06 16 3 Si 0.94 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.50 -26.76 8.74 25.60 0.22 -26.53 16 8 H 0.05 2.57 7.82 -2.91 -0.02 2.54 16 9 C 0.00 0.20 1.53 -52.93 -0.08 0.12 16 10 C 0.12 4.80 4.56 71.98 0.33 5.13 16 11 O -0.31 -12.61 10.07 -92.92 -0.94 -13.54 16 12 C 0.13 4.38 6.68 22.49 0.15 4.53 16 13 C -0.18 -5.21 9.04 22.37 0.20 -5.00 16 14 C -0.09 -2.08 10.02 22.30 0.22 -1.86 16 15 C 0.05 1.30 7.27 22.39 0.16 1.46 16 16 F -0.13 -3.46 16.83 44.97 0.76 -2.71 16 17 C -0.04 -0.98 6.32 22.35 0.14 -0.84 16 18 Cl -0.04 -1.05 28.61 -2.72 -0.08 -1.13 16 19 C -0.13 -4.01 9.77 22.38 0.22 -3.80 16 20 C -0.18 -7.37 9.96 30.59 0.30 -7.06 16 21 C -0.15 -6.27 9.68 30.59 0.30 -5.98 16 22 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 23 H 0.05 2.38 7.64 -2.38 -0.02 2.36 16 24 H 0.06 2.08 7.62 -2.39 -0.02 2.06 16 25 H 0.15 4.12 6.30 -2.91 -0.02 4.10 16 26 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 28 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -56.09 294.85 5.83 -50.26 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.15 Total: 9.00 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 2.63 Total: -37.78 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.28 Total: -48.62 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.94 Total: -13.54 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.76 Total: -2.71 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -56.09 5.83 -50.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.896 kcal (2) G-P(sol) polarization free energy of solvation -56.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds